Array 1 1040661-1038381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015030.1 Mannheimia granulomatis strain B 234/94 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1040660 32 100.0 34 ................................ GCGAAAAACCAAAGCGAAACAGTGGCAGAAAAGG 1040594 32 96.9 33 A............................... GCTGAACCAAACATCGTCATCTTACGCATGACA 1040529 32 96.9 34 A............................... CAAGAACAGCTTTAAATGCTCAAGTTGCTCAAAG 1040463 32 96.9 34 C............................... ATTTTGGAACAAGAGTGGACTATTAAAGAGAGTC 1040397 32 100.0 33 ................................ CAAACAGGTGGTGTGATTATCGGTAATCGGGTG 1040332 32 100.0 35 ................................ TTGAAAGTCATTTCGGTTTAGATTTAAAAGCAATA 1040265 32 100.0 34 ................................ ATTTTGGAACAAGAGTGGACTATTAAAGAGAGTC 1040199 32 100.0 33 ................................ CAAACAGGTGGTGTGATTATCGGTAATCGGGTG 1040134 32 100.0 36 ................................ GCACTTTATGCTCTAGACATTTGAATGCTTTTGCCC 1040066 32 100.0 34 ................................ TCCACTGTAAGTATTGGCTGATATGCTTTGGCTC 1040000 32 100.0 36 ................................ AACGATAGATTTGGATTTAGGAGAAATTAAGATGAC 1039932 32 100.0 34 ................................ AGGCGAATGCCCGCACGTTTGGCGAGTAATTGCC 1039866 32 100.0 34 ................................ TCGGATCTTCCAACAACTCTTTCACTGTTACTAA 1039800 32 100.0 33 ................................ ACTGTCGTGACCAAGAGGGACGTTATGTTAGCT 1039735 32 100.0 33 ................................ ATCCGCACTAATCCCCAACCAATGACCAATATA 1039670 32 96.9 32 C............................... ATAATTGGTCTCATGGATTGCAAGAAAAATCG 1039606 32 100.0 33 ................................ ATGGATGAGCCGATGGGCTGCTATAATGATATC 1039541 32 100.0 33 ................................ GGTTGCCCCTGCCGTCTGTAACGTTGAGCCAAG 1039476 32 100.0 34 ................................ GCCTAAGTTGATTAATGCTATTGCTAACTTGTTA 1039410 32 96.9 35 A............................... TGCTGATGTAGCTTCTTCCGATTTCCCTATATCAT 1039343 32 100.0 34 ................................ GCAGACCCGAAAAACACAATATAACCGTGAATAT 1039277 32 100.0 36 ................................ ACTGCCATTAAACACTTTCATAGCAAGCGAACCAAA 1039209 32 100.0 35 ................................ CAACGGCGAGCTGTACCAAACGACACACCTGCACG 1039142 32 96.9 34 C............................... GTAATCCCACTCTAAGTCTAAAACGGATAAACCG 1039076 32 100.0 33 ................................ GCAAAGTTCCGACAGCCTTTGAGGTTGTTCACG 1039011 32 100.0 34 ................................ GCAGACCCGAAAAACACAATATAACCGTGAATAT 1038945 32 100.0 36 ................................ ACTGCCATTAAACACTTTCATAGCAAGCGAACCAAA 1038877 32 100.0 35 ................................ CAACGGCGAGCTGTACCAAACGACACACCTGCACG 1038810 32 96.9 34 C............................... GTAATCCCACTCTAAGTCTAAAACGGATAAACCG 1038744 32 100.0 33 ................................ GCAAAGTTCCGACAGCCTTTGAGGTTGTTCACG 1038679 32 100.0 34 ................................ CGATAGCAGCTCAAACACCTACGAATGGATGAGC 1038613 32 100.0 35 ................................ ATCAATACCTTGAATACCCGTTGGAGTACCTGTCA 1038546 32 90.6 35 ......G......T.C................ GCGGGGTAGAGAGAATGAATCTATGGATTGAACGT 1038479 32 90.6 35 ......G......T.C................ TGCACAAAAAGCCGTTGCAGATAGATATATTGCTA 1038412 32 93.8 0 ......G........C................ | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 98.7 34 GCAGCCACCTTCGCGTGGCTGTGAGTTGAAAC # Left flank : GCTTTTCTATGATGATGTTGATTACCTATGATATTTCGTTGGATGACCCAGAGGGGCAAAAACGCTTGCGCCATATTGCGAAACATTGCCTTGATTACGGTGTGCGGGCGCAATATTCGGTGTTTGAATGTGAGGTTACCCCTGATCAATGGGTAAAATTAAAACAAAAATTGCTCGACACTTATAATCCTGACTGCGATAGCCTGCGGTTTTATCATTTGGGCAGCAAATGGCGAAATAAAGTTGAACACCACGGCGCGAAACGGGCGGTGGATGTGTTTAAAGATACCCTGATTTTGTAGTGTTTTTGTGATCGCTAATGGGTGGTTCTCATCAAAATGCCGTGAGGTTAGCGAATATCTAAGTTCTTTAAAAATCAATAGATTATAAATTTTGGTAGCACAATAGATGTTGTGTTACACTTTAAATTACTCCTTATAGAAACAGTTAGCGAATCCGAGGCTGCAAAGCCTTGTGGCGCAATGCTTGCGGATATAGGG # Right flank : TGTTCCTTTCTTTTTATTTATAAAAAAATGGACGAAACTATTTTGCATTATTTTTTGTAGCAGCTTTTAGTATGGATTTCAAGATTCGGCTAGCGGTTAAATTTTTGCAAAAGTTTGCAAATCTGTTATACTTCCCTTGAGTTGGTTAGGCAATCGCTGGTTTATTGAAGCCCTTAGTGCTGTAAAGTAAAAGCCCGAAACGGGTGATAAGTGGGACAAATAAACGAGAGGAAAGTCCGAGCTACATAGGGCAGAGTGCCAGATAACGTCTGGGAGGCGTGAGCCTACGACTAGTGCAACAGAGAGCAAACCGCCGATGTACGTAAGTGCAGGTAAGGGTGAAAGGGTGTGGTAAGAGCACACCGCGTGGGTGGCAACATTCCACGGCACGGTAAACTCCACTCGTAGCAAGACCAAATAGGAACTCAATCGGTGGCCCGCCGAGAGTTCGGGTAGGTTGCTTGAGCGTATGTGTGAATATACGCCTAGAGGAATGATTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //