Array 1 63701-69402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034929.1 Nocardioides sp. HY056 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63701 29 100.0 32 ............................. TCTTCGGGGGAGTCGAGCCACTTTTTGAAGTG 63762 29 100.0 32 ............................. GGATCAGTGGCGTGCGTCGCTGAAGAATCTCC 63823 29 100.0 32 ............................. CTGGGGCTGCCCGTGCCGGTGACCTATGACCG 63884 29 100.0 32 ............................. GTGGTGTGCGCGGTGGTCGTCGGCTCAATGCC 63945 29 100.0 32 ............................. ATGGGGGCGACGGCCTCGCCGGATGAGGCGGT 64006 29 100.0 32 ............................. AAGACTGGCCCTGAGGTTGCCGAGACCTTGGG 64067 29 100.0 32 ............................. AGTTCGACGCGCTGGCCGGGCCAGTTGTCGGA 64128 29 100.0 32 ............................. CAGCATCCTGAGCGGCGAGATTGCTGCTCAGG 64189 29 100.0 32 ............................. TGGAAGCCTCGGCACTTCAGGTTCTGGTCGAA 64250 29 100.0 32 ............................. GGATCAGTGGCGTGCGTCGCTGAAGAATCTCC 64311 29 100.0 32 ............................. CGGAAACCAGGGGACGTGTACGTGCGCTCCGT 64372 29 100.0 32 ............................. TTGGTGACCTTGCTCTTGTCGATGTGGCCGTA 64433 29 100.0 32 ............................. TGAGGAACGGCACGCTCACCCTGGCTGAGGCC 64494 29 100.0 32 ............................. GACGGGAGGGTGGCGTGAGCCTGACTCTCAAG 64555 29 100.0 32 ............................. ATGAACGCGGCGAGCGCGTACAAGCTCCGGTA 64616 29 100.0 32 ............................. GCGCACATGACCGGTGTGGTAGTGATCGGCGC 64677 29 100.0 32 ............................. GTCCGCGGGCGGGTACTCCACCGCGGGAGTAC 64738 29 100.0 32 ............................. GCCATGACCACCCGCGCCGTGCCCGGCGTGTG 64799 29 100.0 32 ............................. GCCCTCGCTACCTCCGAAGCTCCAGCGGCATC 64860 29 100.0 32 ............................. CACTGCGACGCAGACGCGTTTGCAGTACCCGC 64921 29 100.0 32 ............................. GACACCGGGATGGTGCGCTCCTTGTAGTAGTC 64982 29 100.0 32 ............................. GTGCCCACGGACACCGAGGTAACGGCCGTGGA 65043 29 100.0 32 ............................. CGTCCACGGTCGTTTCCTGAGCGTGAACGGGC 65104 29 100.0 32 ............................. AGACTGAAGCGCTTCTCGCCACCCGTGAGTCC 65165 29 100.0 32 ............................. CACTTCGATCACGTCCACGTCTCCTTTAAGCC 65226 29 100.0 32 ............................. AGCGCGAACACCTTCGGGCAGCAGTTCGATGA 65287 29 100.0 32 ............................. ATGGTCGCCATCTGGCGTGACTCCACCGGTGC 65348 29 100.0 32 ............................. GCCTGGCAGTTCTTCAACGTCTCCACGTCGTG 65409 29 100.0 32 ............................. CAGACGGGGGACGTCGCCGCCACCGAAGATGG 65470 29 100.0 32 ............................. CATCGTTCCGCCCACCACAAGCGATGTCGCCG 65531 29 100.0 32 ............................. GCTGAGCGTCAGGCCTACCTGACCCGTGGTCT 65592 29 100.0 32 ............................. TTGATCTCCAGCGTCACCCACTATCGCTCTCG 65653 29 100.0 32 ............................. CTGGGTGCACTGAATTACTGGCTACCGCTCTC 65714 29 100.0 32 ............................. ACCTGCCCCATCCGCACCGACTGCCTCGAATG 65775 29 100.0 32 ............................. TCGGTAGAGCGTTTGCCACCCATGAGGCTGCC 65836 29 100.0 32 ............................. TCGGTAGAGCGTTTGCCACCCATGAGGCTGCC 65897 29 100.0 32 ............................. CTCTTCATCGCATGGGTGGCACTCGCATGACC 65958 29 96.6 32 ............................G ATCTCATCACGCCGGCCCAGCTCGCACGAGCA 66019 29 100.0 32 ............................. CTACGACCCCCTCGCGGGGATCTACTGACCCG 66080 29 100.0 32 ............................. GCTTTTTCGGCGTCGCTGACCTTGATCGCGGA 66141 29 100.0 32 ............................. GCGCCCTGCAGCATCCCAGCGCCGAGGCGCCC 66202 29 100.0 32 ............................. AAGCCCGCCACCGCCCCGGTCACGATCCCGCT 66263 29 100.0 32 ............................. GCTTTCTCCGGCTCGATCCGTGCCGCCATGGG 66324 29 100.0 32 ............................. CCGTCCGGCAGCCTCAAGCGATACCTCTGCAC 66385 29 100.0 32 ............................. CGGCACCCGAACCCGCTGATCTTCTACATGGG 66446 29 100.0 32 ............................. TTCGTCAAGTAGCGGCTGTGTGCCGCTTCTAC 66507 29 100.0 32 ............................. ATCGACGCGGCCAAGGCAGCGAAGACGAACGC 66568 29 100.0 32 ............................. CTGGACAAGATCGCCGGCGTCCCGTCGGCCAT 66629 29 100.0 32 ............................. GCCATGACCACCCGCGCCGTGCCCGGCGTGTG 66690 29 100.0 32 ............................. AGGTGCCCCTGGCCGTCGATGGGCTGGAAGAG 66751 29 100.0 32 ............................. CACACCCCGGAGCAGAACCCCCTCCCCGCCTC 66812 29 100.0 32 ............................. GCCTCCGTCGCCCGCGTCATCGCGGCCACCCG 66873 29 100.0 32 ............................. TCCTCGACGACGCGCTCGTCGACATCGAGGGC 66934 29 100.0 32 ............................. CTCCAGGTCAAGGTCACCGCACTGGATGTCCA 66995 29 100.0 32 ............................. TTCCCCAAGGTTCACCCCCACGAAACTGGTGT 67056 29 100.0 32 ............................. CCCCGTCGAGTGGCGGGGGTTGAGTGTGGGTT 67117 29 100.0 32 ............................. TTTGCCGATGTCGCGGGTATCGAGATCGCGTC 67178 29 100.0 32 ............................. CATGCGCGACGAACCCTGGACGCGGCGCTTCT 67239 29 100.0 32 ............................. ACTGATGGACAAGTCGGATGCCTCCCTGGCCA 67300 29 100.0 32 ............................. CTGGCCGACGCCCGCGCCCAGGCAGATGACCG 67361 29 96.6 32 ............................T CTCCAAGCAGGGCAAGGACTGGTCTCCGTGGG 67422 29 100.0 32 ............................. GCGTCCGCGTCTGACACGTCGGGGTGCCAGTG 67483 29 100.0 32 ............................. CTGGACAAGATCGCCGGCGTCCTGTCGGCCAT 67544 29 100.0 32 ............................. TGAGATGCAGCGAACCGGCACAGAGTCAACGG 67605 29 100.0 32 ............................. ATGAACTCGATCCCGTGCCCAGGCTTGGCGAT 67666 29 100.0 32 ............................. TGGGACAAGCCGCGACGAATTGAACCCAGGGG 67727 29 100.0 32 ............................. CTCCCGAACACCACGAAGCCCCAGGCTGTGGC 67788 29 100.0 32 ............................. AATCTGACCGGTTTCGCGATGCCCAAGCAGGT 67849 29 100.0 32 ............................. AAGGTCGCGACCAGCGGCAAGGTCCAGGGCGA 67910 29 100.0 32 ............................. TGTGTGGCGAGTTCGGCCTCAGTGATGTAGCG 67971 29 100.0 32 ............................. TGTCGTGCGGCTTTGCGGTCGCTGATGGCACT 68032 29 100.0 32 ............................. GACGCGATCGTCGGGCACGCCAACGCGGCGCC 68093 29 100.0 32 ............................. GAATCCGGCGTCCAGATGCGGAACCAGAAATT 68154 29 100.0 32 ............................. GAAATAGGTTCAAGTCCTGGTCCACCTCAGCC 68215 29 100.0 32 ............................. TGGAAGCGCGCCGACACTGCCGTTCGTGAGGT 68276 29 100.0 32 ............................. AGGGAAACGGTCGACATGCCGTCAGCGTCCTA 68337 29 100.0 32 ............................. GAAGAGTCCGCGTTCTGGATCGACGAACACGG 68398 29 100.0 32 ............................. GCACCGGGCCATGCGACGGCTGCATCGACCAT 68459 29 100.0 32 ............................. GAGGCCGTGCAGGACCTCGTCACGATCGCGAT 68520 29 100.0 32 ............................. GTGGGCGGCGAGACAGTCGGCGATGGAGCGTT 68581 29 100.0 32 ............................. ATGGCGAAGGTCTGGAACCGGCGGCGGTTCCG 68642 29 100.0 32 ............................. CGGTTCCCCGACACGAAGAACCAGAACCCCAC 68703 29 100.0 32 ............................. AAGACGCTGGCCGACGAGGAAGCCTCCCAGCT 68764 29 100.0 32 ............................. TCGACCTCGGGGCCCTGCAGCCTCTCCGGAGC 68825 29 100.0 32 ............................. GTCGCCTGAATCATTGCGCCGCCCAGGAGTGC 68886 29 100.0 32 ............................. GCAAGGACCGCCGGTCCTCCACCCGACTCACC 68947 29 100.0 32 ............................. TCGCCCGGACCCTGGACGGCCTCACCGTCCCC 69008 29 100.0 32 ............................. TTCACGCCCGGAAGCAAGTTCCTCAACAAGGA 69069 29 100.0 32 ............................. GTGTTGCCCTCGTCCCAGAACGGGACAGCGGG 69130 29 100.0 32 ............................. ATCACCAGTGATCGAACCAGTGAGCGAGCTGC 69191 29 100.0 32 ............................. TGCCCCTGCGGGTCGCCGCTGCCCTGTTCCAT 69252 29 100.0 32 ............................. TGGCGGTGCTCGTCGCTCCACGCCAGGACCGC 69313 29 100.0 32 ............................. TTCGCGACGGCTGTGTCTGTGGCCGCGAAGCA 69374 29 89.7 0 ............T.........C...C.. | ========== ====== ====== ====== ============================= ================================ ================== 94 29 99.8 32 GCCTTCCCCGCGCGAGCGGGGGTGAGTCC # Left flank : CGACAACGCGGCCCATGCGGGCTGAGCGGCTCGGGCTGCGGCGACGGCGGCCTGCACGTCAGCGGCGTCACCGGCGGAGACCTCGGCAATGACCTGTTCGGTCGCTGGGTTCAGGACCTCGATGCGTCCGGTCCCGGCGCTGTCGCGCCATGCGCCGTCGACGTAGATCTGGGACCTGTTCTGGACCTCGGACATGGGTTCCCTCCCCTGGTGGATTCTTGGGGTGAACCTAGCGTGACGTGGATCACGCCAACAGGGGTGTGGAGAGATTTTCCGACCTTCGGTCGGACGTGAACCCAGATTCACTTCCGGGGACCGCGGATCAGCGATGGTCGTTCCGTCCTAGGCCTGCTCACTTGACGCTGGGGCGCTGAGAATCGGCTTGAGGGGCCCAGCCGCCGGCAGTTTCACGGCAGGGGGAGACGGACTGGGGGCGAGAGTCTTCAACGGGAAACACTGAGGCTGGGCCAGTCTGCTCGTAAAGTAGCAGGTCAGGTAGG # Right flank : CACGGGCAGTCTCCCGTAGGCCGCACCAAGAAAGAGACCGAAGACGTCGGTGCTGTGGTGCACAGTGGCCGCGTGCTGACGGGGACAGAAGAACTCAATGATCTGGGCGACGCGTCTCGGCGCCCAGATCCGCGACTCCACGGCAAGGATCCAGGCCCGAGGCCAGGCCGTGACGGGTCGTACCCGCTCCTGTGCCACCTGCTCGACACGGCAGTCGTGATGCAGCACCTCTGGGACACCCGGGTGCGGCCTGAGCTTCGGAGCGCCATCAGTCGCGCGGCCGACGTGGATGCGGACCAGATGCGGAAGTTGTTGGCCTACGCTGCGGCGATCCACGACCTGGGCAAACTCAACCCCTACTTCCAATTCCAGGAGCGTCGCGGATCAGGTTTCGACTTCGCAGACGAGCTGGCGAGCGGCGTCCGCCTTCCCAAGACTCCTGGAACCCTGCGCTCGGCGATGGATTCAGACCCGCTGCATCCGCTCAGGCGCCACGAATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCGCGCGAGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //