Array 1 1375-2782 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFN01000009.1 Salinivibrio sp. IB574 scaffold9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1375 28 100.0 32 ............................ AACATGAGCCCAACCAATCCGGTGATCAAAGA 1435 28 100.0 32 ............................ ACAAAAGCGGTCACCACGACAGCCAGCAAAAT 1495 28 100.0 32 ............................ ATCGCTTCCGGTCTGCCCGTCCCAATCGTTGT 1555 28 100.0 32 ............................ TTAATATCACGAAGCGCGTTGATGTAGCCGTT 1615 28 100.0 32 ............................ TGAAAGCCGAAGACGCCGCCGCCTTGCAAGCG 1675 28 100.0 32 ............................ CATGTCTTATTAGTTAACTCGGTCATTGCTAG 1735 28 100.0 32 ............................ TCCATCGCTACTCATAAATGACAATCCAAGCT 1795 28 100.0 32 ............................ CTAGGAAATTTGTATGAGAATAGCATTTTTGC 1855 28 100.0 32 ............................ AAACGCCGCACAGGTAATCGTGGGCGTCTTGG 1915 28 100.0 32 ............................ GGAAAACTGGCTCGAATCGAGCGACACGCCAA 1975 28 100.0 32 ............................ GCGCCGTCGCTATCGGCATTCCAGAGGTATTT 2035 28 100.0 32 ............................ ACGAACTGCAGCAACGCGCCGAGGCGAACCCA 2095 28 100.0 32 ............................ TTTGAGCACCAAGGTTTTAGCGCGATTATCCC 2155 28 100.0 32 ............................ TGAGTGATTTCTCGGAACCCCGCGTCCATTCG 2215 28 100.0 32 ............................ AAATTGCCATCAATAAACAGCTCTGGTGATGT 2275 28 100.0 32 ............................ TTTCAGGTCGGTTATGACAGTGCTCTGAGGCC 2335 28 100.0 32 ............................ CAGCTTTTCGCTAAACGGCTGGAGCTGTTCAG 2395 28 100.0 32 ............................ CAAAGAATTGCGCTTCCTCGGCCGGGGCTTCC 2455 28 100.0 32 ............................ TTCTCCATCTCATCAAGCTCTTTCTTGATTTC 2515 28 100.0 32 ............................ AATTCAACAACTGGACGGAGCGGTAGGTAAAA 2575 28 100.0 32 ............................ ATTATCGGCAGTCACTGTGACTATTGCACCAC 2635 28 100.0 32 ............................ TACATCGGAGCCCGAAAGTGTTTCGACTTCGG 2695 28 100.0 32 ............................ AATTTGCGCTCTAGGGAATACACGTTGTCATC 2755 28 92.9 0 .........................GC. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTGTTTTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTAACTTCTTCAGATGCAATCAGCGCCTCTTGCACAAAGCTATAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGTACTCAATTTGCTTGGGCACGGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAACTCATCATCTAACCGTACACTGGTTGGCATGATTCACTACCTCGTTTATAAATCTTCACTGGTTAATATGCAACAAAATGTCGCGCCTTGCAACATGTTTAGAACTGGCACATCTGCGTGACTTAAGAGGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGTGACCCTTCTTTTTTGGCCGCTCAAAAATAAGCAATAAATACAAAGCGTTACGGAAAGCGCCTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : ACGTTATTTGTCGTAGCCGCCGACAAACTCTGACACTCTCGTACATTCTTGCGACAGCCTTTTTGTGACTTGCTGGTTATAGTCAGCCTTCTTTAACGCGTTTTATGCGACACAATGAAGTGGGTGTGGCTGTGATGAATATCAGTAAACAACATCGAATGAGCCTTGTGGAGTGGGCTGAAAGAATTTATCCGAACAGCAAAGGATGGCGTGTAGTGAGTAAAAACTGGCGTTTTTGTGCGTTGGGTTCGGCATTTCCAACCATTATGGAACGCATGATTGAGGTCTTTAACGAGCCCTATTTGGCGCCGGTATTGGCTGACTATCCAGAAGTGATCACTAAACCGCTTAAACCTTACCTCAATGTCTCACTGAGCATGCCTGAGCGGGTTGCAATGCTGCATGACCATTATCGTTTTATGGCGAATACCTTTGGCCGTCATTGCAGCACCATTTTCTCAGTCGCGGGTCTGCCTCTTGTCAGCTTTACTGCCAATAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 140762-141928 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFN01000001.1 Salinivibrio sp. IB574 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 140762 28 100.0 32 ............................ CTGAGCGATACTGTTATCAAGGCTGTTAAAGT 140822 28 100.0 32 ............................ AAGCTCAGCGCCTTTTGCCGTGCTCTTTTCTG 140882 28 100.0 32 ............................ GCCGTCATTGGACTGGCGCCAATACTGGTAAG 140942 28 100.0 32 ............................ ACTGCGACTCGGGCTGTCCGTGGTATTCAGCG 141002 28 100.0 32 ............................ AAAATGCAGGGTGCATCTTGCGATCACCCTTT 141062 28 100.0 32 ............................ GTAGAGCGCTTGCGCATCCCAAAAGCACTCCC 141122 28 100.0 32 ............................ GCACGACGAACGATGCAATGAACGCGACAAGC 141182 28 100.0 32 ............................ ATGATAGCGCCTCTATGTTGTGGCGTTCTAAA 141242 28 100.0 32 ............................ ACTTGCGCCCCATTTAGCTTGTTCAAGTCGAT 141302 28 100.0 32 ............................ TTGCGCAAAGGAAATATGGACAAAGTAATGGA 141362 28 100.0 32 ............................ ACCAGAAGTACCGCCAGTGGTTCCACCGGATG 141422 28 100.0 32 ............................ ATAATCACACCAAGAAAGGCCGGAGGTTGCTA 141482 28 100.0 31 ............................ TGATGGCCGCTATGCGATTTTCTCAAATCCA 141541 28 100.0 32 ............................ ATTTACTAAAATGTCTATGGTAAACGCGGTGT 141601 28 100.0 32 ............................ CTGACGGGGTTAGGTATGTTGTTAGAGCCATG 141661 28 100.0 32 ............................ CTCCTTCATTCTCGGGTCGAAGCTGCAAAACT 141721 28 100.0 32 ............................ CTCCTTCATTCTCGGGTCGAAGCTGCAAAACT 141781 28 100.0 32 ............................ GCCTTGCTCCTCTTGGGTGAGGTCAACGCCGA 141841 28 100.0 32 ............................ GAGATAAATCACTCTCAATCAAATGTGAGTGA 141901 28 96.4 0 ..........................C. | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTGCGATTGGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTACGGCCCACAGACGCTGAACGCAGCGCTTTGTGCTTGGTTTTACGGCCGTTTGTGCGTTCACGCCATACCTTAAAGCTGCGCGGCTTCAACTCACGGCGCATCAGCGCGATAACATCATCTTGTCGCAGGCCATACAGTGTTTCAATGGCTTCAAAAGGGGTCCTGTCTTCCCATGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGCTCGTTCAAAGCCATATCTGTCTCCCTATGCTGGTGGCAAATAATACGGGTAGCGCAGGAAAAACCGATCAGCGTGTTCTTTCTGACCAATCAATGCTTTCACCCTTATTTTTGGGACATTTAAAAATACACCATAAAAACAGTTAGTTACGAAAGGCCCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTATCGAACGATTGTTAGGTTATTCTATT # Right flank : ACTGAAATAGTTGCTTTTTTTATGCCAGTTCATTGTTGGTGGGTCGTGGCATGGAGGAAGTAGGGGGGGATGGTTCAATATCAACAAAAGCGTATGACTAGCAATGACTATACATGTTAATTTGACGCATGTTTGTAGCCAAAGTTAAGCTTGCAATTGCATGCTTTTGCATAGCTAAGCAGGGTTCTAAGGGTTGGATTACTTTTCCCTTTTTCAAGTCGAGAAATATTGCCTTCTTTCGTCCCCATACGTTCTGCAACCTGCTGTTGAGTTAGCCCGGCCTGCTTACGCATACTGAGTAACATCTCGATCAATTCAAACTCAGGCGTCAATTCATCGTATGCTTGTTTCACGTCTGGGTTTTGTAATGCTCTCGCTTTTAATGCCTGTAAGCTATTCATTTTTCACCTCTCTCATACGCCCTGTTGCCAATGCTAAGTCTTTCTTTGGTGTCTTTTGGCTTTTCTTCACAAATGCATGAAGGACATAGATGTTGGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 151492-152524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFN01000001.1 Salinivibrio sp. IB574 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151492 28 100.0 32 ............................ GTCACCGTCGGCGGAGTTCGCGGACGTGCGCG 151552 28 100.0 32 ............................ TACATCAAGATATTGAAATCAATCCAGACTTT 151612 28 100.0 32 ............................ GCGTGTTGGCTTAATCAGTCTTACAGTCATAG 151672 28 100.0 32 ............................ TTTCCCCATCTTTACTTACTCCAAATCAAGGC 151732 28 100.0 32 ............................ TTGCAAACTACTCTCGACATTCGCCCTGGGAC 151792 28 100.0 32 ............................ AATATTGTCTTGGATGTATCCGGTCAGTTGGT 151852 28 100.0 32 ............................ AGTGAGCGCCACTGCACACGCGAGCAGGCTTT 151912 28 100.0 32 ............................ CAGATACTCAATGCCGCTCTGCAAACGCGCAC 151972 28 100.0 32 ............................ AATAGTGCAATCATGGCGCTTATTATCTGATT 152032 28 100.0 32 ............................ TCAAACATAGTTGTTAAAGGGCTTGATAAAGT 152092 28 100.0 16 ............................ ACCCCATGACAAACGT Deletion [152136] 152136 28 100.0 32 ............................ TCACCAATAGGGTACTCTGCTTTGCCGCGGTA 152196 28 100.0 32 ............................ AAACATGTTCTTAGCCACCTCAACCGGCGAGT 152256 28 96.4 32 .............T.............. TGGGACAACCATTATGATTGGCGGCGCAGTCA 152316 28 96.4 32 .............T.............. AGTATGTTGTGCAAATTGCTTGTTTGGTCGAT 152376 28 96.4 32 .............T.............. AAACACTCGAGACATCGAAAAGTTTGCCAGTG 152436 28 96.4 33 .............T.............. TTCTAGCTCATCGGGTGTGCGTAACAGCTTTAA 152497 28 82.1 0 .............T..........ATTG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 31 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTCAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGACCGGCGTGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAGGTAAAGCGTCGTTTGTTGGAAAACATCAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTCACCAGTCTGTCGAGCCAAAAACGAGTAGGGCAGCCAAATACCGAGTTTGCTTTGTATATTGAACGGGAACTGACTAAACAGCCGCCAAGCAACGGCCAACCATTCACCTGTTATGGGCTAAGCCGACGCGAACCCGACCAGCAATCTGCGGTGCCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAACTTTAAATACAGCTAGTTACGGCAGGCCGTTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAACGGCCTGTTGTTACTGACGATTGTTAGGTTATTCTATT # Right flank : GTGTCAATAAGGGTCACCCTTAAATGGTTGACCTATATTCATTTTTTAACCATGCAAACCATGTTAAATTAGTGAGCTGTATGAAAGAGTAGCCATACTTTGCCTAGCTTGTCGCCTGACAAATGGAGTGTTGGAATGCGAAGAAAAACGAAGCGCAAAGACTTTGCAGCGCTTAATGAGAAGTTAGCCTCTCTGAAGCAGAAAGCGCAAAAGAGTGATGACAATCGCTGGGAAAGCTACGAATGCCAGCTTGTCACTCCCATGTATGGCGGCGGTGTGCTCGCTGGAGAAACTGATCAAGCCATGCCTATTCGCGCGAGTGCGATTCGTGGTCATTTGCGCTTTTGGTGGCGTATCGCGTGTGTTCCGGACAACCCTGAAAAACTACGCAGCGCGGAAGAAGCCATTTGGGGTGGTATTGGTGACCATGGAGCAAAGGCGAGCAAGGTGAGTGTTTATGTTGACTGTCCCAAGAATAGGTTGGAGACAATATCAACAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //