Array 1 8-7078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGP010000025.1 Rhodobacter sp. SGA-6-6 25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8 32 100.0 34 ................................ TTCTCGCCATCGCTCCATCTGCGCACGCCGACCC 74 32 100.0 35 ................................ ATCGCTCCCCTCGGTGTAGTAATGCAGGCCTTGGA 141 32 100.0 34 ................................ TTGAACGGCTCCCCGAACCACCACGGCTGCACGA 207 32 100.0 34 ................................ CGGCAGGTTGCGCCACGCATCGGTGATCCAGGCA 273 32 100.0 34 ................................ TCCGCGCCGCAATCCGAAGCCCCGGCGGCAGGCG 339 32 100.0 35 ................................ CTTGAAAAGGAACGCAACGACTTGCGCGCCAAACT 406 32 100.0 33 ................................ TGACGCCCGCGGAGATCGACGCCTGCGCCGCGA 471 32 100.0 33 ................................ GCTCCGGTGGCAGTTGCGGGAGAGGCATCGCCC 536 32 96.9 35 T............................... AGGGCCATCACACATACCTCCTGTTGCTGCGGATG 603 32 100.0 34 ................................ CAAACCGCCGCCCCTCCCGGACCCACTCCACCGC 669 32 100.0 35 ................................ TTCAGCCCCGAGGCGCTGACCGCCATCAACCGCGC 736 32 100.0 35 ................................ ATGGGCGAGGGGAGGCTGTGGCGTGGTCAGAAGCC 803 32 100.0 35 ................................ CCAGACTGGACGACCAGATAGACCCATTCGCGGTC 870 32 100.0 36 ................................ CCAAGCAATGACCGCCGCCCTCACCGAGACGAACAA 938 32 100.0 36 ................................ ATTCGCCGCGCAAACCACGCCTCGCGGTCGGCCAGC 1006 32 100.0 35 ................................ GTCGGACGAGGCTCGCGCAGTCGAGGAATACAACG 1073 32 100.0 34 ................................ CCCACGGACCCGAGAACCGGCCTGACCCTGCCCT 1139 32 100.0 34 ................................ TCACCTGTGAGGCGCTGCCGTCCCCGATCACGGG 1205 32 100.0 35 ................................ CCAGGTGAAAGGCTGGGAAATCGTCAGGATCGGCG 1272 32 100.0 34 ................................ AGGGCCATCCTGCGCAATGGGCTGGCGATGAAAG 1338 32 100.0 35 ................................ CGGTCGATCCGATCCCGGATCGCTACCAGTCCAGC 1405 32 100.0 34 ................................ GGGTGAAGCTGGTCCGCAAGACCGGCGGCATCTG 1471 32 100.0 34 ................................ CACCGCCAGTGATGCTCGGCGCATCGAGTTTTCG 1537 32 100.0 34 ................................ AGACATGCCAGCCGATGCCGCCGACTTGATGAAC 1603 32 100.0 37 ................................ GCTGTCAGCACACTTTTTTGCGCGGAGGTCCGCCAGC 1672 32 100.0 34 ................................ CTCGCCGTGAAGGCGATTGCTGATGAGGCGGGGC 1738 32 100.0 36 ................................ CGCGTATTCGACCAGCGGCAGGCCCTGATAGGCCGC 1806 32 100.0 35 ................................ GTCCTTGACGAGTGCCATGGTCCGTTCCTTTCAGC 1873 32 100.0 35 ................................ GAGGTGCTGGAGCAGATCGGCGCCCTCGGCGAGGA 1940 32 100.0 34 ................................ CTTGCGCGCCCGGGACCGGCAGCCCCGACCGGCC 2006 32 100.0 34 ................................ GGCGGCACCTGTGGGGCGACGACAGCGATGCCGC 2072 32 100.0 35 ................................ GGCAAATTCGGCAAGGGCAAAAAGGACCCCTCCAA 2139 32 100.0 34 ................................ GCCAGCTCGGCCGAGATCATGGCGCAGCACGGGG 2205 32 100.0 34 ................................ ATCAGCGGATGCACCGTTTCGGCCATATCGAAGC 2271 32 100.0 36 ................................ TCCTGGCCGGATGACAAGGCGCGAGGGCGGAAGGCC 2339 32 100.0 33 ................................ GGTTTGGAACCACGAGGTTACAAACCAAAACGC 2404 32 100.0 34 ................................ TCGCGTGAAGTGACGGTCGGTCTGATCGGCATCC 2470 32 100.0 35 ................................ AAGGGTCGCAAGGTGACCAAGGCCGAGCTGCGGGC 2537 32 100.0 33 ................................ TCACATGGAGAACCCCATGAAAGGCAACTTCGA 2602 32 100.0 35 ................................ TCCGATCACACGCGGGATCGGTCCGTTCGGCTCCA 2669 32 100.0 34 ................................ GGCGTGACCTATACGGCGACGGTCAAGGTGATCG 2735 32 100.0 34 ................................ ACTATCGCAGATGCATGGTGCGCTGGCCTGCCGA 2801 32 100.0 35 ................................ CCCGGGCAATGGGGTATTGAGGTTGATGGAGACGA 2868 32 100.0 34 ................................ TGGGCCGACCTGGTGGACGGGCTGCCCTACAAGG 2934 32 100.0 37 ................................ AGATGGTTAAGCTGTAAACTAGTCGCCCCCGTGGCTT 3003 32 100.0 34 ................................ GGCGAAATCCGCCACCTTAAGCCACAGGTCGAAC 3069 32 100.0 33 ................................ TCCGGGTTGCGGCGGCTGCGGTCCTCGCCGTAG 3134 32 100.0 36 ................................ ACGGTCATGTCCTGGGCGGGAAACTTCGATCCGGAC 3202 32 100.0 39 ................................ CGCTCCCGCCTGCCCACGGCGATCACGCTGACGACCAGT 3273 32 100.0 33 ................................ CCGATCGCGTTGCACAGGAGGACACCCCCAATG 3338 32 100.0 35 ................................ CATGATGGCTCAGGACCTGCTGCCAAGATGGCGGC 3405 32 100.0 34 ................................ CTCTCGGGCCTTCCGCTCGGCTTCGGCTTTCTCC 3471 32 100.0 34 ................................ TCACCGGATAACGCCCGTCGAACATACCTGCGAT 3537 32 100.0 35 ................................ CTGCATACGGGTTGCGTGTTTGCGTGGGCGTTGCA 3604 32 100.0 35 ................................ TGCGCCCCGCCGATCCGTCCGCCAGAAAAGATCAG 3671 32 100.0 34 ................................ GATCACGCTGACGCCCGAGGATCGCGCGGCGCTT 3737 32 100.0 34 ................................ ACTGGTCGGTTCCAGCGCCGAGAGGCGACGACGG 3803 32 100.0 34 ................................ AATCGAGAGGGTCGGCGCAGGTCACGACGATGGC 3869 32 100.0 35 ................................ TGCCTCCTGAACAAGTTGATGATGGTGGTGATGAG 3936 32 100.0 33 ................................ CGCGACATGTGCAGCTCTATCGCCAAGGACCCC 4001 32 100.0 34 ................................ GGTGTGAAATGCGTTAGCCAGAAGGGATGCGTAG 4067 32 100.0 35 ................................ CGCCCTAGGGCTGACCGAAGACACCCTCGCAGATC 4134 32 100.0 34 ................................ ACGAACGCCTCACCGTGCGACAGCAAATCGCGAT 4200 32 100.0 35 ................................ ATCAACGCCCCAGCCGATCAACTCAATCGAGACAC 4267 32 100.0 33 ................................ AAGCCCGACGCGATGGACCCCGCCTATATGCCT 4332 32 100.0 34 ................................ ACCGCCTCGTTCAGGCCGGAGACGATGGTCTTGT 4398 32 100.0 33 ................................ AGCGAGGAAGCGATCCGGGCGGCAAACCCGGCG 4463 32 100.0 35 ................................ TCGATCAAGGTCGGAACGATCTTCCACGACACAAA 4530 32 100.0 35 ................................ CACCCAACAGGGTCTGGAGGGTGATCAGCTTGATG 4597 32 100.0 34 ................................ CTGACCATCACGCACCGCAACCTCGCCGAGCCGA 4663 32 100.0 33 ................................ GAGACGCCCACCGCTCCAGCAGCGCGCCGGCAC 4728 32 100.0 33 ................................ TGCGAGGAATACGCCCGCGCTCACCGGACGGAC 4793 32 100.0 34 ................................ GACCTGTCGGTGATGCCACGGGTAGAGCTGCCCG 4859 32 100.0 36 ................................ ATGCCATCCACGAGGACGCCGCCGTCCAGCTCCCAG 4927 32 100.0 35 ................................ ATCCATACCGGAGACGCCAGACGCTGCCACTCATA 4994 32 100.0 34 ................................ AGCGCGGTCTGGTATCGGACGCCGAAGTTGACCG 5060 32 100.0 35 ................................ TCGCGCACCGGCGTCAGTTTGGCCTCTCCCCAGCC 5127 32 100.0 34 ................................ CAACCCCGATCCTACGTCAAAACCGATCCACCAG 5193 32 100.0 35 ................................ TGCGAGGATTATGCCCGCACTCACCGGACGGACGG 5260 32 100.0 36 ................................ GAGGCCGCAGGAACGGCGCTGAAGGCTGCGGCCACC 5328 32 100.0 35 ................................ AACTTCACATGGTCGGCAGTCGAAAAGCTGAACGA 5395 32 100.0 34 ................................ ATCATGGCGACAATCTTATCCGCTTCCGTCGCCA 5461 32 100.0 35 ................................ TCGCCTCTCGATAAGCCCGGTCTGCATCCGCCCGG 5528 32 100.0 34 ................................ AGACACCGGAGATCGCCATGGACACCCGCATCCT 5594 32 100.0 35 ................................ CGGGTCATCAGTGGTGGCACGGCTGGAGCGACGCG 5661 32 100.0 34 ................................ GTGCTCGCGGGGCCGCTCCGATCCCGGATGTATC 5727 32 100.0 35 ................................ TCCATGTGCAGCGCGATGAAGCGGTCGCGCGAGGG 5794 32 100.0 34 ................................ ATCGGTCCACGGGGTCAGGAGGCGTCGCGTCTGC 5860 32 100.0 34 ................................ ATCGACAAGATCGACCGCAGCCTCCTCCGGCCCG 5926 32 100.0 34 ................................ GCGCGGGAATATCAGCCCTGCGTGATCTTCGCCG 5992 32 100.0 35 ................................ TATGGCCCGGCGGGCGGGAACGAGGAGATCGAAAA 6059 32 100.0 34 ................................ ACCAGCGATCCGACCACCGAGACGATGCCGACCC 6125 32 100.0 34 ................................ TTCGACAGCACTGGCCGCGCTGTCGAAGGCCCGC 6191 32 100.0 33 ................................ CATTCATCCGACCCGCGGGCAGGCTCGGGCAGC 6256 32 100.0 34 ................................ CCGATACAGTCGAGGATGTGGAAGATTTCGTCCG 6322 32 100.0 35 ................................ ATCCGTAGCTTCAACTGGTCTGAGGGAACGAAGTC 6389 32 100.0 33 ................................ CTGACGGGATACTTAGCGTTATCCGAGATCAAG 6454 32 100.0 34 ................................ ACCAGCTCGGCGAACGAGGGTTCGATCTCGTGCA 6520 32 96.9 34 ...............................A ATCGCGGCCGAGATGGCCGCCCGCCCTGAATACT 6586 32 100.0 35 ................................ CTCTGCGGGCAGGCCCGGCTGCAGGCTGATCGCGG 6653 32 100.0 34 ................................ TGGCTGGTGATGATCGACCAGCTGGAGGCGCATT 6719 32 100.0 33 ................................ ATGCCAAGCGCCACTTCCATCTCGGAGCGGATG 6784 32 96.9 33 .C.............................. TCCCCTAGTTAAATGTAAAGCCTGTTAAGGCTT 6849 32 100.0 33 ................................ ATCATCATCACGGCCACGTCCTGCACCTGGTAG 6914 32 100.0 35 ................................ ACCGAGGTCCTGAAAGACCCGTCCTTCATCGGCCG 6981 32 100.0 34 ................................ ACGGACTGCTACCGCCGCGCGAAGCGGGTGGCCC 7047 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 107 32 99.9 34 GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Left flank : ATCCGAAG # Right flank : CTACCTTGAACGCTATGAGGACAAGATCGAGCGCCGTCACTCCCCGCATGTCAGGCGTGGGCGGACGATCCGGTTCACGATGTCGAGCCATTGTCCGCCATTGGTCCGAGGACAATGGCGAGGGGCCGGGGACGTATTCCAACTCCTCGTTCGGCACGGCCCTCGGACCGGTGGCGGGCTCTTGCCTCACCATCCTCGCCGATCCGGCGCAGGCGCCCGCCGCAATCGGCGCATCGGCACCGGGTGTCAGTTCCACCTCCATCCGGGGAATATGATCCGGGATCGCACGGCGCTTCGGTTTGTCCTTCTCCTCGATGTCCGGCAGCTTCATCCGGGCGGTCATGGCAGCGGCGGCGATCTCGCTGGTCTCAAGGGCCAATTGCAACTGCTCGGCGGTCTCCGACGACGCGCCAAACCGGTGCGCCCGGTGTCCTGCCAACTGATGGCGCAGCTTCTCGATCAGGATCGCTTGCGCCTTCACCTCGGCCAGAAGCCGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8480-8842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGP010000025.1 Rhodobacter sp. SGA-6-6 25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8480 32 93.8 34 C............A.................. ATCCGCACCCATTGCGGTCTCAGCTGCTCGATGA 8546 32 100.0 34 ................................ CGGGGCATCAGGGAACCGGCCGATCCAGCGGGCG 8612 32 100.0 35 ................................ GTGCCAGCCGCAGCTTGGTCTCCGGCAGTGCGCAG 8679 32 100.0 34 ................................ CATTGACCGGGCCTTCGGTAGCGGCAGCCCCCTT 8745 32 100.0 34 ................................ GCACCTTGAAACGTGCCTGAAATGACCCGTCAAA 8811 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.0 34 GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Left flank : TGCGCATGTCAGTGACGCCAGCCGCCAGCCAGACCCGCGTATTGGCCGGAACCGGGATCACACCGTTAGCCCCCGGATCAGCCGCGCCAGCGCCTCAGGATCATAGCTGCCGCTGATCCGCATCCGGTGACCGCCCGCCAACTCGATCTCGATGTGGTTCTCGGCGGCAAGTGCCGCCGGGGCAGACCTAGGCTCCGCGACGATCTCTACGGGCAGAAACCGCGCCTCCTCTGCTGGGGGCGCAACCGAGGCAGGGTCCGGCGCATAACGGGGATCGCGCAGCCACTTGAAGATCAGGTTCGCGTTCACCGCGTAGCGCCGCGCCACCTGAGCCACGGAAACACCCGGCGCCGCCGTCTGGAAACAGATCGAACGCTTCTCCTCATCCGTCCAAAGTCGCTTCGTCCGACGCGCCACGCCATCACCATAGTGTCCACTATCAATGGTGGACACTATCCGCCTCTCTCACCCCAAGGCAGAGCGGTCAGCCCGGACGGTTA # Right flank : CACCGAGGCGGGCACGATGGTAACCGAGGCGGGTCTGGACGTCGTCCTGATGGAGACTCGGCAGGTGAAGGGCGCTCTGAAGGCCATGCCGATCAAGACAGACCGGCGAGATGCAGAGGGTATAGCCCGCCTGCTCCATCTGGGCTGGTTCCGGCCAGTTCACTGCAAGTCGGTCTCGGCGCAAGAAGTTCGCGCCGTTCTTGGCGCCCGTAAGGCGGTGCAGCAAAGCTTCATCGCGCTGGAACTATCCCTGCGGGGGCTTCTGCGGAACTTCGGGCTCAAGGTCGGCATCATCTCCCGCGGCAGGTTCGAACAACGTATCCGCGAGCTGGCGGCGGGAAATCCGATGCTGGAGGTCGCGACAGAGCCGATGCTTCGGGCGCGGGCCTCCCTGCGGCAAGAGCTGGCGGGCTTGGAACGCCGTGTCCGCTACCTTGCCCATGATGACCCGGTGTGCCGTCGACTGATGTCGATGCCCGGGATCGGTGCGGTCGTGGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15254-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGP010000023.1 Rhodobacter sp. SGA-6-6 23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 15253 32 100.0 33 ................................ CTGACCCCCTACATCAGCCAGGGGCTTTGCGGC 15188 32 100.0 34 ................................ GCGCTTGCCCCGTATCGGGTCGGGCGCGAGCTTG 15122 32 100.0 34 ................................ CGGCTTAGCCTCGGCGGCCATTTCCTCCGGCGTC 15056 32 100.0 37 ................................ GCCTTGGTCACGGCGCGATAAGCCGACTTGCTGTCAT 14987 32 100.0 35 ................................ CTACCACATCGTCATCCCAATCTGGGTGGTGGCCC 14920 32 100.0 34 ................................ GGGGTGGAGGACGGGGAGCACGGAAACCTTGTTT 14854 32 100.0 34 ................................ ACACGACCCGCACGATGCTGGATTTCGAGGTCAC 14788 32 100.0 34 ................................ CTTGAGGCTTGGGGCGCATGGGACAGCCGCCGGT 14722 32 100.0 36 ................................ GATCACCACCGGATCAGCGCCGATCATCCAGCCGAT 14654 32 100.0 34 ................................ CTCGGACTGTTTCGCGCCGCTGTGGCAGGCGGTG 14588 32 100.0 35 ................................ GTCGACAGATCGGCCCAGATTCGGATTGACCAGCG 14521 32 100.0 34 ................................ AGGTCTCGCCCCGGCGGGCAGGGCACGATCTGGG 14455 32 100.0 33 ................................ GGCGGCGGGCGTCGGCATCGCTGCCGGACCTCC 14390 32 100.0 33 ................................ GTCTTGAACGGGCGGATATGCGGATCGGCTTCC 14325 32 100.0 34 ................................ AGCGCATCGTTGGCTGGGCGCATGACCGGACCAT 14259 32 100.0 34 ................................ AAGTCGCCGAGGAAATGCAGGATGTCGCCCCGGT 14193 32 100.0 34 ................................ GAGTTGCAGGCCGTCTCTGTCGATGCGGCGGATT 14127 32 100.0 33 ................................ CAAGGCGGCAACGAACGCCATGGAGCAGGCAAA 14062 32 100.0 34 ................................ CATCTTCGCCAGATGATCGTCGGCGATGCCGCTC 13996 32 100.0 34 ................................ CTGGTTGAAAACGCGGGTGTCCATGTCTGTCTCC 13930 32 100.0 35 ................................ GGCCACGGCAACAAGCCGGGCGCGCTCGGCCACGG 13863 32 100.0 35 ................................ TGGAAGCTGGAGCACGACACGCAACCCGACATGGA 13796 32 100.0 33 ................................ AATCCCGATGTCGTGGCGGTCGAGGGGCCGGCG 13731 32 100.0 34 ................................ GGCGCGTCACGCAGCATCTCCTGGCGGTTGACGA 13665 32 100.0 35 ................................ ATCGACCGTCTGGAGGTCGAACCAATCGCAGTCGT 13598 32 100.0 34 ................................ CGTGCCGCTGTCCAGAACAGCGCGGGCCTCGGCG 13532 32 100.0 34 ................................ GTTGCCGATCAGGCGGGTCGTGCCTTGCACACCG 13466 32 100.0 33 ................................ GTCAACAAAGGACAGCTTGTCTTCGCTCATCTC 13401 32 100.0 36 ................................ TGGGATAAAACATGAGGGCGCACCCGATGTTGGACT 13333 32 100.0 34 ................................ TACGGGCGCTATGTGTCGGCAGAAGAAGCAGCTG 13267 32 100.0 36 ................................ CCCCACAACTGGCGTGATCGGCCCGAACGGCACGGC 13199 32 100.0 34 ................................ CCACCCGCATGGCGCGGGCGGCCGAGGCGGTCGC 13133 32 100.0 36 ................................ TTCAACTGTCATGTAACCACTCCGCAGGAATGTGAC 13065 32 100.0 36 ................................ ATCTCACACCCCCATCGTCTTGATGATGACGCGCGC 12997 32 100.0 32 ................................ ATAGCGCAGGACCACCCCGGCAACAGCGCCTC 12933 32 100.0 34 ................................ CCCGTCGATCTGCACGTCGCCCGCCTCGATCAGC 12867 32 100.0 35 ................................ AGCCAGCACACGCGCGGGCATGTGCCGGACTGGTC 12800 32 100.0 34 ................................ CATGTCGAGACCTACGATCTGTGCCTGCAACTGC 12734 32 100.0 35 ................................ AACAGCATCGTCTTCCTCAACCGCAGCATCCGCGC 12667 32 100.0 34 ................................ CACGCCAGATTGTAGCTGACGCGGTTGCCGTTGG 12601 32 100.0 36 ................................ GCCGATTATCCTGCCGGGACCACGGATTTGCGCAGC 12533 32 100.0 35 ................................ CCGGCTTTGGCGATCCAGTAGTTTCGGAAGCGGTC 12466 32 100.0 34 ................................ AACAAGGGCGAAGTCTGCATTCAGGGCACGGACT 12400 32 100.0 34 ................................ AAGTCAGAGTTGATCTCGCGCATTGCGAGCACTC 12334 32 100.0 34 ................................ CGGTTTCGGCTGTCCGCATCACGCGCCCGAGCAC 12268 32 100.0 33 ................................ ATGACTGAACGGAAGATCGCCGTCCCCGAGGCC 12203 32 100.0 34 ................................ TGACATCCCCGACGGCGCGGCGGGTGATGCCCGC 12137 32 100.0 34 ................................ AGCGCCTCGGCGATCGCACGGGGGCTTTCACCTC 12071 32 100.0 33 ................................ GCCACCTTCCGCAATCGCAGCTCGATGGACAAG 12006 32 100.0 35 ................................ ATCGGTGTAGATCACCCTGCCATCCGTCTTGAGGC 11939 32 100.0 35 ................................ CTGTGCAATCGTGGGATCATCCCCCCGCACATGGC 11872 32 100.0 34 ................................ GCTGACCCCGCTCACGCAGCCAGTCACGCAAAAT 11806 32 100.0 34 ................................ TCGAATGCCTCAAGCTCCTCCCCGCTCATGCCGG 11740 32 100.0 34 ................................ CCACAGCAAGAAGGCTGGCGAAATCTACGCCCAT 11674 32 100.0 35 ................................ AGGTGGATGCGGCGCAGGACCGGGGCCTCCTCGGC 11607 32 100.0 33 ................................ AGTATCGCCGCGATCAGCGCGGAAATCCAGTTG 11542 32 100.0 34 ................................ ACCAGCAGCTCATGCGGCAAGTCGGTGCCGGCGC 11476 32 100.0 35 ................................ GGCAGCCTCTCGCCAGCAGACGCCAGCGCGATATC 11409 32 100.0 33 ................................ ATGGCGGCGAGGAAGCGATCCCATGACGCGCCC 11344 32 100.0 34 ................................ GCACGAGATCCCGCGACCGCGCGCGCAGCAGATC 11278 32 100.0 34 ................................ CTCAGCCGACAGCGCCGCGAGGTCGAGCTTGGTC 11212 32 100.0 35 ................................ CCCCGAACCCCGGGCAGGTGGATTGCCTCCCGCCT 11145 32 100.0 36 ................................ TTCCTAGATGTTGAAAGAGACGGGAGGGAAGGGAGG 11077 32 100.0 34 ................................ CCGGAAAGCGGGCTGGCGGGGCGAGGCTGTCCCT 11011 32 100.0 34 ................................ TGGTCCTGCGCAGCCAGGAACAGTCCGACCGCCT 10945 32 100.0 36 ................................ TCGCCGCAAGCCTTCGATCTTGTCGCCGGGTCTGTC 10877 32 100.0 37 ................................ CGCCTCCGACAGGATGCGCTCGTCCTCGTTGGCGAGC 10808 32 100.0 35 ................................ AGGCAGAGGTTGATCTCGCGCATTGCGAACACGCG 10741 32 100.0 35 ................................ ATTTGCAGATGACGTGCGCCGGGAGCTTTCGGAGA 10674 32 100.0 35 ................................ ACCTGGTGCGCCTGTGGTCCACCCCGATCAACTGG 10607 32 100.0 35 ................................ CCGCCAAGGCCCGTGCCGCACTGGACAACAACAGC 10540 32 100.0 34 ................................ GATGTCCTGGTGGTCGAGGCGCTCGATCGGCTGA 10474 32 100.0 36 ................................ CGACATGGTGCTGCCGTGCCGGTCGCCGGGGAAATC 10406 32 100.0 35 ................................ CGGCCATGCGCTCTGCTGATGGCGCATGCAGTAGA 10339 32 100.0 34 ................................ CGTCGCTACCATCGCCGCGAAAGCCCGCATGTCG 10273 32 100.0 34 ................................ AGGTCATCCGCGAACGCCTTGGCCTCCCGGTGCG 10207 32 100.0 35 ................................ AATTCCTGTCATCCCTACTCCCCTTTCTCCAATAG 10140 32 100.0 35 ................................ TGCTGCTTGAGTTGCTGCGCTCCAAGCGTCTCGTC 10073 32 100.0 34 ................................ AATCCCTGTGGCCCCATAGGCCCAACCGGCCCCT 10007 32 100.0 36 ................................ ACACTGCTGGAGACGGCTACCGGCAGGGCCCGCACG 9939 32 100.0 35 ................................ CGCCCTCGGCATGGAGCCGGATGACCGGCTCAAGC 9872 32 100.0 35 ................................ CTCAACCGCAGCAGCCGCGCATACGATGCAATATC 9805 32 100.0 34 ................................ TGACATCCAAAGAGCCGCAGTTATGTTTTCCCTT 9739 32 100.0 34 ................................ GCCCATCTCGCGGACCGCCGGTAATTTTCGATCA 9673 32 100.0 34 ................................ CCCGAGTTCGTCAGCCGGGCCGAAGCCCTCGGCG 9607 32 100.0 34 ................................ AGGGCCAGTTGCAGAAGGCGAACCCTCGAACGCT 9541 32 100.0 34 ................................ CCCGGAGGGCAGCCCTTGATCGGGACGATCATCC 9475 32 100.0 34 ................................ AGCAGGGCAACGTGTTGAACCGCATGAAGGCGGA 9409 32 100.0 35 ................................ TCCTGCCAGCGCGAGAGCATCTTCAAGGCGGTGCG 9342 32 100.0 35 ................................ TGGCATGGGCAGATGGATGTGACCAAGGACCCGAC 9275 32 100.0 35 ................................ TGCCGTCGATCAGGGTCTGGGTGAGATAGGGCGGC 9208 32 100.0 34 ................................ CGGGATTACTGGACTGCCAAGGCCGGTAAGGACG 9142 32 100.0 34 ................................ TGGCCGCCTCCTTGCCGAAAGGCTCAACCTCTCG 9076 32 100.0 34 ................................ CAATGCTCCGCATCATCGTGTCGGTCGGGCGCGT 9010 32 100.0 34 ................................ GCAGGATCGGTGGTCGAGGCCTTCGGCGCTGGCG 8944 32 100.0 35 ................................ AGGCAGCAATCGCGGAGGCGGGCAGCATGATGACC 8877 32 100.0 34 ................................ AGCCCGACCGTCGAGCATGGCCGGGAGCTTTGCG 8811 32 100.0 34 ................................ TGCCTGATCCCCAGCGTAGGCTGCACCTCGGCGT 8745 32 100.0 34 ................................ ACTGGTCGGTTCCAGCGCCGAGAGGCGACGACGG 8679 32 100.0 34 ................................ GTCCGAACCATCCAACAACAGGACGTTGCTCATC 8613 32 100.0 33 ................................ GGATAAGGGAGGCGGTTGTGGACGCGGAAATGT 8548 32 100.0 34 ................................ ATTTCACCCTCCCCGCGAAAAGGCCTGGTAGGCT 8482 32 100.0 33 ................................ CCATTCGAGATTGTGATAAACCCAAATGTAGTT 8417 32 100.0 35 ................................ TCTCTGTTCCTTGTGGATGCACCGGCATTCCCGGC 8350 32 100.0 35 ................................ ATCGACAGCAACGATGGATGGGGTGGGGCGTTCGC 8283 32 100.0 33 ................................ CCGCTCGTAGGGGCAGGCCGCGCCACGCATCCA 8218 32 100.0 34 ................................ GTCCTCGTAATGGCGGATCAGGGCGAGGAGCCGC 8152 32 100.0 34 ................................ GCCAGCCCCTCGTAGGAGGTGGCCCCGGAATAGG 8086 32 100.0 34 ................................ ATCGTGTAGCCGATGGCCGCCAGCATCGCCTCGC 8020 32 100.0 34 ................................ TGGATCAGGTCGATGGTCCGCGCCGCCGCCTCGT 7954 32 100.0 35 ................................ GGGGCGCGGGGCACGTCTTGGCTGATCGACCACGG 7887 32 100.0 35 ................................ GCCGGATCATCGACCAGCCTGAAATCCGACCCCTT 7820 32 100.0 35 ................................ TGGCAGATCGTTGGCGGGCAGGTGTTCATCCTCGA 7753 32 100.0 35 ................................ GACATGGCGGACGTGAACGACGTTCTACTGCAAGT 7686 32 100.0 33 ................................ CTCGATAGCCATCCCTTGCGGAGACGAATAGTC 7621 32 100.0 33 ................................ TCTGCCGGATTGGGCGGTCTCGGATTTGGCCTT 7556 32 100.0 36 ................................ GCCGATTATCCCGCCGGGACCACGGATTTGCGCAGC 7488 32 100.0 33 ................................ ATGGCCGAGCGGGCTGCGGACGGCAAACCGCAG 7423 32 100.0 33 ................................ CCCGGCGTTCGGCTGCTGGTGCGGTCGGCCACC 7358 32 100.0 35 ................................ CCGGACTGGACGCGCGTCCTGCCGGCGCAGCAGCC 7291 32 100.0 33 ................................ CAGGCCATTGACGCGATGGGGCTCTCCGGCCCC 7226 32 100.0 33 ................................ CGCGGTGCGGAAAGGGACATGCCAGAGCATCAC 7161 32 100.0 34 ................................ TCGGCGTCCTTGATGCCCTTGATCAGGGCGTCCA 7095 32 100.0 36 ................................ AGATCGCAAGACCAGGCGTCGTGTCCAAGCGCGCTG 7027 32 100.0 34 ................................ AAGGCGAAGCAAGCGGAGGGCGCAGCATGACCCA 6961 32 100.0 34 ................................ TTCACACAACCCCGCCTCGCCTCGCGCGGGGCTT 6895 32 100.0 34 ................................ CTGAAAGCGCTTGCCGCCCATGGATCTGACGCTC 6829 32 100.0 35 ................................ AACGTGATCTGCAAGACCGGCCCCGGCGAATACAA 6762 32 100.0 34 ................................ ACCCACACTCGCTGACGCCCTCTCGGAGGCTCGC 6696 32 100.0 35 ................................ GTCTGCTGCCCGCGCCGCGCTGGCACGGACGGGGG 6629 32 100.0 36 ................................ TACCACGAAAGCGAACTGGATGACGCAAGCAGGCCA 6561 32 100.0 36 ................................ AGGATGGTTGGCAGGCGCCATCAGCGATGCGTCCAC 6493 32 100.0 33 ................................ CCCCGCTTTGAGTTGAAGGGCGGCGCGGGCCGA 6428 32 100.0 35 ................................ ACACCACCGCCAGCACGTAGATCGTCATCCCGACC 6361 32 100.0 34 ................................ CAATCGTCCCGAATACCATCCCGATATCCGCCGC 6295 32 100.0 34 ................................ GGTGCCTGCACCCGCTTGTCGTCGGCAAGGTCCA 6229 32 100.0 35 ................................ CTGCACGAGACTGTCGAGACGGGTATTGTCAGCAC 6162 32 100.0 34 ................................ ACTGGTCCCAGACCAACGCGAGGTCGGTTCTCGC 6096 32 100.0 35 ................................ ATCCAACCCCGGGCCAACCTGCCGAAGGGCGCGAC 6029 32 100.0 34 ................................ GGGTCCGGTCATTGGTCAGCCTCCGTATCGCCGC 5963 32 100.0 34 ................................ AGCAACTCGGCCAGCGTGTATTCGTCCTCGTCGC 5897 32 100.0 34 ................................ CTCGGCAACCGGGTGGAGCGGGTAGGGGCCTCGA 5831 32 100.0 33 ................................ CTCAAGATGCTCCGCGGCTTCGGCAAGGACGTG 5766 32 100.0 33 ................................ GGTGCTGGTGAGTCGGTTGGTCGACCGCCCCGA 5701 32 100.0 34 ................................ ATGCCCATGCTCCGCGCCATCGTCTCGGTGGGCC 5635 32 100.0 34 ................................ GAAATAGCACTGTCGGCCATCCGCGAATCGCGGC 5569 32 100.0 34 ................................ ACCGCCGACGCCGACGACATCCTCTCGGCTCTGC 5503 32 100.0 37 ................................ ATGAGCCATGAGAAGATGAAGATCGGCGTGAAGGGCC 5434 32 100.0 34 ................................ CATATGACCAGGAAGCCCGGTGACGTCGTCACAA 5368 32 100.0 34 ................................ GGCATTGTAGTAGAGGACGCGGAGAGGATCGCGC 5302 32 100.0 35 ................................ TCGTGCCCCGCATATGTTGGGTAGGAGACGGCAAC 5235 32 100.0 34 ................................ CAGCACCCGCTGCCCGGGAAGACGGTAGACCATA 5169 32 100.0 34 ................................ CGTGAGTCTTCATATCGACAGCATCCGCATTGAC 5103 32 100.0 34 ................................ GTTCAGGGCGGCACTCAGCTTTGCGCCCATGTCG 5037 32 100.0 34 ................................ ACCTCCGCCCTCCCCCGATAACACCCATCAGGCA 4971 32 100.0 33 ................................ ATGCGCGGTCCCCCTTGATCGGGGGCGGGGCGG 4906 32 100.0 36 ................................ CTCGGCGAGCGGGTCTGGCGGATCGAGGCAGAGGGC 4838 32 100.0 33 ................................ ACTGGATTTGCACTCCGCGCAATCACGCAGCTT 4773 32 100.0 34 ................................ CACCTATCGCAGACAGTGATGCCCCTGCCACCGT 4707 32 100.0 34 ................................ TCGGACACCTCTCCGTCGAGCAGATCACCGCCGA 4641 32 100.0 34 ................................ CTCGATACCGTCCCGACGCCCGATTTCGACCGTG 4575 32 100.0 34 ................................ GCGGCCAACGCGCTCGGTCCGCAGACGTATGATG 4509 32 100.0 34 ................................ CCTACCATGACCGCCTGACCGACAAGTATCAGGC 4443 32 100.0 34 ................................ TGGGCTGGGAGGGCATCACCGACAACGGCAAGAC 4377 32 100.0 35 ................................ TCGCAGTGAGGATAGGCCCGATGCCCGGACCTACA 4310 32 100.0 35 ................................ AGCGGCGATGCGGGCGCGTGAGGCCGGGTGGCAAG 4243 32 100.0 34 ................................ AGGAAAAACCACCGGAGGGCGGCATGATGCACAT 4177 32 100.0 35 ................................ GCATGGCATCACGATCCGCTGTTGCGCGGAAAAAC 4110 32 100.0 35 ................................ GCCCATGACCCTGACCACCTCCATCATCACCGGCC 4043 32 100.0 35 ................................ AATCTCAATCTTTCACCCGCCTGATGGAGGGCAAC 3976 32 100.0 34 ................................ ACCCCGCCACCGGCCAGCCGATGGAAGTCTTCGC 3910 32 100.0 35 ................................ TCCGGCTGATGATCGAGGTGCGCGACGGTCAGCAC 3843 32 100.0 35 ................................ ACCCTGCCTGCGCGAGAAGGGTTGCGGGCCGAGTG 3776 32 100.0 35 ................................ ACGACCTGCGCGGGACGGCCGTCACGCGACTGGCT 3709 32 100.0 34 ................................ ATGACCTGCTCCTGCCGCTGAGGCCGACCCGGTA 3643 32 100.0 35 ................................ GGGGCGGTGCATGTCCGGGTCGCGCAGGACTTCCC 3576 32 100.0 34 ................................ GACTGGAGGGATGTGGCGGGCATCACTGCCGCTG 3510 32 100.0 34 ................................ GCCAGCAAGGATGAGACGCGCTATTACCTGAACG 3444 32 100.0 34 ................................ ATCCGCTGTCGATCTCCCTCAAATGCACAGCCAC 3378 32 100.0 34 ................................ CGCGGTGCGGAAAGGGACATGCCAGAGCATCACG 3312 32 100.0 35 ................................ ACCTCCGCCCTCCCCCGATAACACCCATCAGGCAG 3245 32 100.0 34 ................................ ATCTGGGCTTCATTTTCGACGGCGGCGCCGTCAG 3179 32 100.0 34 ................................ CAGAAGCGGCTTGATCACCCTCGACATGCTGCCC 3113 32 100.0 34 ................................ ACCGTCAGCCGCCAGCGTCGCCCCTCCACCGGCA 3047 32 100.0 34 ................................ ACTGCGCGCGGGCACGACGCTTGGTCATGTGACC 2981 32 100.0 37 ................................ ACCCCAACAGAACCTGCGTCTATCTGGAGGGTCGCGC 2912 32 100.0 34 ................................ AGGACGAACAAGCCATCGTAACCCAAGCTCGTCT 2846 32 100.0 34 ................................ GACCAGAAGCCCGAGAACTACACCGCCGATGGTG 2780 32 100.0 33 ................................ CCGGGATTTCTGCGGCGTGGTAGTGAAACAGCG 2715 32 100.0 34 ................................ TCGACGCGGATGTATTTCACGTCCCCGCCGCGCT 2649 32 100.0 33 ................................ TTGTCGTATGCCTTGTAGGTAGCCCCTTCGGTC 2584 32 100.0 34 ................................ GAGGACATCCACGGAGCCTGAGTTTCTGCCCGGG 2518 32 100.0 34 ................................ ATGAGGTCACGGACACCTCGGCCCTCCTGCGCTG 2452 32 100.0 34 ................................ TTCGCGCCCTTGGTATACGCCGCCTGCTTCTCGA 2386 32 100.0 34 ................................ CAGAGCAACACATTGAAATCATTGGCGACCCCGG 2320 32 100.0 33 ................................ TGCGTTCCCCACGCGAGGTTGTTTGCCCTGTTG 2255 32 100.0 35 ................................ CTGTGTGGGGTTTGTGGTGGGGGTCAGTCCCAGCC 2188 32 100.0 34 ................................ TTGGCAATGACATATACGCTTTCGACCACCGCGC 2122 32 100.0 34 ................................ CCACACCTCGCGGGCGTCCTCGATGGCGCAGGCG 2056 32 100.0 35 ................................ CCTCAGGCAGGCGCTTGGGCGGGGTCCATTTTCCC 1989 32 100.0 34 ................................ TGTATCAAGTGCCGCTGTCGCAACCCTGCGGGCT 1923 32 100.0 34 ................................ CACAGCAAAGGCTGGCGCGAAGTCTGCGAATACG 1857 32 100.0 34 ................................ AACCTTGGGGCGGGCAACCTGCGGAAGTCCACGC 1791 32 100.0 35 ................................ CATGCTGTCGGGCACCTCGGCCCCGTCCACGGCAC 1724 32 100.0 33 ................................ CTGGCGGCGGGAAGGGCAACGCGAACCTCTATT 1659 32 100.0 35 ................................ CAATGCGGGTGCAGGTCGTCCAGCTCGCCGTGATC 1592 32 100.0 35 ................................ CCCGCCCTCCGCTGCGAACATGTCAGAAACCGCCC 1525 32 100.0 34 ................................ CACGCCGCCGACTCGGGTTGCCGGTGGGTGATGC 1459 32 100.0 35 ................................ GTCGGTCATCTCAAACCTCAATCATGATGACGGGT 1392 32 100.0 34 ................................ CAACCGCTCAAAACCATCCGACGCAGAAGCGCCA 1326 32 100.0 35 ................................ CTCAAGTGCTGCGACGATCTCGCCGATCAGGTCGG 1259 32 100.0 35 ................................ GTATTCCTCGACGGTCTGATGGGCGATCCGCATCA 1192 32 100.0 33 ................................ CCCCCCGCAACATGAGTGGATTCCAGTGGACCA 1127 32 100.0 34 ................................ GCACCACCTCGGCGCAGATGCGCCGGGCGCTCGG 1061 32 100.0 34 ................................ GCGCGCCATACAGCGGAATCTCCAGTGATCTGGT 995 32 96.9 35 T............................... TTGCAGAACAGCCCGTCTTCCTTTCGCTGGATCAC 928 32 100.0 33 ................................ CGCACCTCGATCACGACACCCGTCCCGCCTTCC 863 32 100.0 34 ................................ CTTCACGTTCCTGAAGCCTGCGCGCTCGCGCGCC 797 32 100.0 34 ................................ AGGATGTCGCGCAGGCGATCCCGGCCCCATGAGC 731 32 100.0 34 ................................ CACAGCAAAGGCTGGCGCGAAGTCTGCGAATACG 665 32 100.0 35 ................................ ATGAGCCATGAGAAGATGAAGATCGGCGTGAAGGG 598 32 100.0 34 ................................ GCCAGCCGGTCGCAAGGCGGGTGCATGACGGCCA 532 32 100.0 33 ................................ CCGACCCGGACGGCCGCGCGCGTTGGTCGTTTT 467 32 100.0 33 ................................ CATGATCGCCGTCTTCGATTCCTGAAACCGCTC 402 32 100.0 35 ................................ GATATAATCCCCCTTCGGCCCGTAAGCCTTGGCGG 335 32 100.0 34 ................................ CTCCACCTGCATTGCCGCTGCGGTCATGACGGCC 269 32 100.0 34 ................................ AGCGCCGGGACCGCCTATCGCAAGGGCGATGCCG 203 32 100.0 35 ................................ AGCGCCGTTCCTGCGGCCTCGAAGGCCGCCATCGC 136 32 100.0 37 ................................ GGCGACGGTCCGCCCCGGCGGCGGCTCATGCAGCCAG 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 230 32 100.0 34 GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Left flank : ATCCGCCCTGGTTCTGGAGCTAGCGATGCTGGTCCTCGTCACCTATGACGTGAACACGCTGGAGGAAGGCGGCAGGAAACGCCTGCGCCAGGTCGCCCGCGCCTGCGAGGACTGGGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTCGATCCGGCGCAGTGGACCAAGCTGAAGGCCCGGCTGGAGGGGATCATCCGGGTGGAACACGACAGCCTGCGCTATTACTATCTGGGCGCCAACTGGGTCCGCCGGGTGGAACATGTCGGCGCCAAACCCGCCACCGATCTGAACGGCCCGCTGATCATCTGAACTGCCCTGCGAACCACAAGCGTGCCGGATTTGCAGCCCAGGTTCGCAGCCGTGCCAGCTCTTTGAAATCGTAAGGTTCTCTTTCTCCAGACGCGGGCAGAAGTCTTCAGGTTCCGCGCTTTAGCCTGTTATCCGCATTTTCGGACGGATTTACCTATGTTTACAAGTCGGTTACTTGCTTGGA # Right flank : CTGCTGCGCATCATCGGTCAGACCGGCGATCCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //