Array 1 91553-92840 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEF01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0783 NODE_1_length_598141_cov_295.38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91553 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 91613 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 91673 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 91733 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 91793 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 91853 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 91913 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 91973 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 92033 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 92093 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 92153 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 92213 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 92273 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 92333 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 92393 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 92453 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 92513 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 92573 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 92633 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 92693 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 92753 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 92813 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGAGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112436-112268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEF01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0783 NODE_3_length_313092_cov_327.78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112435 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112369 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112303 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 176426-173997 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEF01000004.1 Pasteurella multocida subsp. septica strain CIRMBP-0783 NODE_4_length_191942_cov_256.351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176425 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176365 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176305 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176245 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176185 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176125 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176065 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176005 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 175945 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175885 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175825 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175765 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175705 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175645 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175585 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175525 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175465 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175404 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175344 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175284 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175224 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175164 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175104 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175044 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 174984 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174924 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174864 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174804 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174744 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174684 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174624 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174564 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174504 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174444 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174384 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174324 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174264 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174204 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174144 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174084 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174024 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //