Array 1 1729-307 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PKQJ01000026.1 Lacticaseibacillus paracasei strain DUP 13076 NODE_26_length_27367_cov_35.1088, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      1728	    36	 100.0	    30	....................................	TGTTTTCTCCAGAACAACAGCTTAGACGGC	
      1662	    36	 100.0	    30	....................................	TGACATTGTGGGTATGCAACAAATCACCCC	
      1596	    36	 100.0	    30	....................................	GAAACTTGACAAAAACAATCTTATCTACTG	
      1530	    36	 100.0	    30	....................................	GAATATCATAATGCGGACGACCCATTACCA	
      1464	    36	 100.0	    30	....................................	AAAAGCCGGTGCAATATGCACCGGCTCACT	
      1398	    36	 100.0	    30	....................................	GCACTGATGAAACCGCACAACAGTTGACCG	
      1332	    36	 100.0	    30	....................................	GATCGCGGCACGATTGTAAACGAAGAAACC	
      1266	    36	 100.0	    30	....................................	CCAAATTGGTTAGCACCGCTTAAAGACGAA	
      1200	    36	 100.0	    30	....................................	TATCAGAGGCTTATCCATTAAACAACTGGC	
      1134	    36	 100.0	    30	....................................	AAACTGCCTTCCGTTGCGATCAACTCGCGC	
      1068	    36	 100.0	    30	....................................	AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG	
      1002	    36	 100.0	    30	....................................	TCGTAGCGGCTAACACGCTTATGGCTGACA	
       936	    36	 100.0	    30	....................................	AAAATATTTCTAGAATTAGCAACTTTATGG	
       870	    36	 100.0	    30	....................................	GATCGTTGAAGAAAGGCTGATCAATATGTT	
       804	    36	 100.0	    30	....................................	CGCAAAAAATGTTTTGACAAGAACACATCG	
       738	    36	 100.0	    30	....................................	GGCCAATATCATCAGTCGGGAGATTGTCGC	
       672	    36	 100.0	    30	....................................	ACTCGTCAATATCCTTCTGCATGATCAAGT	
       606	    36	 100.0	    30	....................................	GCAATCGCGATACTTTCACCGATTGCAACA	
       540	    36	 100.0	    30	....................................	AACAAAATAATAGGAGGTTTTTACCATGGA	
       474	    36	 100.0	    30	....................................	ATGACTTTAACAATCAAATCCCAAGTTGTT	
       408	    36	 100.0	    30	....................................	TATTATCCTAACACATCCATCGAGAAGTTA	
       342	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        22	    36	 100.0	    30	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG
# Right flank :  CTGAATATTCTAATGTTGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATCAATTGCGATTAATAACTTATTTGAACCCTGGAAAGCATTAAGTCAGGCGGCCATTTGGCTCGTAAGTGTTGCAATTTCAACTTGTAAGGGGGTCTGGTAGCCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGCACATATTCAAAAAGGACGGCAGCGGCAGTTTCATAATCTTCAAAGACCGGCACTGGATAAACACAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//