Array 1 784858-783182 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022847.1 Nitrosophilus alvini strain EPR55-1 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 784857 30 100.0 34 .............................. TTGACATGATGACCGGACAGCTTAAAACGCTCGG 784793 30 100.0 37 .............................. TAAACAATCTGTCCGTTTTCGATAGATACTTCCTCCA 784726 30 100.0 36 .............................. GAGTAAAATTTATTAGTAATACAGGCTGGGCTTTGC 784660 30 100.0 36 .............................. TACTCCAATAGTGCTTTTTCAAGCGTTCCTATGCCT 784594 30 100.0 35 .............................. TAAATCCCAGCTCCATTTATGTCGATTAACATCTG 784529 30 100.0 35 .............................. AGCCGTAGTCGAGAGGTTGTTTGAAATAAAAAAGT 784464 30 100.0 36 .............................. GGAAATAGCGGCTCTAATAAGCGAAAAGTTTGACTA 784398 30 100.0 35 .............................. GCTTGCGTGTACCTCGTACCCTGCAAGGTCTGGCT 784333 30 100.0 36 .............................. AATATTGAAACATCTCCGAATTTAAAGAGTCCTCTA 784267 30 100.0 37 .............................. ATAATTTCTCCTGTTTTTCTTGTAACTATATCCTCAA 784200 30 100.0 35 .............................. TGACATCAGTCGCACGTGCTATTTCCGACTATTTC 784135 30 100.0 35 .............................. TGATATTTGACGATAAAAAATTTGCCGATACTGTT 784070 30 100.0 37 .............................. TATTGCCTCCTCTACTTTTTCTGCTATACTTTTATGT 784003 30 100.0 35 .............................. GACGGAAAGTTTAAATTTGTGCCTTTGCAATATGA 783938 30 100.0 37 .............................. TCGATCTTTAGAAATTCGAAACGATTTAGTTTTTCAA 783871 30 100.0 38 .............................. TCAAAAGCGTTTACAACCAGTTCGAGTTTATATTGCAT 783803 30 100.0 37 .............................. TATTCAAGCATAATATATTCTCTATCCTCTCTTTTAA 783736 30 100.0 36 .............................. TACTTAAAACCTTTGTCGTGTATTAAGCCTATTATT 783670 30 100.0 36 .............................. GAAATATATAGAATGCGTTTATAAAGGAACATTATG 783604 30 100.0 35 .............................. TCAAATTCAAATACCTTTCACATGACGATATAAAA 783539 30 100.0 35 .............................. CAAAGGACAAAAGAGGCACTCAAAGCGCGAAAGGC 783474 30 100.0 36 .............................. GATAAAGAGATAGCAAAATGCGAAGCGGACATAAAA 783408 30 100.0 35 .............................. TGAAACTGCTTCCAGCTGGTTTTGACTCCTCCAGC 783343 30 100.0 36 .............................. GGAATTTCTTTCAATGCAATATGAAAACGACGGTCA 783277 30 100.0 37 .............................. GTACGGTTTGCAATATTGCGGTTGAGAGCGATATGTA 783210 29 90.0 0 .......................A.-.C.. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.6 36 ATTCAACCGATACATATGATGTATTGAAAT # Left flank : TTTCTCTAAAAGAAAAATCATGAAAAACTACAAATATAATTATATTTTCTTGATGTATGATATAGCTGATGAAGAAAGTGAGGCCGGCAAATACAGAGTAGCAAAAGTCTTTAAAATATGCAAAAAGTATCTGAAACATCATCAAAAAAGTGTTTTTAGAGGTACTATAACCCCTTCAAAGCTATTAAAGCTTTCCAATGAATTAAAACAAGTTATAGATGAAAAACTTGATTTTATTTCTATCATAAAACTTCTAAATGCTGCTGCTTTTGAAGAAGAAAAAATCGGGACTCAACAAAAAGATGGAGAATCTTTTTTTATATGATTTTTCCATCCTCTTTTTATTGCAAATAGTTCAAAGTAATGATAAAATGGTATTTACACGCTCTTTGACATTTTATTGTTAAAAAAGATGAAAAAGATTGGAAAAATAAATGTATATTCCCTAAAAATTGGTTTTTCAATAAATTTTTATATACCGATCATCCCATAATATCTTT # Right flank : TTAAATGGGCTTTTCGAAAATAGCAATAATTCATTTTAGAATTTAAAACAATATTCCATAAGCTTTAGTATATCCCTATAGTTTGAATATGGTTTGAAACTAAAATAGAATAAAAACATTCTAAATAAAATCATCCATACACAAAACTTTACTAGCTTTTTCCTGGCAGTTTTTGCAAAAATGATAGCTTTTCCTGTCTGTATCGGCAATAGAGTTGGAAAAATGCATAACACATTTTACATCCGGGCAGTGGGGAAGTCCAAGGATATGGCCGATTTCATGTACAGCTTCAGTAAGAACTCTTTTAAAATAGAGTTCTTCATTATTCTCTAGACCATAAAAAGTATTTGAAAGACGTTTCAAAGATATGATCCCTACTCCTATCTCATATGAAGCTAATCCAAATACAAAATTGAGACCCGGTTCATACAAATCTACATCAACGATACCCAAAACCATATCACTATCAAAAGTTTTTTTCAGTACCAGAATCTCGAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACCGATACATATGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //