Array 1 1707403-1707674 **** Predicted by CRISPRDetect 2.4 *** >NC_021149.1 Azotobacter vinelandii CA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1707403 29 100.0 32 ............................. TGAGCCTTTCGTACGAAACTTGGAACACCAAC 1707464 29 100.0 32 ............................. TATGCCGAGGCTCCGCTAAGAATCATCAAGCC 1707525 29 96.6 32 ..........T.................. TCGGTGACGAACCGCCGGGGGATGACGACCAC 1707586 29 96.6 31 ............A................ ATGATCGGGTATCCGGTCGCCGTGCTTGGGA 1707646 29 75.9 0 ..A.......T.A.C..A........G.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GCGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : GCTGCAGGTGGTCGAGGCCGACGCGCTGCGCCGGGCCCTGGCCAGCGGCATCGGACCGGCCAAGGCGTTCGGTTGCGGCCTGCTCAGCGTGGCGCGCTGCTGATGCCGCCGCCGCTCGAGCCGCTGCGGATGAAGGCGCGGATGTCGATGATCCGCTGCCGCGTACCTTGCGGCGACCGTCGGCATCTTGTCGGTCCGGCTGGGAGCGGCGGACGTACGCCTGCATGCCGGCGGCCGGCCGGACGCACCCGCGAAATGATCTGGTAGCACCTGGCCGGAGGCTGCGAGGAGGATGGCAACCTGCTCATGGCCTGGACCAGCCGCCACGAATCCGGCCACGAGTTCCAGACCCAGGGTGCGAACCGGCGCCTGCCGGTCGAATTCGATGGCCTGCACCTGATGGCTTTCCATCCGCCGGAAAAGCCCGATCCTTGGCAGGAAAAACCGGTAGATTTCTGGCATCTGGTTTTTCCCTTTGGGAACAATCGGTTACGCTAAGT # Right flank : AGTAGTGCCTAACTCTTAAGCGTCTTATGGGGGCTTCCCCGCGTCATCCACAGCCTCATGACTGAGGCTTGTACCCGCGGGCTGGTGTTGGAGGCGAAACTGCCGTCGGGCGGGGAGGGTCTGGATCGGTCCGGGAGTGGCATGTGGAAAAGCGCTACGTCGAGTCGGCGAGGGAGCGGGTGGCGGAAAGGGTGAAAGATATGCAGCGTAAAAATAGCATCTTGCGATATTTGAGCGCGGGCAATATTCTCCGTATCGCGAATTGCTATACGGATGTCGCGGTATGCATGTCATCACACAAAAGCGCATCTGGGAAGCCAAGGAAAAGTGGCCTCACTCCGCATCCGCACTGGATGCGTGGTATCGCCTGATGAGCAAGCTGGCACCGAAGGATTTCGCCGAGATGAAACAGGCCTTCCCCAGCGTGGACAAAGTGGCGGACAAGCATGTGTTCGACATCGGCGGCAACAAGCTGCGGCTCATCGCCGTGGTGGACTACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3263067-3261032 **** Predicted by CRISPRDetect 2.4 *** >NC_021149.1 Azotobacter vinelandii CA, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3263066 31 84.4 34 ..TG-A.A........................ ATATATTTGGAGCTGCTGGGCTGGCATTTCTAAT 3263001 32 100.0 33 ................................ TGGCTAAACGTAACCGCCAGCTCGGCCAGTCTG 3262936 32 100.0 34 ................................ GTGTTGTCGCGCAGGGTCAGGAAGGCAATGCCGG 3262870 32 100.0 36 ................................ GCCGGTACGCGCACGCATCACCGCATGTGCACGCGC 3262802 32 100.0 34 ................................ CTCTCGTTTCGTCGGGATCACCGCCCCAGAGCAG 3262736 32 100.0 35 ................................ TCGCTGTAGCAAGGCCGGCCTGGGGATATGAAATC 3262669 32 100.0 34 ................................ GGCATAGCCCGTACTGGTTGCATCCCAGTCGCGA 3262603 32 100.0 36 ................................ GTCGGCGAACTCCTCCAGGTAGGTGGTCATCTGCTG 3262535 32 100.0 34 ................................ TGGAGATGGGCCTCGACTGGAAGCCGATCAGCCT 3262469 32 100.0 36 ................................ GTCCAGGCCTCAAACGCGGAGAAAGCCGCGTCGGTA 3262401 32 100.0 34 ................................ GTCACGGTGAAGAAGGTCGCCGAGCGTCGCTTGC 3262335 32 100.0 34 ................................ ACCTACGCCTCGGCGAGCGAGAAAACCCGCTACA 3262269 32 100.0 35 ................................ GCCCCGAGCGTGGGCAAGTTCATCAAGTGGTGCCA 3262202 32 100.0 35 ................................ ATGCCGACGATGGCCATGGCGATCAGGCCTCGCGG 3262135 32 100.0 34 ................................ AACACATAGTTGCCGGTGATGGCTTCGTTGCCGA 3262069 32 100.0 36 ................................ CATGCGTGGGCGGCCCAAGCCTACGTCGAAATTCGC 3262001 32 100.0 37 ................................ AGCGATGACGAAATCTCGTGCATGGACTCTCACGCTC 3261932 32 100.0 34 ................................ GCAGATCCAGCAAGGGAAGGCTGGCGTCAAGGCC 3261866 32 100.0 35 ................................ AACCAGTTGTGCGGCAACACCGCTGTGGCTGATAC 3261799 32 100.0 36 ................................ AGTTCCAGCATTCGGAGAGTACGCGCAGTTGTGGCT 3261731 32 100.0 34 ................................ TTTGTCGCCGCCGGAGGATTCAGGGCCATCAGCG 3261665 32 100.0 35 ................................ GGCATGACCGAGCACTACGCTCGCGAGGAAGCCAG 3261598 32 100.0 34 ................................ ACGCCTGACGAGCTGGCCCGCACGCTCGCGAGGC 3261532 32 100.0 35 ................................ TCGCCTGGGCGAGGCTCGTCTGCAGCGCCGCGTCC 3261465 32 100.0 34 ................................ ATGAACACGTCGCCGCCGGCGGCGATATACGCCT 3261399 32 100.0 36 ................................ ACCACCTGACCGGCGCCTGATGCCGGCCCTGCCCAT 3261331 32 100.0 34 ................................ TGCTGGAGCAGTGCCTGGCCGATGGCCCGCCAGT 3261265 32 100.0 36 ................................ GGCCTGATGCGCCAAGCCACTCACAGCCATACCGAT 3261197 32 100.0 34 ................................ ATCTTCCCGCCATCAAAGAATGCCGAGCACGTCA 3261131 32 100.0 36 ................................ CCGCGCAGTACGCCGGCAACACCGGAGTCATTCACG 3261063 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.5 35 GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Left flank : GACGCACCTGGCCATCGCCCTCGGCTACCGGGCAGCACAGAGCGGCCTCAAGACCCGCTTCATCACGGCGGCCGACCTGATGCTGCAACTGGGCGCGGCCCAGCGGCAGGGCCGGCTGAAGACCTACCTCAACCGCGCCATCCTGGCCCCCCGACTGCTAGTGATCGATGAGATCGGCTACCTGCCGTTCGGTCGCGAGGAGGCCAACCTGTTCTTCCAGGTCGTCGCCAAACGCTACGAGAAGGGTTCGATGATCCTGACCTCGAACCTGCCGTTCAGCCAGTGGGCCGAGGCCTTCAGCGGCGACGCCACGCTGACGGCGGCCATGCTGGATCGGCTGCTGCACCATGCCCATATCCTCACCCTGACCGGAGAAAGCTACCGACTCAAGGACAAACGCAAGGCGGGCGTCATCCGCCAGAACCGTAACCCCGAGTGATCCAGGTGGGTCATTATTACTTCGGCAAATAAGGGCCAAGGTGGGTCAGTTTTCAGTCGGC # Right flank : AGGTAGTAGCGCCGCCGGAACAGGTCAGACCGTGACGGGGTAAACCTGGTAGGTCCAATGAGTGATGGGCGCAGCCCTCAGCTCGCTCAACAGATGAGGACCTCGTCAGCGGATTCCATCAGGGCCAGCAGGCTCGCCGGCCTGCACAACAGGCCGGATATAAGACTGCTCCTACCTGCACGCCAGCATGATTACCCATTGAGCTCCGGGAGGCGTCCATATAAGGGCCTAGCGCCGGTTCAGGCCCCGTGCCAGGCGGTCGCCGCCGTACTGCAGCAGGCAGACCAGGGCGACCAGCACGACGATCACGGTGATCATGGTCTGGCTGTCGAAGCGCTGGTAGCCGTAGCGGTAGGCCAGGTCGCCCAGGCCACCGGCACCGATGGCGCCGGCCATCGCCGAGGCGTTGATCAGGGTCACCAGGGTGATGGTGAAGCCGCCGACCAGCCCCGGGCGGGCCTCCGCCAGCAGCACGTGCCAGACGATGTGCCGGCGTTGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 3266363-3265060 **** Predicted by CRISPRDetect 2.4 *** >NC_021149.1 Azotobacter vinelandii CA, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3266362 32 100.0 34 ................................ TTGATCGCGGTCAGCGGGATGCGCCCCAGGGACG 3266296 32 100.0 35 ................................ ACGATATTGAGCGTCGAAGTGCTGGTCACGTTCGT 3266229 32 100.0 34 ................................ AACACCATCCCGGGGCCGGGAACGCTGCGTAAGC 3266163 32 100.0 34 ................................ CTCGGCGTACAGAACGCCCTGCCCTCGCCGGACA 3266097 32 100.0 35 ................................ AGCGACTGGGCGATCCCTGCTCGCGACCAGCAGGA 3266030 32 100.0 35 ................................ ATCTCATTTCGTCTCGCAAGCCGAATCACTGGCGG 3265963 32 100.0 36 ................................ AACAAGGGATACGTTTGGATCAACAATTAAAGCAAC 3265895 32 100.0 35 ................................ TTCACGTCTCTGCGCGTTCCGGCATGATGCGAATT 3265828 32 100.0 34 ................................ CCTGTATGCCGCTGTGCACGCTTCGCACCGGCAG 3265762 32 100.0 34 ................................ TTCCCATGGCTTTCAGGGACCCTATGGGTGGAGC 3265696 32 100.0 35 ................................ AACGAAGCCCCGCAAGAGGCGGAAGCGCCCTCCGA 3265629 32 100.0 36 ................................ GCCGCCATCGAGATCAAGCGCTCTGGGTGGGGCTAT 3265561 32 100.0 34 ................................ ACGATCAGCGCACCGTCATCGACGTACGCAGTCA 3265495 32 100.0 35 ................................ GGGCCATCAGCGATCCACTCCGCTTGAGAACTCCG 3265428 32 100.0 36 ................................ TTTGCTCAGGGACTGAGCCGCATCGGCCAAGCGTAG 3265360 32 100.0 35 ................................ AGGAAGGCCAGGCTAGCTCCGGCATAGGTCTGCAC 3265293 32 100.0 35 ................................ GGCAGCGGGTCTATCCCCTCGCTCTGCCCACCCTG 3265226 32 100.0 35 ................................ ACTGCCCTGTCCAACCGCCGGGCGCGCAAATACAA 3265159 32 100.0 36 ................................ CGCCAGGCGCAACTCGGCCATGCGGGCCACGCTCTG 3265091 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 100.0 35 GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Left flank : TACCCACCCTTCATCTGGAAGTGAGCCCCGACCATGATGGTTCTGGTGAGCTATGACGTGAGCACCGAAGGCGACGGTGCCCGCCGCCTGCGTCGCGTCGCCCGCGCTTGCCTCGACTATGGCCAGCGCGTCCAGTATTCGGTGTTCGAGATCGAGGTCGACCCGGCTCAGTGGGTGTTGCTCAAGAGCCGGCTGTGCGAATTGATCGACCCGGAAGTCGACAGCCTGCGCTTCTACTACCTGGGCCGGAACTGGCAGAACCGGGTCGAGCACGTCGGTGCCAAACCTGTACTCGACCTGAATGGCCCGCTGATCCTCTGAACCGCGAACCCCAAGCGACCGGCAAAACTCCGGCAGGTTCGCGCGCTACTTCACAACCCGGATTTCCTGCCTGTCTGCCCTGGCTTCGCCCTCGACTGGACAGAGAAAGGCCGCTGCATCCGCTGGTTCGCATAGAGTCGGCAATTCCACTTTGCAGATCAACAGGTTATACATACGGG # Right flank : ATGCCGCGCACGGACTGGCGGCTGAATTTCGATTGTCACGCCCCTGTTAGCGCCGATGTAAAACTGACCCACCCCAGCGAAGTAAAATTGACCCACCTGGGCTAACGTCGCGGCCTTTTCGAGGCCGCCCATGTTGACCCAGGAGCAAGCAGTGGAGATCAGAGTATTAGCCCGTCAAGGGCACAGCATTCGGCAGATCGCCAAGATGCTGGGCGTGTCCCGCAACACCGTCCGGCGCTACCTCAAGGAGCCCACCGTCCCGCGCTACTCGCCGCGAGACCCCAGGCCCACCAAGCTCGACCCCTTCCATGACTATCTGCGCGAGCGGGTGAAGCAGGCGCATCCGCTCTGGCTGCCGGCCACCGTGCTGCTGCGCGAGATCCGCGAGCAAGGCTACCAGGGCGGCGCTTCCCAGTTGCGCGCCTGGCTGGCCAGACTCAAGCCGAGCAGGCCGGACGATGGCCCGGCGGTGCGCTTCGAGACCGAGCCCGGCCAGCAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //