Array 1 55802-53911 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJSX01000007.1 Pasteurella bettyae CCUG 2042 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 55801 32 100.0 34 ................................ CTCGGTGTAATGATGTAGTTTTAAGCCGGAATGA 55735 32 100.0 35 ................................ ATACCCTCACCTTTATACTTTAGTTTTAAATATAT 55668 32 100.0 34 ................................ TCGCATTAATGGGAAAAGTGATTGAATTGAAAAC 55602 32 100.0 35 ................................ TTAACAAGCCAGCTATTTTCTCCGCCTTGAATTAA 55535 32 100.0 35 ................................ TCATTGCGTGGCGCACACCTGATTGCAATGTTTGC 55468 32 100.0 34 ................................ TTTCAGCGTGTTAATTAATGGGCGGTTCCGTTCC 55402 32 100.0 33 ................................ AATAATTGGTTTAAATATCCAGATATCCCCCAA 55337 32 100.0 33 ................................ CAATGTGTCGATGTTACCGTCAAGGCTTTCTTG 55272 32 96.9 35 G............................... AAGCTGAATAGCTCAAGGTTTGGCTTGAGCCTTTA 55205 32 100.0 34 ................................ AGTTTTACTATAGAAACTAACACTGGATATTGTT 55139 32 100.0 34 ................................ TTCAGTACACTATCAAAAAATTCTATCACTTTGC 55073 32 100.0 33 ................................ TTGCTCGGTCAAACTTATGGACGATTTAACGGC 55008 32 100.0 33 ................................ CTACTAAAGATATAGGTAAGCCCCCATCTTTAA 54943 32 96.9 35 T............................... GGTTAAAATCTCACTATCGACCAACCCGACTAAAA 54876 32 100.0 36 ................................ TTTAACACCTTTGATTGAGGTAAAAGATTTTACTGA 54808 32 100.0 35 ................................ ATAGATTGGCGTATCGTGATCCCATATCAATAAAC 54741 32 100.0 34 ................................ GGATCGGTTGCGACATTTTCAGTTATTACTAATT 54675 32 100.0 34 ................................ CACAAGTTACCGCTACGCTTCAACAGGTTTACCC 54609 32 100.0 35 ................................ CACTTGATCAAGGGTGCTTGTGCCGACGGTAATCA 54542 32 100.0 35 ................................ TAAGCAATAGGTTACAAGTTAGAATCTTGTATAGG 54475 32 100.0 34 ................................ CAGTATAAGGTTAAAACGCTCTCATTGACGATTT 54409 32 100.0 35 ................................ GGGACTGACGGGGTAATAAGTCGGGTCTAGTGTGA 54342 32 96.9 35 .....A.......................... CAGCCTGTGTTAGTGTTGGTCTTAATTTTTAACAC 54275 32 100.0 34 ................................ TTTGGTGATGACATATTCGCCACGGTGGACGATA 54209 32 100.0 36 ................................ CCAAAACGCGTTCAGTCATGTGGCTGATTTCAAAGT 54141 32 100.0 35 ................................ TGCCAGTATTGGCTTCGCTGCTATCGTAAACAATC 54074 32 100.0 34 ................................ CAATAATTGTTGGTCATCTTCTGATAAACGATTT 54008 32 100.0 34 ................................ AATCGAAAATGCGACCTTGGTTGCGTGTTCGTGT 53942 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.7 34 CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Left flank : TGTACATACTCTTAAGGAATACTCTATGATGATTTTAATTACCTATGATGTATCGCTCGAAACTGAAGGTGGACAACGTCGTCTTCGGCATATTGCCAAACATTGCCTTGATTATGGAATCCGCGTACAATATTCTGTCTTTGAATGCGAAGTAACTCCTGCTCAATGGGTTGAACTCAAAGATAAACTCCTCAACACCTACGACAGTGAAACTGATAGCTTGCGCTTTTATCAACTCGGTGCAAACTGGAAACACCGTGTCGAACATCATGGAGCTAAAGCTGCGATAGATATTTTCCGCGATGTGTTAATCATTTAGTCCATCGCTAACCCTCAGTTCTCATCAAATCTATCACCGATTAGCGAATTTATTTTTATAATAAAATTAATGAGTTAAATTTCATTATGATTTGTTGATATACTGAGCCCTATTATATCTGGCATGATTAGCGAAACCTCGCTTTTCAAACCAGATATAACGTGCCACTATCAATATAGTA # Right flank : AACGGAATGAACCACCCTGCTATAGTGTTCGGTGTTCCTCATTTTACATAGACATAAGAATTGAAACTATTACTATCACTCCATGCCTATGTAACTGATTTTTATGCTGACAATTAAGCATAATTTAAAACAACTGCTCAAAATGCAACAGATGTTAATATCAACCTCTACATCGTTAAGTAATAATTTACTGTGTTATTAAAAATAGGAATACGTTAAGTTAAACTTTCGTTAGCTTGGATGTTAAGGTAAAATATTCTAATCTTTTTATTACACTGAGAACTTTATGGCATACACTACTTTTTCCCAAAATAAAAATGACCAATTAAAAGAACCTATGTTCTTCGGTCAAAACGTTAACGTTTCACGTTACGATCAACAAAAATATGAAACTTTTGAGAAACTGATTGAAAAACAACTTTCATTCTTCTGGCGCCCTGAAGAAGTCGATGTGGCACAAGATCGCATCGACTATGCCGCATTACCAGAACATGAAAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //