Array 1 191940-193557 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHT01000001.1 Streptococcus gallolyticus strain AM24-4 AM24-4.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 191940 36 100.0 30 .................................... AAAGAAAAAAGAAAAGGGGCAAAATAACAT 192006 36 100.0 30 .................................... ACTGTCTTACGAAGAATTAGCAAAGGGCAT 192072 36 100.0 30 .................................... AAATCCGAGACGAACTAAAACAACGATATA 192138 36 100.0 30 .................................... TGTGGAATTTCTCATTGTGCTTGTACAGCA 192204 36 100.0 30 .................................... ATCTTGACGGTGATTTTCTAGCCAACTTCT 192270 36 100.0 30 .................................... ACCAAAAAGAAAATAAGGGGTAAAAACCAT 192336 36 100.0 30 .................................... AGGTTCGAATCCTTGCGTGGGTATCACCCA 192402 36 100.0 30 .................................... GACATCGCTTCGCAAGCAAGCTCTAGAACG 192468 36 100.0 30 .................................... ACTGGGCTCTTGATGAATACGAAAAAGAGT 192534 36 100.0 30 .................................... AAATGCTGTTGACAGCGATTGGGTCTACAA 192600 36 100.0 30 .................................... CTTGGTTTACGTTTTGCTCAAAACACCGTC 192666 36 100.0 30 .................................... TAGCAACTTGATAAATTATTCCTTTTTGAG 192732 36 100.0 30 .................................... TAAATGCTAATCATTTTCCTCTTCCTCTCT 192798 36 100.0 30 .................................... AAGAAGGTTAATGCATATTGATGAAGTAAA 192864 36 100.0 30 .................................... CAATCTGAGTGCCACGTGGATTGCGTTTTT 192930 36 100.0 30 .................................... TTATTGAGTTATATAACATACTTCTCCTTT 192996 36 100.0 30 .................................... TAGAGGACTTCCAGTATTCGATGTGTAATC 193062 36 100.0 30 .................................... TCACCTGCCTGCGGTGCGTTTGAGCCATTG 193128 36 100.0 29 .................................... AGAATAGAATCTTTTAGCTGAATATGTTA 193193 36 100.0 30 .................................... TATTGACTTCCAAAACGTTAGGATTCATAG 193259 36 100.0 30 .................................... GAGAATTACTATGACCGTAACGAAGACTAG 193325 36 100.0 29 .................................... ATTGAACGTGATACACTCAAAAAGCACAG 193390 36 100.0 30 .................................... GACGTTTGAAGAATTAAAAGATAATTATCG 193456 36 100.0 30 .................................... GATATTGCTAAAATTGAAACCGTTCAGGCT 193522 36 83.3 0 ............................TT.TGT.T | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGACTATCTTGATTATTCTTCTTTCATAATTATTTGTAAGACTATTACACAAATGACTGAGAAATTTCCTAATTTTTATTGCACAATTTTCCCGTCAAATGAAAGTTATTTATACGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGACTTTATTGAATCATTGTTTGACTTAGATTTCATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATTTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTTCAGATATGGTAGCCATCAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGTCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : TTTATTATTTAAAATCGGTTGAAAGGGATTTTATGACTTCAAAAATTTTCTTTGGTGAGTGGATGAGGATGAAAAAATTGATAGCGCTTTTATCGATTTTACAGGAATCTCTGGTGTTATTGTGAATATGAAAGTACTCCTGATAGCATCAAATTAATTATTTTCACTGTTCAATAAGGTAATGGAGCAGGTTTATACTTATCAATTTCGCCCCATTTTTGAATAGTAAATTTGCTGACAATTATGAGTTAAACGGTTATAACATTAAACAATTGATTCTTGATGCGTATGCCAAAAAAGATATTAAGCACTGAGGGCGCTCAGGATGCTTTTAGACGAAATTATTTTATAATATTTAACCTTTTTACCATCTTATGATGCTTTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTTTAAGATGGATATTCAAGAATTAAAAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //