Array 1 44369-46527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNJD010000006.1 Shewanella sp. 4t3-1-2LB NODE_6_length_101023_cov_42.217620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 44369 37 100.0 33 ..................................... ATGGTTGACGAAACTTATTTAATTCAGACTATG 44439 37 100.0 33 ..................................... CAACAGTATCTATTAAAACTTGTTTGTTATTCA 44509 37 100.0 34 ..................................... CACCCTTCACCTCTTATTGATGCGTCCAATTTTC 44580 37 100.0 34 ..................................... AGAAAATCTTCTTGCGATCCCAACGCTTGGCTGT 44651 37 100.0 34 ..................................... TACAGGTGAAAATGAAGAAGGTTTTTCTACTGAT 44722 37 100.0 34 ..................................... GTTGATTGTCTTTGAAGGTAAAATACAATTCTGG 44793 37 100.0 34 ..................................... GAATGGTTCATCAGCAACAATCCATTCGACTACG 44864 37 100.0 34 ..................................... GGGCCTTACTTGAACCTTATCCCAAGCACTATCC 44935 37 100.0 34 ..................................... ATTCTCAACCGGGTCACAAACTGCATCGGTAACA 45006 37 100.0 34 ..................................... ACCTGCCATTTTTGCTAACCGACTTAGCATTAAA 45077 37 100.0 33 ..................................... CCATCTTTTAAATGGTTTTTGACGACTTGTTCA 45147 37 100.0 34 ..................................... GAAGCTGCCACGAGCGACCTGACGATTGAGCGAA 45218 37 100.0 32 ..................................... TTTTCGCTTAGATTTAAGCGTAATTGCCAAAG 45287 37 100.0 35 ..................................... TGAACTTGACTGAGGTGGTACTAGAGTCGCCCGCT 45359 37 100.0 34 ..................................... TTGTAGAGTGACTCAAGCGCTGCGCCAATTTGCT 45430 37 100.0 34 ..................................... GATACCGCGCTCTGACGTTCTGTTGTACTTTTTG 45501 37 100.0 33 ..................................... CCAAGTAACCTGGGTCGGATCAAAAAGACTTCT 45571 37 100.0 34 ..................................... AATTCTTAGTAAGTATGGATGTAGTTGATGGTAA 45642 37 100.0 33 ..................................... ATAGCTTTCATTTCAAACCTTCGCATCCCTTTA 45712 37 100.0 35 ..................................... CCCGTAGATCGGACCAAGATCACCAGCGGAATGTG 45784 37 100.0 34 ..................................... CTAGCAATGCTGCTGAATGCGGTGTTACTGACGC 45855 37 100.0 33 ..................................... TCTACCAATCGTCTTACCAACGTATGGGTCTAG 45925 37 100.0 34 ..................................... CTCATCATCGTACGAGAGGATATCCAGTACGCTG 45996 37 100.0 34 ..................................... CCCACCCAACAGATGGGGATTGTTCTGACTGAAT 46067 37 100.0 34 ..................................... GAATCGCCTCACCTTCGTCCAAGTGCATTTCACG 46138 37 100.0 35 ..................................... CCATCCCAATAAATCCGCTCGTACTGCTCTGCTGC 46210 37 100.0 33 ..................................... TGATGGTACGCCGCGTATCTCTAAATCATCCAG 46280 37 97.3 33 ..................G.................. AAGAAGATATGAAAGGGTCTGGTACTTGGTTCC 46350 37 100.0 35 ..................................... CCATCCCAATAAATCCGCTCGTACTGCTCTGCTGC 46422 37 100.0 33 ..................................... GCAAACACGATAGTGCGAGTATCACCTTCATCA 46492 36 81.1 0 ............AT.......TC........-G..T. | ========== ====== ====== ====== ===================================== =================================== ================== 31 37 99.3 34 GTCTTCACAGACTCGCCCTGCCAAAAGGGATTAAGAC # Left flank : GCATGGTATAGATGGCAGCGGCATCGCCGAGCACATTTACGGCGTTTAGTTAAGCTATGTCGCCGGATCCTTGAACGGGAAATCAGTCATGGTGAATAAACCCTTGTGGTTATTGAGTTACGATATCAGCAGTCCTAAACGCTGGCGAAAAATACATCGTTGTATCGGCAGTTTTGCATGGCCGCTACAGAAATCTGTATTTGTAGCTGCATTGACGCCGGTTCAACGGCGTGCCCTTTGTGGTGAATTAGCAGAACTATTAGAACCGGCAGAAGATGCCTTACTGTGTCTGCCTTTTGACACACCACCAGGGAGTTTTCACTGGCATCCATCTTCTGACATAATCATTCTGCCAGATGATGAGCGATTACAAGGCTTTATCAATTAAGTTTAAGCCATTGGCACGTTAAATGCTGTTTGTTGAATTTTTTGTAATGTTTGAAACGTACGTTTACCGTTTGTTTTGCTCTTTAAAAATCAGTGTATTAGAATTTGTTCCT # Right flank : CGTTGTCTGCGTTTCGACAAATTTGTTGGAAAAATACGCGGAAGATTGCCCGGTAGACTGGCCTCATGTTAATCAATGAGGTCAGAACATGTTGGAACAGCTTACACCTCAACGTCATGCGCCCGTATCGGTGACGATGCCGCAATCCCAGGTGAACTGGGTGTGGCATCTGACACATAGAGATAATCTGTGCGGTATTATGCAGCGTGGTTTGCTGAGCCATTTGCAGCTGATGCAACTGAAAGTGCAGTATCAGGATATTTCGGATGCTGAGGTTCAAGCCTGTCGCAGCACTAAGCGACTTTGGGGGAATGATCTGCACGGATTTACGCCCACATTTTTTGTTAAGCGCAACCCCATGATGTATCGGTTGGCGCGAAATGATCGCCGCATATCGCAGTTAGTCTGGCTGAAAATTGATGTGCATCAGTTAGACGCCAGCCGTTGCGTCACAGCGGATGGCAACGCCGCGGCCAATCATACTCAGTTCTGGCAAGGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCACAGACTCGCCCTGCCAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 58785-59951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNJD010000006.1 Shewanella sp. 4t3-1-2LB NODE_6_length_101023_cov_42.217620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 58785 37 100.0 33 ..................................... GAGTATATCATAGTGTATTGCGCTTTTAAAAGG 58855 37 100.0 33 ..................................... GAAATCAGTCATACGATTACTCCTTTTTCTGAT 58925 37 100.0 34 ..................................... CTAAGTTAAATCAGACCATCAACGGGGCACTATA 58996 37 100.0 32 ..................................... CTAAACCCGCTGTATCATTCTATGGCAATATG 59065 37 100.0 34 ..................................... TTAGGAATGAGTTGATTACGCAGATAGTGATAAG 59136 37 100.0 33 ..................................... ACGCCCCGGTTGGCACTGCTGCCGACAAGGTGC 59206 37 100.0 34 ..................................... ATGCTCTTCTCTGCACGTACGTTCTCGTTGATTG 59277 37 100.0 34 ..................................... TTTTCCCGGTTATTAACCACCTGATGACGCGTAA 59348 37 100.0 34 ..................................... TCCCCAGCTGAGTTCTTCTTGGCGCTCTGCATAC 59419 37 100.0 34 ..................................... ATCATTCCACACGTACAAATCCCATGCACAATAC 59490 37 100.0 33 ..................................... ACAACAATTACACCAGTCGCCCCGGCGGCAATT 59560 37 100.0 34 ..................................... TATTAGAATTTATCATTCTCCCAGACGTACCCAG 59631 37 100.0 33 ..................................... GCAGTCAAAGGACTGTTGAGTAAACGCACTGAC 59701 37 100.0 33 ..................................... GTCAACTAAAAATAGTGGTTGACAGATTAAAAA 59771 37 100.0 34 ..................................... AATACAAAGAGTACGCTGAAGATGAACTTAGTAA 59842 37 100.0 34 ..................................... TTGTCCAAACCTTCGAATGCTGCGTCCAAGTCGG 59913 37 94.6 0 ................................GC... | G,C [59944,59946] ========== ====== ====== ====== ===================================== ================================== ================== 17 37 99.7 34 GTCTTCACAGACACGCCCTGCCAAAAGGGATTAAGAC # Left flank : CCAGCACAGCGTGCTCAGGCAGGGGATAATGCTGAAAGTGTTATCGAAACGGTGGATGATTATCTCAGCAGAATGCCGGATGTCTCAACCCCTGCCTCCTTACTTAAAAATACCTCGGATAACGGCATTTTAATTGCCGGAGATGCTGATGCCGCCAACTTATGTAAAAAACTGAAACATCTCTGGGATCGGTTATTGCGGGAAACCAATGACCAGTTGAAAGACGCTCTCGGGCAACGTCTGGCGGAGCATTATCAGATAAAAACAGTCAGTAAACTGAGAATTTCAGGCGGCAAACGACCCCTCGAATGTAAAGGTTTAATGTTATTACCGGAACATATTGATCTATAAATAGAATACAGCTTTATCGGGCTGTGCTGGCTCTTTAAAAATTAAGATTGGCATGAATACTGCTGTATTCAGCAAATTGCTCATTGTTTAAAACAACCGTTTTACATAATTTTTGACCCTATGAAATCAAACGGTTAAAATCGTCTCCT # Right flank : CAAATTTGTCGGAACGGCGGTAGTTATCCAGCATGTTACTTTATGGTCATCGGGTCATTGATATTGTCAGTGACAATTTTTCTAGGAGGAATTTCCGGATGAAAGTTGGTGATCATCTTGTGGTAGACCAAGGGGGTTACAAGCATCACGGTATCTACGTTGGTGGTAAAGACGTTATTCATTACACCGGTGTTGGCAGTGAGTTGGGGGGTATGATTGACATAACCACAGTAGAGCAATTCTCTGATGGAAAACTAGTCAAGGTGGTTGAACACTGGCCGCGAGTATATGACGCTGCAGAAAGTGTCTATCGGGCCAGTAGCCGCATTGGGGAAAACCGTTACAACCTCATATGGAATAACTGTGAACATTTTGTTCTCTGGTGTATTCAGGGAGTACCAGTAAGCCACCAGGTAAATAAAGTGGTGGGCGCAGCCGTGGTTGCCGGGCGAATATTGTCTGTGGCAAAGAGCGCGGAAACCGTATCTACAGTAGCATCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCACAGACACGCCCTGCCAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 6845-7532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNJD010000073.1 Shewanella sp. 4t3-1-2LB NODE_73_length_8255_cov_48.964936, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6845 28 100.0 32 ............................ ATCACCTCGAACGGCTCCGACACGTCTGGACG 6905 28 100.0 32 ............................ TTTGCGCTTAAACCACGCGAGCGCTTCTTTAG 6965 28 100.0 32 ............................ TAACCGTGTATTCCAGAGCAATTCCCAGTGAC 7025 28 100.0 32 ............................ AAATAATCCGGCCAACGCAGGTTTAGCAACAT 7085 28 100.0 32 ............................ AATGGCCGGCGGGTGCATTGTGCCAGCTTTAT 7145 28 100.0 32 ............................ GTAAAATTCGGCGCTGCCAGTGCTAGGTACTT 7205 28 100.0 32 ............................ CAGAGCATGAACAAGCTCCGGGATGAATTGCT 7265 28 100.0 32 ............................ TTGGGTTACCAACATCAGATTCTCAATACTGC 7325 28 100.0 32 ............................ GCAAGAATTGATAATCTATTGTCGAAATCAAT 7385 28 100.0 32 ............................ ACTGGGCCGACAGAACTCAATATCCCTGGGTT 7445 28 96.4 32 ....................T....... AATAGACCTTCAGGCTTTTATAAGCGGATGAT 7505 28 82.1 0 ............A.......A.AC.T.. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTTACTGCCGCGTAGGCAGCTGAAGAA # Left flank : GAGTGATTTTGGCTTCTTCTCTGTAAGTGAAATAATAAAAGTGCCTGAAAAATGTATCCAAGTTCGGTTTTTAAGAAATCAACACTACTCAAAGCGGTTTCCAGGTAGCGTGCGAAGGCGAGTTGAACGACTTAAGCGAAGAGCTGCGGCTAGAGGAGAGGAATATGTGCCTAGACCTTATAATCATGAAACGGAATATGCACTGAGCCATAGTGTTCCTGCTAAAAGTATGAGTACTCGACAAGAATTCATACTTCATATCCAAAAGGAAGTGGCTGAAAATGAAGTTATACATCTTTTTAATGGCTATGGACTATCAGATAGAACTTGTGCGATAGGAACAGTGCCAGAACTCAAAGGATTACTTTGACCTTATTCTTTGATTGCGACATTAACATATTGATTCATAGTGTGATTCTTATAAAGCAAGAAGAAAAGGCTAAATGTTCTGATAGAGCTTAACTATCTGTTTTTAAATGAGTAGAGAGTAAATGTTCATT # Right flank : AGCAGTATGGAATTTATTCATTAGATTGCTGTAATTTTTCAATAAATTGCAGCAATTTTTCTTTTTCTGCTTTAGGTAACTTTTCAATTTTTATTGCTAGTTCGGCCGACAGATCATCCTCACAAAAAAAGTAGCTCATAGGCACACCTAGTGCCTTCGCTAGCTTTCGCAGTGTGCTGATATCGGGGACATGCCTCCCTTTTTCATAGTGGTTCATACGGCCGCTAGCAGAACTTTCTTCCATACCAATCATCACCCCCAAGTTCTTTTGAGTGATGCCAGCACGTTTGCGAGCTTGTTTGAGCCTAAGTGGTATCGGGTTATCTTCCACGAAATCATCAATTTTATAGCCTTTAGATAACTTAGATTGTCTAAGTTTTACTTAATTTTGTATACTTAGCAATCCTAAGTTTTCAAAGGCTCTTGATTGAAAAGTGAAACGTTCTAAAAAAATCAATGCAATCATGTACAAACTGTTAATTGAAAAAGAAATGGATGCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCGTAGGCAGCTGAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1592-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNJD010000095.1 Shewanella sp. 4t3-1-2LB NODE_95_length_2444_cov_33.800604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1591 28 100.0 32 ............................ TTATCGCTACCATAAGCCGCATAAAGTTTGCT 1531 28 100.0 32 ............................ AGTGCGAGGATCAACAAAGCGTTTCAGCGTGT 1471 28 100.0 32 ............................ TTTACGTCACTACTGCCAAAAACGTTATGACC 1411 28 100.0 32 ............................ GCAAGCGCGTGATGCTGTTGCATGGGAATCAA 1351 28 100.0 32 ............................ GTGACTTTCTAGTGATACTAAGCGTGTAAGTT 1291 28 100.0 32 ............................ TGGTGCAATGTGGCCGTGTTTAATGAGTTGTC 1231 28 100.0 32 ............................ TGCTAAAACTCAAACGCTTTACTGATGATGAA 1171 28 100.0 32 ............................ GGCACTGCCCGGAACTGCGGCTTGCGCACCCT 1111 28 100.0 32 ............................ AGCGAGTTGACTACACGATTCTTTCAATTAGG 1051 28 100.0 32 ............................ TCGAGCACCATCAATCATATTGCCGATGGTGA 991 28 100.0 32 ............................ ACTGGCTGCAGCCGGATTGGTGTTAAATCAAA 931 28 100.0 32 ............................ AGCAATGCCCGTGAACCCAAACGGCGGCTTGC 871 28 100.0 32 ............................ ACATCGACACCTACAAATCGAAACGTGATACG 811 28 100.0 32 ............................ AATCGACCTTCAGGCTTTTATAAGCGGATGAT 751 28 85.7 0 .....T......A.......A.A..... | CG,T,C [722,726,728] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTTACTGCCGCGTAGGCAGCTGAAGAA # Left flank : GAGTGATTTTGGCTTCTTCTCTGTAAGTGAAATAATAAAAGTGCCTGAAAAATGTATCCAAGTTCGGTTTTTAAGAAATCAGCACTACTCGAAGCGGTTTGCTGGTAGTGTTCGTCGCCGAATTGACAGACTGAAGCGAAGGGCTGCCGAGAGAGGAGAGGAATATGTGCCTAAACCTCATAATCCTGAAACGGAATACGCATTGAGTCACAGTATTCCGGCTAAAAGTCGGAGTACTCGACAAGAGTTCATGCTTCATATCCAAAAGGAAGTGGCTGAAAATGAAATTATACATCTTTTTAATGGCTATGGACTATCAGATAGAACTTGTGCGATAGGAACAGTGCCAGAACTCAAAGGATTACTTTGACCTTATTCTTTGATTGCGATATTAACATATTGATTCATAGTGTGATTCTTATAAAGCAAGAAGAAAAGGCTAAATGTTCTGATAGAGCTTAACTATCTGTTTTTAAATGAGTAGAGAGTAAATGCTCATT # Right flank : TATGGAATTTACTCATTAGATTGCTGCAATTTTTCAATGAATTGCAGCAATTTTTCTTTTTCTGCTTTAGGTAACTTTTCAATTTTTATTGCTAGTTCGGCCGACAGATCATCCTCACAAAAAAAGTAGCTCATAGGTACACCTAGTGCCTTCGCTAGCTTTCGCAGTGTGCTGATATCGGGAACATGCCTCCCTTTTTCATAGTGGTTCATACGGCCGCTAGCAGAACTTTCTTCCATACCAATCATCACCCCCAAGTTCTTTTGAGTGATGCCAGCACGTTTGCGGGCTTGTTTGAGCCTAAGTGGTATCGGGTTATCTTCCACGAAATCATCAATTTTATAGCCTTTAGATAACTTAGATTGTCTAAGTTTTACTTAATTTTGTATACTTAGCAATCCTAAGTTTTTAAAGGCTCTTGATTGAAAAGTGAAACGTTCTAAAAAAATCAATGCAATCATGTACAAACTGTTAATTGAAAAAGAAATGGATGCCTTTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCGTAGGCAGCTGAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //