Array 1 201190-202315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOL01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 162 NODE_1_length_381636_cov_12.3371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201190 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 201251 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 201312 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 201373 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 201434 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 201495 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 201556 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 201617 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 201678 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 201739 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 201800 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 201861 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 201922 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 201983 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 202044 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 202105 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 202166 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 202227 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 202288 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218574-220680 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOL01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 162 NODE_1_length_381636_cov_12.3371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218574 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 218635 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 218696 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 218757 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 218819 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 218880 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 218941 29 100.0 32 ............................. GGGCGATATCCACGCCAAAGGGCCGCGCGACA 219002 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 219063 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 219124 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 219185 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 219246 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 219307 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 219368 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 219429 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 219490 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 219552 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 219613 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 219675 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 219736 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 219797 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 219858 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 219919 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 219980 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 220041 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 220102 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 220163 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 220224 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 220285 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 220346 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 220407 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 220468 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 220529 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 220590 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 220651 29 89.7 0 A...........TC............... | A [220677] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //