Array 1 537645-538875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063050.1 Photobacterium damselae subsp. damselae strain KC-Dl-1 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 537645 28 100.0 32 ............................ TTAACCCCCATCTCCTTGGTTACTTTTTTTGC 537705 28 100.0 32 ............................ AAAACGGCACTAGAAATGTCAGAACTTGATGT 537765 28 100.0 32 ............................ AAGTGCCATCGTTAAGCATTGTTCAAAAGTTT 537825 28 100.0 32 ............................ TTTAGTAAACTTCTTGTTATTCATCTACTTAC 537885 28 100.0 32 ............................ AGAACCCATTCGAATGTTCCGGCGTTGAAGCA 537945 28 100.0 32 ............................ ATAAAGAAAAACAAATAATCAGCGATAGCACC 538005 28 100.0 32 ............................ GAGTTAAAAAACTGGTCTGAAGGTGAGAGATT 538065 28 100.0 32 ............................ GTCCGTCATGGGTGGTTACTGGATTAAAACCG 538125 28 100.0 32 ............................ ATCAATTTTATCAACCCTATCAACCACCCCAT 538185 28 100.0 32 ............................ AGCTAAAGCCCAAATGAAAACCATAAAGAAAA 538245 28 100.0 32 ............................ TCGTTTTTACGGGGCTTTTTTACATCTAAAGC 538305 28 100.0 32 ............................ TAGGGCTAAGCGGTTCCGAGAAAGAATTAATG 538365 28 100.0 33 ............................ TTTTATTCAAATTAGAAGAGATCTCTTCATACA 538426 28 100.0 33 ............................ TACAAAGTCAGATCAACCGAACTCAAGATCCAA 538487 28 100.0 32 ............................ ACAGTGAGTGTTATTATTTCCCCAGCCTTCAT 538547 28 100.0 33 ............................ GTCAGATAACTGAATATGACCGACTAATTCAAC 538608 28 100.0 32 ............................ AAACGGTGCAGAGTTTAAACCCGCATCTTCAT 538668 28 100.0 32 ............................ AACCGCAACAGTTGCAATGGCAACTGCAAGCA 538728 28 100.0 32 ............................ TGAAATCCATGCTTTAATATCCTGTTTGATTT 538788 28 100.0 32 ............................ ACCAGAACCACCACCCTCAGAACCACCGCCCT 538848 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGTAGATCTAAAAGTCTCAAAATGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTACTTTAAGCTGGATTCAAAAGGGAACAAAAAGTAGACGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATATACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTGAAATAGGGCGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : ATGCAGGCAGAAATTCGTAATGGTTTGAACCTGCTTCACTACCGAATAGGTAGATAAAACTTAGCAATTTCGCCGTAAACCCTCGCCCCAATCGGGCGGGGATATAAGGCGTAAGACGCGAAGCGGCTTTATCTGGTGTAGCCTGACTTTCTACATAAGACTTCAATGTTTCGATTGTTGCTCCGCCAGCAGTACAAGCAAAGTAGGAACGTGACCACAAAGCAGCGCTTTTACTTTGCCTTGTAAGATGTGTGTTTTGCAATCTCAGCATTCTTGATGATATTGATTTAAGATTATTTACCATCACGCTAATAGCTAGTTTTGGTGGATAGGAAATTAATAGATGCACATGATCTTCTTCACCGTCCATCTCAATTAACTCACACTCCAATTTTACACAAGCTGATTCAAAAGCCTCTCTCAGTTGTTCAATCATGATCCCAGTAAACAACTTGCGCCTGTACTTGGTTGTAAATACCAAATGCACCACCAATTTACTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 549086-550857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063050.1 Photobacterium damselae subsp. damselae strain KC-Dl-1 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 549086 28 100.0 32 ............................ AAATGGGCGCGGGTAATATTGGCGCTTTAAAT 549146 28 100.0 32 ............................ GTACGATGTGAACCGAACCGGCGCGGATTTGG 549206 28 100.0 32 ............................ ATCCCCATGAGCTTGGGCTCCATTGAACTTTC 549266 28 100.0 32 ............................ CAGTTTGTATCACTGCCCGAATAACCCTCTAA 549326 28 100.0 32 ............................ AAGCCAATACCAGATGATATCAGACTCAACGA 549386 28 100.0 32 ............................ TTGCACTCACAACAAGTCAAATACTTACCATC 549446 28 100.0 32 ............................ TTAAAGAGAATGACTTCATCATTAGCGCATTT 549506 28 100.0 32 ............................ AATCTCTTGCGCAGACAGTGCGTTTGCACAAA 549566 28 100.0 33 ............................ CTATTACCACAGAGGGTTATACCATGCAACTAC 549627 28 100.0 32 ............................ TCGTGCCTTTGATAGTAATCTCTCGATAATTT 549687 28 100.0 32 ............................ AAGATGCTATTGACCGCGATGGTTATTACGAG 549747 28 100.0 32 ............................ ATTCATCACTTTTTATTTGAGCTCCGTTTCTT 549807 28 100.0 32 ............................ TCTATACCTGCATAGATAGATTCTTTTAATGA 549867 28 100.0 32 ............................ TTTTCATATTTCCTTTGCTCAGTATTAACAAC 549927 28 100.0 32 ............................ TTACACTATGATTGGTGCAGGTGGAGGATTAA 549987 28 100.0 32 ............................ CAATGATTCATTCCCTCTATGGTCAATAGAGA 550047 28 100.0 32 ............................ TTTGTCATCTGAGAAAGGAATTTTACACCAGC 550107 28 100.0 32 ............................ TGAAAGCTCACAAGACCCAATGAGCAAAGAGT 550167 28 100.0 32 ............................ TCGAAGAGAGTTCAATGATGAAAAATCAGTAA 550227 28 100.0 33 ............................ AGATCGCTCGATCATTTCCCAGCCCGTTTTATC 550288 28 100.0 32 ............................ TTGTGCGTTATAATTTTGAGCGCGAAATGGCC 550348 28 100.0 32 ............................ TTGTCGACGATAAGCTGGTTAAATGCGGTTTA 550408 28 100.0 33 ............................ CTCACCTGATACACATAACCTGCCTCGACAGGA 550469 28 100.0 32 ............................ GTTTAGTTTCTTTAATGAGTTATCAACCGTTA 550529 28 100.0 32 ............................ TCTTGTCCCTTTAAGGTTTTTATGAGCTCAAT 550589 28 100.0 32 ............................ ATACTCCATATATCTTAGGATGGTGTCAGATG 550649 28 100.0 32 ............................ GGACAGCGCAACAGGCTCTTGCTGATATTGAG 550709 28 100.0 32 ............................ TATTATGTTAACTCACTAATTCTACAGTGATT 550769 28 100.0 32 ............................ TTTTAATGTTAGTAATTCAAAAGGTTTAACTT 550829 28 78.6 0 .......A...CA........A..CT.. | C [550849] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.3 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCGTGATATTGCAGGGCATCGCACTGTGCATCGCGTACAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTTGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAAAGATTAGCTTTACCTTTTATCCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTATTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTGGGTGAGTTTTCTAGCTATGGTATGAGCCGCACGTCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATCATATTGTAATAGGTGAGAAAAAAGGGTTTTTTATTGAAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : AGTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATCATTAGCAAAAGTATAAACATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGTCGTCCAACTAAGCCAACTAAAAGCTCCCAACGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGATCGACTAAAACGATGAGAAAGAAGGTTGATTATTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //