Array 1 21235-23554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIF010000029.1 Clostridium perfringens strain 7 NODE_29_length_32379_cov_90.4548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21235 29 100.0 36 ............................. TTGAATTTAAATACGTTTGTATCTGCATTTTTTCCA 21300 29 100.0 37 ............................. ATAATTTTACAGGACAATACCGAGCGAAACCGTGGAG 21366 29 100.0 36 ............................. TTATAAGGCATTTTAATTTTATATTCATTTAACCCT 21431 29 100.0 36 ............................. AACAATATAGGCGGAAACTTAGAGGATTTAAATTTT 21496 29 100.0 36 ............................. CCAAAGAAGCCTATAACATCTATAACTAAAAAGCAT 21561 29 100.0 37 ............................. GCTGTCATATAATCAACTGTAAATATACCAGCAACTA 21627 29 100.0 37 ............................. TATGGACGCTTTACGTTATGCTATGGAACGCTTAAAG 21693 29 100.0 37 ............................. ATGACTAAGTATAAAGTGGATTTAAAGCTTAGTAGCA 21759 29 100.0 37 ............................. CAGGTAATGGCGGACATGATTTCCGCTAAAATTCCAA 21825 29 100.0 36 ............................. TATAGCTTATTTTAAAATTAGTTTCAAAAAACAATT 21890 29 100.0 37 ............................. AAAGTTGAACCCATTTCTAAATGAAGCTTATATAGTT 21956 29 100.0 37 ............................. CTTAATTTAACTTCTTCACCATTTACAATAAAACTTG 22022 29 100.0 36 ............................. CAAATCCCATATATCCATTCAAGCCTAAAAATTTAT 22087 29 100.0 36 ............................. GTGCATCAAGTCATTTTTAAGAAAAGGCATTATATT 22152 29 100.0 37 ............................. TTTAAACAACAAAAAAAGGCTGTTAGGAAAATGCTCC 22218 29 100.0 36 ............................. TAATCATAGTTTGAACCTGAACGTCTAAGAGCAATA 22283 29 100.0 36 ............................. AAAGAAATAATAGAAAAAGAAACAAAAAAAACTAAA 22348 29 100.0 37 ............................. GTTGCAAGTGGAGTAGGTAATTTAGTATCTGGAGCTG 22414 29 100.0 37 ............................. AGTTTTTGCTTCTAAAACAGAAAACTTCGAGCCTAAT 22480 29 100.0 36 ............................. ATTCATGATAATTAAACAATTATTTAAAGTATTAAA 22545 29 100.0 36 ............................. GGGTAACTATATTACCTTTGTTGCTGCTAAGCTCCA 22610 29 100.0 37 ............................. CTTTCTAAATGTGCAGGATATGAAGGGATAGAGGATC 22676 29 100.0 36 ............................. TTGTTTCTGTTTTTGAGTTTTTTGGTTGATTTAATT 22741 29 100.0 37 ............................. ATTCTTAAATGCTCTGTATATATCGATATTTTTCCAT 22807 29 100.0 37 ............................. AGGTAAAATGCAGGCAATGAAATCAGCGATTGAGGGG 22873 29 100.0 37 ............................. GTAGAGAAGAGAATTGCTATATATATGCTTAAAGAAC 22939 29 100.0 36 ............................. AATAATACAAGGGCGAGTGATGTTGTAAGAAATAAC 23004 29 100.0 36 ............................. AGTAATATAGCTGATTATTTACTGGTTAAAAGAGAT 23069 29 100.0 37 ............................. TTTTTCAGGTATCTAACTAACTCAACAGTATTATCAA 23135 29 100.0 36 ............................. ACTTTTACACTTTTTTAACACTTTTTATCACTTCTC 23200 29 100.0 36 ............................. TTACTTTTACTTTTCTCATCTAAAGCTTTTATATTA 23265 29 100.0 36 ............................. TAACTTCTATAAGTTTTAACTGTTCAAATAAATCAA 23330 29 100.0 37 ............................. TTATATGCCTCATAGTGGAGAATGTGCATATAATTGT 23396 29 100.0 35 ............................. TGTTTCTGTATATTCAGGAAATAGATTAACTGCCT 23460 29 100.0 37 ............................. GTTGTAAAATCAAATTCTCTTTCAAAGATATCTCCTT 23526 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 36 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TTCAAATAAAGTAGTACTTAATAGAGCTTTATTATTTTGTTTTATATGGCTATGTTAAACAAAATGGTTGTTAATGTATTTATTCCTTAAAATAGGTTATAATATAAGTATACTAGTATATACTTAGGAGGAATGGATATGGCTTTGCATAAGAACTTAGAAAAACATATAAAAACTTTAAATTTAAATGAATTAGAAGAATTATTTAATATACTAAGTTCTCTTTTGATTTCTCCGATATATTCATCTGATTTCAATGAAGAAATTAAAGAAGCAAAGTATTTTAAAGGTGAGATTTGTCCTAGATGTTATGAAAATCATATTATCAAATATGGAAAAAGGTATGATAGACAGAGATTTAAGTGTAAAAAATGTGGTAAGGTATTCGATGAAAGAACATCATCCATTATTTCTAGTACAAAATTACCTCTTGATAAGTGGTTTAAATATATAACTTTATTAGTAAATAAAGCAACAATAAGAGAGTGTGCTAGTGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 28089-29486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIF010000029.1 Clostridium perfringens strain 7 NODE_29_length_32379_cov_90.4548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 28089 29 96.6 36 C............................ GCCATATGGAGATGACCAAAGAAATGGTCTAGATCA 28154 29 100.0 35 ............................. TCAACTCTATATTTAATTAAAGTAGAACAAGAACT 28218 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 28283 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 28348 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 28413 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 28478 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 28543 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 28609 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGCATGGTTTTGT 28674 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 28739 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 28804 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 28869 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 28934 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 28998 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 29063 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 29128 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 29194 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 29260 29 96.6 36 ......................G...... GTTGGAACTTCTTTATATCAGCTACTATATCAGTGC 29325 29 100.0 37 ............................. GGGAATTAGGTAAGAAGTTCTCTATATTGTATATTGA 29391 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 29457 29 86.2 0 .................GAA....C.... | C [29484] ========== ====== ====== ====== ============================= ===================================== ================== 22 29 99.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AGTATAGAATGTAGTAAAGAGGATTATGTTAAATACCAGTCATATATAATCTAGAGTGATTCTAGGTATCTATATAAACAATGCATAAATGAAAGAGGATGTCGCATACCAATTGAAAATTGTTCATGTGATAGCCTCTTTTATATTTGATAAGTAATTAGAAATGATTTTATTGTATGTGTTTATTGCAACAATAAAGTAAATAACTACAAATGATGCTAAAGACATTAAAATAGGATAAATAAATACTTCCAAAACCAATTAAGCTAGAGATAAATATACTTGTAAGAATGACTTTGTCTTTGTACGACTACGATGGGGAAAATGTGTATTAAAGAAATAACAAAAATACTTTAAATGAAATGTGTAAATTAAGTTAATGCTATAATATAATAAAGTGAACAATATTAAATTAATACGAACTAATAACAAAAATGACTGGTAATATGCACCAGTCATTTTTATTATTTACATTTAACAACCAAATAGTTTAACATAGC # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4861-8916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOIF010000019.1 Clostridium perfringens strain 7 NODE_19_length_43510_cov_92.6242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4861 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [4863,4873] 4929 36 100.0 29 .................................... TAATAGATTCAGATGATAATGACTACGCT 4994 36 100.0 30 .................................... CTTCTTTTATTAGCTTATTTTTATTTAAAA 5060 36 97.2 30 ......................A............. ACAAATACTAGCCTTATGAATGGACAAATT 5126 36 100.0 30 .................................... AAGAAACATTGCATATTATTAAAAGCAATA 5192 36 100.0 30 .................................... GATATGTTAAAAGCATATGGGCCAAAAATA 5258 36 100.0 30 .................................... CTTAGAATACAACATGTATATAGTTTCCCT 5324 36 100.0 29 .................................... CTAAGACAGAAAGAAAGAATAGCGAGCCT 5389 36 100.0 29 .................................... TTAGTTATGCACATGATGTTGCAGGAGCT 5454 36 100.0 30 .................................... ATTATACCAGGGTTTGAAACTTCTGCTGCT 5520 36 100.0 30 .................................... ACTATGCTTTACAATGAATATGATTTAGCT 5586 36 100.0 30 .................................... CATAGTAGTCGTTAAAATAATAAGAGCTAT 5652 36 100.0 30 .................................... TGTATTTGTGGTTATATGCAGTGCAGAATT 5718 36 100.0 30 .................................... GGTAACATTACAAGTATCTGTATTGGTGAA 5784 36 100.0 30 .................................... TATCGTCCAGAATGTAGTACATGCACTGAT 5850 36 100.0 29 .................................... TTAAGTTTAACCTTAATGGGCAAGAAGTA 5915 36 100.0 30 .................................... ATCTATGACTATAACTGGAGTGATGTTGGA 5981 36 100.0 30 .................................... TCATTAACATTTTTCTGTATTCTATTTCTC 6047 36 100.0 30 .................................... AAATTAGAAAGTGGATTACCGAGCATTCGG 6113 36 100.0 29 .................................... TTAAATATACTTGGATTAATGCAGATGAA 6178 36 100.0 30 .................................... AAAAAGATATATGATAAATCTAAACAGTTA 6244 36 100.0 30 .................................... AAAGATCCTAATGGAAATTTAACTTGTTCT 6310 36 100.0 30 .................................... CACTTTGTACCCACATAATGTATTACTGTA 6376 36 100.0 30 .................................... CATTCAATGGAAGCTTATGTTATTCTTTCT 6442 36 100.0 30 .................................... GATATACAGTTTCGTTCAGACCTTGAAGAG 6508 36 100.0 30 .................................... TTTTTTTGTAGTGAACCGACCAAAGCTTCT 6574 36 100.0 30 .................................... AAAATAAAATAAACAAATCTTTGTAAAATA 6640 36 100.0 30 .................................... AATGGAGCTTTAGGAGTAGCGTGTTGGATT 6706 36 100.0 30 .................................... GCACCAGTTATATCAGCGGCGCTGCCTTTA 6772 36 100.0 30 .................................... CTATACTCTATCCAATCATCAGCCATTAAG 6838 36 100.0 30 .................................... AGGAATTAAAGTCTAAGATAGGAAACTATG 6904 36 100.0 30 .................................... AGTCTGAACTTATAGGAAACTATAAGAGGT 6970 36 100.0 30 .................................... AATTTAAGTATTGGTGAAAGAGTGGCTAAG 7036 36 100.0 30 .................................... GACTTTATAAGTTGTATAGCATTTGGAAAG 7102 36 100.0 30 .................................... TTAAGTGAAGAGAATATAATAGACGCAGAA 7168 36 100.0 30 .................................... ACAAAATCAAATTATAATAAATAATCAAGA 7234 36 100.0 30 .................................... AAGAGGTAGCTTACCTACTAAGTAGGGTAG 7300 36 100.0 30 .................................... AGTTAATGATGAATACCATTTATCATTTTC 7366 36 100.0 30 .................................... CCAGTTGTTCATATTCCTAAAGGAAAGAGT 7432 36 100.0 29 .................................... TAAGGATGATGCTCAAGTTACGGATGTTA 7497 36 100.0 30 .................................... TTTAGGGGTTGTTGTTATTGTTAGTGTTTT 7563 36 100.0 30 .................................... ATACAAAACTTTATAGGCAAGAGTTCAACA 7629 36 100.0 30 .................................... AGGTATCGCGGTACCATTCAATGGTGAGGT 7695 36 100.0 30 .................................... CTATATAAAGAGGTTTAATGCTACAAAAGC 7761 36 100.0 30 .................................... TCATCCATAGCAAGCCTTTTACTTTCTTCT 7827 36 100.0 30 .................................... GGGGGTAAAGTAAGAAATGGTAGCTCTGGA 7893 36 100.0 30 .................................... TATTCTTATAGCGAAGCTAGAGAAAAAGAA 7959 36 100.0 30 .................................... CGAAACGATTAACTATCGTTACAACAATAA 8025 36 100.0 30 .................................... TAAAAAAAATTGAAGGAACATTTAATATAT 8091 36 100.0 30 .................................... GCTTATGCTTATATTGGAGACGCTGAGGAT 8157 36 100.0 30 .................................... GTTGAAAATAAACCTGAAAGCGTTCCAGGT 8223 36 100.0 30 .................................... GATAAAGAATTAACTAATGCATTATGCGGT 8289 36 100.0 30 .................................... TGATGTTTACTTAGCTGCTTATTTTGGCTG 8355 36 100.0 30 .................................... GCAGAGGAGGCTCAAGCTCAAGAGCAGGAA 8421 36 100.0 30 .................................... CAGCCTATTGTTGATAAAGTTGTTACTCTC 8487 36 100.0 30 .................................... TTTTGAAAATGCAAGTATTGTTCATGCACT 8553 36 100.0 30 .................................... TTTTCCTAACTTCTTACAGTATATTCTATA 8619 36 100.0 29 .................................... GATTTATAGTAGCTGTGTACTGAGCTTCT 8684 36 100.0 29 .................................... TTAATAAATATATAATAGATGTTTGACAA 8749 36 100.0 30 .................................... TTAACTTATTGTGATGTAAAAGTGTATTCA 8815 36 100.0 30 .................................... TATGCATTCATAACACTGCGAATGATGCAT 8881 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 62 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //