Array 1 20-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSZ01000028.1 Streptomyces badius strain JCM 4350 sequence28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 ............................. CCGACCTGGCTGCCGCGCTCGTCGGTCCGCTC 81 29 100.0 32 ............................. CCGGGGCTAGCTGCTGGCTGCGGCCTCTCGTG 142 29 100.0 32 ............................. CCCTCGCCCCCGGCGCCCCTCCCGCGAACGGT 203 29 100.0 32 ............................. CCGAGGCGCTGCTCAAGCTCCAGCCCACCGAG 264 29 100.0 32 ............................. GAGGCCCGCGCCGCCGCGAAGACCGCCAGGTT 325 29 96.6 32 ....................A........ TACCCGGACGTGATCGGGATCGCGGGAACCGC 386 29 96.6 0 .........................C... | G [409] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : ACGATTGCGAGCTGACGTGG # Right flank : GCTGGGTGTGGTCCCTTCGGTCCCTGGTCGGCCGTTCGCCGGGTACGTCGGTCTCCTGACTTCACAAACGCGTCTGCGTCGGACCGACCCCCGACACCGCTGGACGGGGTTGCCGAGTGCAACCCGGACTGGAGTCTGCCCCGGGCCCACAACGCCGCGCGCGGCGGAGACCCATTGCCATGCGGTCAGGCTGCCCCGTCTAGGGCTCTCTGGTAGATCTCGCGAAGCCGACCGCCAACGTCGCACCGGCCAAGTCGGCTGCAGCCAGCGCAGTCCGTGGTGTGGATCAGGTAGTCCCGGTAGGCCACCTCGTGGGCCTGCTCTACAACAGGAGTCAGGCCGCGCTGCTCCCGGCACGGGGCACACGCGTACAGGGCCGCCCCGGGGCCCGAATTCTGCTCGACGATGTCGACCATGACGGCAGTCCCTGACGGGCCTTTGTGCCAGTGGCACCAGCCGAACGGCGCGGGCGCTCCTGTGCTCGATGGTGTGGTCATGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56300-57274 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSZ01000029.1 Streptomyces badius strain JCM 4350 sequence29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 56300 29 75.9 63 .....G.........ATTT.T....A... CTTGGCGTGAGTTGCGGAAAGCAGCGGAATGACGTCGAGGATCGTAAAGCGAGGAAACGTTCG C [56302] 56393 29 86.2 32 CA..........A..........A..... ACCGAGGCGGCGCTGTTTGCGGCGTCGCTGCT 56454 29 100.0 31 ............................. GGGCCGGGCTGGCACCCGACCCTTCATCGTT 56514 29 100.0 32 ............................. CCGTTGGCCCCGTTGCCGATGGCCTGGCAGTC 56575 29 96.6 32 ...T......................... TGCACGGCCATCCGCGCCCCGGCCCGGTAGGC 56636 29 100.0 32 ............................. TCCAGCTGCCCGGCCTGGACCTGACCGTCACA 56697 29 93.1 32 ................G.T.......... TGGGTTGCCAGGACCAACGGCATCATGGCTGG 56758 29 96.6 32 .............A............... GGGACTGCGCCACCGTCGGGGCCGGAGAGTTC 56819 29 96.6 32 .............A............... TCCAGTTCGATGTAGTCGATGTCCCCGAACTC 56880 29 96.6 32 .........C................... GCGGCCCGGGCACCTGCCAGGAGACCGGCTGC 56941 29 100.0 32 ............................. CTGATGTAGCGCTGCTTTGAGACGGTCAGTGA 57002 29 100.0 32 ............................. GTGATGTCGTCCGAGGCGAGCGTGGGCACCTC 57063 29 96.6 32 ...........C................. CGGTGGCAGCCGCGGGAGCTCGGCGACGAGCC 57124 29 100.0 32 ............................. GCAGGGGGCGACCGCAGTACCGTCACCCGCCA 57185 29 100.0 32 ............................. GTCCAGAGCTCGGCCACGGGGCGCGGGTCGGT 57246 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 16 29 96.1 34 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AACTACCGCTGCGTGGCCAGCCCCGTCCGGAAGCCAGGTGCCACCTCTCGGCAAGCCTATAAGCTCCCGCCGGTCGTGGCCTTGAGCGGCAATGCCGCTATTGAATGGTGGGAACGCCAGTCCAACGCTGGCGGGCTGGAGCCATTGCACACCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCAGGGTTCCAAGGACCCTGCTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACAGCGCGAGTACTCGACACCGAACTGCTTCGCGAAAAGATCACTACCGGCATCGGGCGCGGCAAGGCATACGGATGCGGACTTCTCAGCATTGCTCCCACTCGATGAATTCAACAGAGTGCCGACCGAAGCCGTGCCAGGCTCGTGATCGGAGTGTTCCTACACGGCAGCGACTTCTGCGTTTCTTCCATGACTGCCCTTGCGCGGCAGTGACAATAACTCGCCCACCAGAGTAGTGTACGGAAGGTGGC # Right flank : TTTACCGGTTTGGCTCTGAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 598-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSZ01000036.1 Streptomyces badius strain JCM 4350 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 597 29 86.2 32 .C..C.......AA............... GTGACCGCGCCGGACGATCGCCAACTGCCGTG C [591] 535 29 100.0 32 ............................. CTCGACCGCCCGGTCTGCTTCGACATCTCCAG 474 29 100.0 32 ............................. GGGACCGGTCCGACCCGGCGGACAGCCGCGGG 413 29 100.0 33 ............................. GGTGGTGTCGGGAAAGACCGCCAACACCATCAA 351 29 100.0 32 ............................. GACCGAGCGCAGCTACCGCTGGCGGAGCGCCA 290 29 89.7 32 ..AA.......T................. CCTACTCGGATGGTCCAGGCAACAGAGCGGTT 229 29 100.0 29 ............................. ACGGTTGCGCTCAGCGTTGCCGCTCGCCT 171 29 100.0 32 ............................. GCCGTCGACACGGTGAAGGCGGCGCACGGTGG 110 29 100.0 32 ............................. TGGGAGGTCGTCGGCCGACCGCTGATCTTCCC 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCGCTGGAACGCCCGAAACCGTTCCCCGGCCCGATCCGTTGCGTACCCGCGGCGGGTCTCCAGGCGGAACGCCGTGTGCTCGAACTCGGCGAACAGGTGGGTGATCTCCTCAAAGGGGACCAGGGGCACAGCTACTCCTTGGGGGCGAAGCGGGTCAGCAGTTCGCGCGGGATGACGACGAACGTCTCGTGCTCCCCGACGTCCCGCAGCTGCGCCAGGTCCTCGGGGTTGGTGAGCTGGTCGCCCTGGACCACGATGTCACCGGTCTCGACGACCTCGTACAGGGTCGGGCAGTTCCCGTGCTCTGAGGTGGTGCCAATGAACCTGAGCGTCACAACAGGGCTCCGTTCTCACAGGTGAGGCACCAGCATGCAGGCGACGCAGCGACCACGGGGGCCGGTTGCGCAGGATTGCGCGCCGGACCGCCGCCAGGGGGCAGCGAAAGGGCCTACGCTGCCCATCACGAGCTGAATCGACTGGGGCAGCGCCCACTTGGGTA # Right flank : GTTTACCGGTTTGGCTCTGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6012-3609 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSZ01000036.1 Streptomyces badius strain JCM 4350 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6011 29 100.0 32 ............................. CAGATCGCGAACACCCGACAGCGGCTTGTCCG 5950 29 100.0 32 ............................. GCCCACGAGCTGCCCATGCCGTGGGTGGCGCT 5889 29 100.0 32 ............................. CCAGCCCTGCCGCGTAGACAGCTTCCACAGCA 5828 29 96.6 32 ..........T.................. GCCCGCGAGGACGGACGGCAGCCGGACCTGCG 5767 29 100.0 32 ............................. AGGGGCCCCGGTGACAGCCACCCCCGGCCGGG 5706 29 100.0 32 ............................. CAACTCGACCACCGGTTCATGCTCGCCTCGTA 5645 29 100.0 32 ............................. CTCCTCCAACTCAGCCTCCATTGAGGCTCTGA 5584 29 100.0 32 ............................. TGGACCAGATACCGGCCTGCGTTGTCGTGGAT 5523 29 100.0 32 ............................. TGGTACGCCCGCAACGGAGCCAAGCTCGAACC 5462 29 100.0 32 ............................. CGCCCCATCACCTGGATCCGCTACCCGGTATG 5401 29 100.0 32 ............................. TACGGACTGTCGTTCATGCGGGCGGTCAACGA 5340 29 100.0 29 ............................. GCCCTACCCCCTCCTCGGTGTCCGTTTTG 5282 29 100.0 32 ............................. TCCAGCGGGGCCGGAGCGGTCGGCTCGTAGGC 5221 29 89.7 32 ........T........C.........T. GCGCAGCAGGACACGGCGGAGACGCTGCACGG 5160 29 100.0 32 ............................. GTGACCGGGCGCGGTCCTGACGCCGAACCGGG 5099 29 96.6 32 ...........................A. GCCGATGCTGCCCGGGACGCAGCGATCACCTC 5038 29 100.0 32 ............................. CCCTGCCCGCGAGAGCGGGCTGCACCACCCTT 4977 29 100.0 32 ............................. GAACTGGCCGAGGACCTTGCTCTCGAGCGGTC 4916 29 100.0 32 ............................. GCCGAGCGGACGTCAGAAGCGGTCCGGGATTA 4855 29 100.0 32 ............................. TCACGGGCGAGGGTGGACACGTCGGCGGCCCG 4794 29 100.0 31 ............................. CTGTGGCCGCTGGCCTCGCGGACGAGGTGCT 4734 29 100.0 32 ............................. CACCACCGGCCCCCGGTCGACGGCTGCCCGTA 4673 29 100.0 32 ............................. GGTGCGGGTTCATGTGGCGGACGTTCTCCACG 4612 29 100.0 32 ............................. ACGGCCTCCTGGGGCCGTCCGGCGGGCCGGAA 4551 29 100.0 31 ............................. GAGCAGACGGGCGGCCCAAAGCCGGGACCGA 4491 29 96.6 32 ............................T GTCTGGATTCGGAGCTGTTCCAGCAGCTCGTC 4430 29 100.0 32 ............................. TGGCTACGACGTCCGGCCGACCCCAAGTCGAT 4369 29 100.0 32 ............................. CGGATCAACGCGGCGGCGGGGGTGATCCTGGC 4308 29 100.0 32 ............................. CCGATCCGGGCCAAAAACCGCCCGGCGGCGTA 4247 29 96.6 32 ...A......................... CCGACGAACTCCGGGCACTGAGGCTCGGGGGC 4186 29 100.0 32 ............................. GAACTCGGCTGGCTGGAGCTGCGAAAGCTCGG 4125 29 100.0 32 ............................. GCCGGCAGAGACACGTAGGTGCATCGAGTGTG 4064 29 100.0 32 ............................. TCTCCGGTGGGCTCTTCGACGGTGATCGTGAT 4003 29 100.0 32 ............................. CCGTTCGCCTTGGCCCACGGGAACGAGTTCGC 3942 29 100.0 32 ............................. TACGGTCCCGTGCTCAGGTAGCCGGTAGCTCG 3881 29 100.0 32 ............................. GCCGGCGGATGGCTGGCCGACGCGTGGGACTG 3820 29 96.6 32 ............................A GCCGACTACCCGAGCACGCTCACCGCCACGGC 3759 29 100.0 32 ............................. TTGCGGGTTGACGCTGACCGGACGGAGGGGGC 3698 29 96.6 32 ...............A............. AGCTGGGTGGCGGGCCGACTAGTCGGCCGCCC 3637 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.2 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : ACGATTGCGAGCTGACGT # Right flank : GAGAAGCTGGTCGCCGGGGCTCCCCACGGGTTGTGGGCCGCTGTGCCGTACACAGCGGCCCAGGGCGTTGGTTCGGCAGATAGCACACGCCGTCGACCGCGGGGCCTCACGGCCTGGGTGAACAGGGGGACGTGAAACTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTTCGCGAGCGGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCACGCTTCGCCAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCTGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTACACCTCGCACTCCTGGAGGACACCGTCATCCCGTACCTGGGAGCAGGTAGGGCAGCCGACCGGACTGCTGAGTACCAGTTGCGGCTCCTCGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //