Array 1 1096544-1102035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014234.1 Moraxella osloensis strain CCUG 350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1096544 28 100.0 32 ............................ GTGTACCGTCTTGATTACTCTGACGGCGAATA 1096604 28 100.0 32 ............................ GTTAGCAAAAGTTTGAGTGATAATCCCGTCTA 1096664 28 100.0 32 ............................ ATTTTCGTCAGGCTTTATGCGTCTAACGTCTA 1096724 28 100.0 32 ............................ TAAATAATCGGTTTTATAGTTACCTTCAACAG 1096784 28 100.0 32 ............................ ACGAATTACAGCTATACAATGCGTTTTGTCAT 1096844 28 100.0 32 ............................ TGATATCGAAGGTACGCCAGTTCCCACGGATA 1096904 28 100.0 32 ............................ AGTATCATCAGCGACCCAAGCTATGAAGATGA 1096964 28 100.0 32 ............................ TTAAGAGATTAAAAAGCATAAAAATAAAAGCA 1097024 28 100.0 32 ............................ TAGGATTTTTGGTATTACCCCTAAACGTGATT 1097084 28 100.0 32 ............................ TGCAAAAACAGCGCGAGGTCTTATATACCAAC 1097144 28 100.0 32 ............................ ACTTGTGTTGTCGACCGCAAAAATCATGCTGT 1097204 28 100.0 32 ............................ TGTAGCGGTTTAAATCGGCTGTTAGCTTGATA 1097264 28 100.0 32 ............................ TGCATATTTTGTCGCATCGCCAACGGCTGTTA 1097324 28 100.0 32 ............................ ATCGCTTAGACTGCAAGCCAAGTAGTTCGAAG 1097384 28 100.0 32 ............................ TAAAACAGTGATTGCGCCCAATACTGCGCCAG 1097444 28 100.0 32 ............................ ATTGACAGCGTTATACTCCAATGCCGTGCTAA 1097504 28 100.0 32 ............................ CTTTTAATTTGCGGTTAAGGTCATGAGTGACT 1097564 28 100.0 32 ............................ TAAGCTAACTACACACAGGAGCGTTATCATGC 1097624 28 100.0 32 ............................ TGTTTCTGCAATCTCTTTAGAATTAGCCTGTT 1097684 28 100.0 32 ............................ TCAAGTGTGCTGGCGTCACCACTTTTTCTGTC 1097744 28 100.0 32 ............................ ACAGGTACAGCTTACCGCTTTGTATCCGATAT 1097804 28 100.0 33 ............................ ACGCTAGGTGTTTGCTCACTGGTAAGCTGTCCA 1097865 28 100.0 32 ............................ TTTTTTGTTGTCTGAAATTTAAGGATTGAACA 1097925 28 100.0 32 ............................ AGTCTTTACCCCAGTTAAAGCGTAGCGGTGCA 1097985 28 100.0 32 ............................ GCCATCACAGGCGGTTTTTTTATGGGCTAAAA 1098045 28 100.0 32 ............................ TGCATTTCAATGAGCCTATAATCATAGTCTAG 1098105 28 100.0 32 ............................ CATCAATATTCACCGATACTCATCAATACTCA 1098165 28 96.4 32 C........................... ACGAAGCGAATACCACGGCTTGTTTATCGAAA 1098225 28 96.4 33 C........................... TTGTGCGCTTTGTCTTTGCTAAACTCCCAAACT 1098286 28 96.4 32 C........................... CAATCGGGTGCGCCTTTGAATACGTCTTGTGT 1098346 28 96.4 32 C........................... GTAGTGGCTGGGTTCGTGATAAGCACAGTCCG 1098406 28 96.4 32 C........................... GATACGAGTCGTTGGCAGTAAGTCATAAGTAA 1098466 28 96.4 32 C........................... ACGTTTGGGGCTGGACTTATCGAGAGATATCA 1098526 28 96.4 32 C........................... GAAAAGGTCATGATTGACGCAGGTGGTTGGCG 1098586 28 96.4 32 C........................... ATCATGCACCTGCGCTATGCTAGACAGTCTTT 1098646 28 96.4 32 C........................... AAAGGCTTGGTGAGTGGTTTAATTCATCACAC 1098706 28 96.4 32 C........................... AGCATGACGAGACCAGATGCCACATTCCTTGA 1098766 28 96.4 32 C........................... ATCAAGTTTTATTGAAGCTGCTTGTAACTGAC 1098826 28 96.4 32 C........................... ACAGTCAAACCGCGTTGAGCATAAACATTTTG 1098886 28 96.4 32 C........................... TTTTTCGCCTTGCTCATAGATAAATGTTTTTT 1098946 28 96.4 33 C........................... AGGCATAAAAAACCCTGTTAGCGTGAACTAACA 1099007 28 96.4 32 C........................... ATGCGCCCACTTAATGCTTTATTCTCATCCGC 1099067 28 96.4 32 C........................... ATAAAAGGGCTGTCACCTTTGCCTGTACCACT 1099127 28 96.4 32 C........................... AAATCGGGGGAAGGCATGAATACTGGCTTTCA 1099187 28 96.4 32 C........................... GTTTCGGGAGAAAACAAATCTTCCCGATAATA 1099247 28 96.4 32 C........................... ACAATGAAGTATGTTATTCGTGTGCTTGAGCG 1099307 28 96.4 32 C........................... ATCAGGCTTTACAATCACAATAATTTCCAGCT 1099367 28 96.4 32 C........................... TTCCCCCGATTTGGGGACACGAATAAAATCTA 1099427 28 96.4 32 C........................... TATAACAAATAGCTGCCTAATAAGTTTTGTAA 1099487 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 1099547 28 100.0 32 ............................ ATTTGCGTTGCAGGGTCTTGGATAATTGACAA 1099607 28 100.0 32 ............................ GACAAAGTTATGACGCTGACAGTATGGCAGAG 1099667 28 100.0 32 ............................ TATAACAAATAGCTGCCTAATAAGTTTTGTAA 1099727 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 1099787 28 100.0 32 ............................ AAAGGCTGGTCGATGAATGGTACGCGCTGCCA 1099847 28 100.0 32 ............................ AAGATACCGCAGACAGTCTAAACGCACTTATA 1099907 28 100.0 32 ............................ AGTCTGCTCAACCTTACTATCAACCTTCTGCT 1099967 28 100.0 32 ............................ AAGCATCGCATTTTATGTTGTCGTGAAGTGCA 1100027 28 100.0 32 ............................ AATATCACCGTCCCACTGTGCGCCTGATACAA 1100087 28 100.0 32 ............................ ACTTTAGTTGTGGTGCAGCATCCGCAGTTGCC 1100147 28 100.0 32 ............................ ATTGCGCTTGATAGTTTTAATACCTACAACTT 1100207 28 100.0 32 ............................ ACCGTCAAAAAACAGCAAAGGTGAGCTACCTA 1100267 28 100.0 32 ............................ AAAGCGTAAACCAAAACGCTCGATACTTGCGG 1100327 28 100.0 32 ............................ TTAGCGAGTTTCTCATAATGCACAGTATCGAA 1100387 28 100.0 32 ............................ GCATTAAACACCGCGCAGAACGTGGTGCAAAA 1100447 28 100.0 32 ............................ TAGCACTTTGTTTGTGCAGACAGTGGACGGCA 1100507 28 100.0 32 ............................ GCCAAGTCTAAATGCTTGTAGTGCCAATTCTT 1100567 28 100.0 32 ............................ AGTCATTGATGAATTGTCGAAATCCGACACCG 1100627 28 100.0 32 ............................ TGTACCTGTGCCGCCAATAAAAATCACGTTTG 1100687 28 100.0 32 ............................ AACAAATATCCACGCCTTCAAACGATTTGATA 1100747 28 100.0 32 ............................ CTTAAATTCGCAAACAGCAAGAGGAGCCCAAC 1100807 28 100.0 32 ............................ TAGTTTTTGAGGCTAGGCTATCATTGCAAAAT 1100867 28 100.0 32 ............................ TAGACTGTGGGGTTTTTCTTGCGCTTTGAGTT 1100927 28 100.0 32 ............................ TATAGTGACGCTACCATCCGCATTAACTATAT 1100987 28 100.0 32 ............................ TTCAACATCATCGTCATCTATATTAAATAACT 1101047 28 100.0 32 ............................ ACGCCTATTGCAAAGTTGTCGTACTCGGTCAC 1101107 28 100.0 32 ............................ TAAAAACTCCTCAATCTGCTCAATCTGCATAT 1101167 28 96.4 32 .............C.............. ATTATCTGTAGTGCTAGAGTGGTCTTACCTAA 1101227 28 96.4 32 .............C.............. TAAGCGTTGGGATGGTAACGCATGGGTTGAAG 1101287 28 96.4 32 .............C.............. TTGCCCCAGCGCATGTGTCGTTTGCCGAAATG 1101347 28 100.0 32 ............................ GTTGGGTGAATGATGGATATAATCTGATAGCG 1101407 28 100.0 32 ............................ GCTCGCTATCTCGCAAATAACTGGCATTGCTT 1101467 28 100.0 32 ............................ GACAGCAAAAACAGCCAAGGCAGTCACTTTAG 1101527 28 100.0 32 ............................ GAGATTGAATTATCCAAAGCCGTAGAGCCACA 1101587 28 100.0 32 ............................ ACCACGCAAAACACCGATGCTCACTGAGCCTT 1101647 28 100.0 32 ............................ TTAACGCGCTCGGTCTTGCGATACCACAACTC 1101707 28 100.0 33 ............................ TCATGGCTTGTTCAAGGTTCTATATCAATCTAT 1101768 28 96.4 32 .............C.............. TTTTGATGAACCCAATGAGGACGGTAAAGTTA 1101828 28 96.4 32 .............C.............. TTATAAAAATGGTTGAGATTGATACCGATTTT 1101888 28 96.4 32 .............C.............. TATATGCAATATATCGTAAAATTTTAAACTCA 1101948 28 96.4 32 .............C.............. TTACGAGTCTTTGCCAACCTCATTTACTGGCA 1102008 28 75.0 0 C.........G........A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 92 28 98.6 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAGGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAACTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAGAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCG # Right flank : TTAATTAGTAAAACCGTAAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACACTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAAGTCGCTAGACCAATCTACCCTATTTGATATTAATGTACTTTAATACTCAAAGCTTTGATACGAGTGGGTTTAACTAAGCTTACAAGAATAACATTAATGTGATTTAATGACAATTAAGAAAATTATCTTGCAGTTTGGTCACGCAATATTGCGTGTTTTTAACCCCCACTCTTCTGATGTTTTTGATGGATAAAGCTCAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1124084-1134680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014234.1 Moraxella osloensis strain CCUG 350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1124084 28 100.0 32 ............................ GCCTTCTGACGTAGTTTGTTGGTTTTGACAGA 1124144 28 100.0 32 ............................ TGCTGCTGGTGCTGGCTATGCAATTGCTGGCT 1124204 28 100.0 32 ............................ GATGAGCTCAAGGCGATTTTGACAGAACGTAA 1124264 28 100.0 32 ............................ ACTGTCCTGTTTCGACATCGGCAACATAAAAA 1124324 28 100.0 32 ............................ ATGCAAAAACAGTTTACAAAGCAACTGGGCAA 1124384 28 100.0 32 ............................ AACTGCTCAAGCTGCTGGGTGGTCGTTTGGTG 1124444 28 100.0 32 ............................ GTAAGAAATAGCCCCACGATTACCCCAAGACG 1124504 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 1124564 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 1124624 28 100.0 32 ............................ GCCCACGTTATCGACTTTATCACCAACGCCAA 1124684 28 100.0 33 ............................ ACTTGGTCGCCAGTGGCTACAGTTTTATTGTCA 1124745 28 100.0 32 ............................ TTGATATGTCATTGGGTGAGTGCAAACAATAT 1124805 28 100.0 32 ............................ AATTTATACAGGTGAAGAAAATGACTAATAAT 1124865 28 100.0 32 ............................ TTTATCACCCCTTTATCATAACTGAAATAGAA 1124925 28 100.0 32 ............................ ACAGCGACAACGACGACGACGACGCAGGAGGA 1124985 28 100.0 32 ............................ TCGATTGGTTAACCTTTACCGTTCATGACACT 1125045 28 100.0 32 ............................ TTGCTCTGTAACCAACGTATTACTGCTTGACT 1125105 28 100.0 32 ............................ GTCAAAGATGACGCTTCTATCAAATTGCAAGC 1125165 28 100.0 32 ............................ AACAAACCCACAAATAGATACATCATCAATCA 1125225 28 100.0 32 ............................ TTATTTCTATCCAAATTAATTTTATTTGATTT 1125285 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCACGTCCAGATTAA 1125345 28 100.0 32 ............................ GCTTGAATTCGGACGAAGCCTTGTTGCGGCTC 1125405 28 100.0 32 ............................ GCTTGATATCACGTTAAAACGAGTTGTAGTGA 1125465 28 100.0 32 ............................ CGCCTGTTGGCTCTATCTTTATGTATGATGAA 1125525 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 1125585 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 1125645 28 100.0 33 ............................ GCTCAAGATTAAACTCTTGATAGGTTTTTTTGC 1125706 28 100.0 32 ............................ ACCCACAGCATCGACTTTATCTCCAACGCCAA 1125766 28 100.0 32 ............................ AAACAAGACCAGATACAATATAACCAGCAATG 1125826 28 100.0 32 ............................ TTGCCATGTCCGTTAGCGGCAGTAACTAAAAT 1125886 28 100.0 32 ............................ ATTTTTATCATGGGATAATGGGGAATTATCAA 1125946 28 100.0 32 ............................ GCTTTGCTACTGACATCTATCCATACCTGAGT 1126006 28 100.0 32 ............................ AGTAATAGGTTTTGTTCATGCCTTGTCATGGC 1126066 28 100.0 32 ............................ ATTAACAGATTAACGCCTATCATTGCCATATT 1126126 28 100.0 32 ............................ TAACCAAAAATGGCTATCCCTCGAATCTGTGG 1126186 28 100.0 32 ............................ CTACATTATCTAAAACGACTTGATTAGTTTGG 1126246 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 1126306 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 1126366 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 1126426 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 1126486 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 1126546 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 1126606 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 1126667 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 1126727 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 1126787 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 1126847 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 1126907 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 1126967 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 1127027 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 1127087 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 1127147 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 1127207 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 1127267 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 1127327 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 1127387 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 1127447 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 1127508 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 1127568 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 1127628 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 1127688 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 1127748 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 1127808 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 1127868 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 1127928 28 100.0 32 ............................ GCTATTAGCCAAAATACTAATGTGCATATCAA 1127988 28 100.0 32 ............................ CTAACGTGACATTGTAGGTATAGCCATTAACA 1128048 28 100.0 32 ............................ ATCATGACCGCATCAGCCATATTTGGTGATGA 1128108 28 100.0 32 ............................ CATACCGCTAACTAGCGATGTAAGGCTGTCAG 1128168 28 100.0 32 ............................ GCAAGTACAGCCGAAACCAGCAGCAGCAGAAC 1128228 28 100.0 32 ............................ TATCGGCAGTGGGGCGGGCTTGACACAGTTAC 1128288 28 100.0 32 ............................ CCGAGCGGTCTAACTTGCTCAAGCGTGGTAAT 1128348 28 100.0 32 ............................ TAGACTCAGCAGAAAACCCACTGCAAAACATG 1128408 28 100.0 32 ............................ ATTCAAAATCACATAAGGAAAGGTAAGTGCGA 1128468 28 100.0 32 ............................ GCTAACAGATGGCAGCGATGTTTTGAACTTCT 1128528 28 100.0 32 ............................ GTCAGCATCAATAACTGCGCTTTCGTAATTAC 1128588 28 100.0 32 ............................ ATAATTGATAGCAGACACGAGCCGTTCAGTAT 1128648 28 100.0 32 ............................ CATAGCAGATACCGCAGACGCAGGCACTACAG 1128708 28 100.0 32 ............................ TTGCCCGCCCATCACTGGCGCGTGCATATTGA 1128768 28 100.0 32 ............................ TTTACTGATTAATACGCTAGAGAAATGCTTTA 1128828 28 100.0 32 ............................ GAAGAAGATTTAATGAAATCTTGGGTTAACTG 1128888 28 100.0 32 ............................ TTGCAGGACTTACCGTGGCGTTATTAGCCCAA 1128948 28 100.0 32 ............................ GAATTGGTCAAGCGTGATGGGTAGCGGCGGCA 1129008 28 100.0 32 ............................ GCCAACGTCTTTTACGGCATCTTGTACGCCCA 1129068 28 100.0 32 ............................ CTTTTTTTGGTCATGTTGTGCGCCCACTTCGA 1129128 28 100.0 32 ............................ AGTCACGATGAGCGTGTACGCCATGAACATAA 1129188 28 100.0 32 ............................ AAGACAGGTTTAATGCCACTACTAACGCCACA 1129248 28 100.0 32 ............................ AGTCCATTGCCTGATAGATCATTAAAGTAATA 1129308 28 100.0 32 ............................ CGACAACGCCAAAGCGCACGATGTCGGGCGTT 1129368 28 100.0 32 ............................ ATGGTAATGACGCAGATTTCGAGGAGTTGAAA 1129428 28 100.0 32 ............................ GTGCAAAATTTACAGGTCATTAAAGAGCTTGC 1129488 28 100.0 32 ............................ TTCTCGAACAATAGCCACATGGTCAGCAACCA 1129548 28 100.0 32 ............................ TGTACCGCGGCAGACTCGGTTAAGTTAAACGC 1129608 28 100.0 32 ............................ CTGTCTCATCTTTTAGCTTGCCTGCGCCGTCA 1129668 28 100.0 32 ............................ AATAACCATGAAAACCTTGGCAAGTTTCCATG 1129728 28 100.0 32 ............................ TATTAGGTAAAATCACCATATAGGTATAAATT 1129788 28 100.0 32 ............................ CCCACGTATTAAAGCGGATAACGTCTTGCACT 1129848 28 100.0 32 ............................ CCACAAGCATAATAGACGCAATCGGGCGGCTT 1129908 28 100.0 32 ............................ AATCAAGGGAAGTTAAAGCAATGCCAGTTATT 1129968 28 100.0 32 ............................ GTGATGGTAATGACGCAGATTTCGAGGAGTTG 1130028 28 100.0 32 ............................ GCCTGACAAATCCATAAACTCAGTAAACTTCT 1130088 28 100.0 32 ............................ AGCATGACGATGCTTTTCAAGACTTTTAACCC 1130148 28 100.0 32 ............................ AATCTATAAAATCACAAACCTTTGAAGCCCAG 1130208 28 100.0 32 ............................ CCGAACATCAGCACCAACGCCAGTTACTTTAT 1130268 28 100.0 32 ............................ GCAAAATCTCACGAACAGCCCATTGACCCTTA 1130328 28 100.0 32 ............................ AACAAGTGCTGATATGCTTGCTATTACTGGCT 1130388 28 100.0 32 ............................ AAACAACTTGACTAGTTTGAAGTAAGCTAACA 1130448 28 100.0 32 ............................ ATTGCGTTACAACTCGTCAAGACCGCGCACCC 1130508 28 100.0 32 ............................ CAGTTGATATCTGGGCGTAATTCTTCTGCGGT 1130568 28 100.0 32 ............................ GCCAACGTCTTTTACAGCTTCACCAACCCCGA 1130628 28 100.0 32 ............................ AGAAGAAGAACCTATGAAACCAGTTAAAAATG 1130688 28 100.0 32 ............................ AACAACTGCATCGCCAACTTTATCAACACTAT 1130748 28 100.0 32 ............................ TAAAGCGCATTTGCAGAATCTTGTTCAAGACA 1130808 28 100.0 32 ............................ TATACCAGGGCTGAAAATGCTTTTTCGTTTTA 1130868 28 100.0 32 ............................ ACTCAAAACCGCCATCAGAATCTGGTGGAAAA 1130928 28 100.0 32 ............................ ATCAACGGTGCCGAAAACTTTGCCACCACCAT 1130988 28 100.0 32 ............................ ATCTAGCCAACTTTACCCCATGTCAATTAAAT 1131048 28 100.0 32 ............................ AGTCTTGAATTTCTTGAGAACGCTCTAAACGG 1131108 28 100.0 32 ............................ TTGTACCAACAGTGGCTAATGTGGATTAACTA 1131168 28 100.0 32 ............................ ATCATACAACTAAGCGTCCTTGCTTCCTGTGG 1131228 28 100.0 32 ............................ CAAATCCAAAAAGTTTGAAACCACTTGTTATT 1131288 28 100.0 32 ............................ CCCCTGTTCCTGCTGTCCCTAACGATGGGGCG 1131348 28 100.0 32 ............................ TTAAACGTGGCTTTAATAACGCCAATTTATCA 1131408 28 100.0 32 ............................ GATGTCCCCGCTTTGTGATTTTTTATCTACGT 1131468 28 100.0 32 ............................ TCATAAGCAGTAGGTAAGATTTTTCGAGTATT 1131528 28 100.0 32 ............................ TGTTTTAGATTATCTCGCTAATGTGCAAGCTG 1131588 28 100.0 32 ............................ AATAGCATCAATTATATCAGTAGGGTCAAACG 1131648 28 100.0 32 ............................ AGCGATTGCACCGCCCACGATACCTTTTGCGA 1131708 28 100.0 32 ............................ AGTCGCTCCGTTTTTGTTCGCTACAATGAGAA 1131768 28 100.0 32 ............................ TTGATGAAAAGACGCTCGCTCTGGTCGAACGC 1131828 28 100.0 32 ............................ CAAACCAGTTAACACAACAGTTAGAGCCGCAG 1131888 28 100.0 32 ............................ TAGCATTTTTGCTAGTTCTTTTTGGTCGCCTG 1131948 28 100.0 32 ............................ ACTAATCATGATTAATACAGTGCCATTTTGAC 1132008 28 100.0 32 ............................ AAATGCGCTATCCCTGCCATATCACCGAGAAA 1132068 28 100.0 32 ............................ CATTCAAAGATGGTAAGCCAAAAGTATTTTAT 1132128 28 100.0 32 ............................ TGCGCCAGACGATTGGCACGACTTACCAAATA 1132188 28 100.0 32 ............................ GCAAAGATTGACATTCGGATTTTCGCTAAGTT 1132248 28 100.0 32 ............................ AACAGGCGCAGTATTTGAACGATTGAATTTCA 1132308 28 100.0 32 ............................ TATCAATCGCTGAATTTTGCCAGTCTGTAGTG 1132368 28 100.0 32 ............................ AAAATCGACGATAGCAAACACACGCTTGCGTC 1132428 28 100.0 32 ............................ TAAAATGGGGCAAAAATACGCAAATACGATGG 1132488 28 100.0 32 ............................ TTTAGCCGCCTTGTAGCGCGTTAAAATCGCAT 1132548 28 100.0 32 ............................ TAAAATCATTGACATGGCTATATCAATGCCAG 1132608 28 100.0 32 ............................ AAGTTGGCGCAACGGTACACACGGCAAACCAT 1132668 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 1132728 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 1132788 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 1132849 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 1132909 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 1132969 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 1133030 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 1133090 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 1133150 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 1133210 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 1133270 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 1133330 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 1133390 28 100.0 32 ............................ AACCTTGGATGAAATGCGCTCAATCTTGTTTC 1133450 28 100.0 32 ............................ ACCAAATAGCGCTCAGCGATATCTGGGTAATC 1133510 28 100.0 33 ............................ CTGCCCCGCCACCTCAAGCGGATTTACACGATG 1133571 28 100.0 32 ............................ ACAAACGATCCGTAATGCTAAAAAATATGTGT 1133631 28 100.0 32 ............................ ATTATTATCTGATGGTGAAAAAGGCTGTTGAA 1133691 28 100.0 32 ............................ ACCAGCACGGAAGCGGTCAGTTTCCTTAACAT 1133751 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 1133811 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 1133871 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 1133932 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 1133992 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 1134052 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 1134113 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 1134173 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 1134233 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 1134293 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 1134353 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 1134413 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 1134473 28 100.0 32 ............................ GACAACCTTGCCGCCAACGTCTTTTACCGCAT 1134533 28 100.0 32 ............................ GCCAACGTCTTTTACAGCATCACCGACCCCGA 1134593 28 100.0 32 ............................ TGTCGACATTCAAACGCCAGAACTACCGCAAA 1134653 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 177 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGATGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTAACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : ACATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTAGTATGTGGATTTAGAGTCGTACCGTGAAAACTCAAAACTTTATATAGTCCGTATAACAACTTTTGTATCTATTTTTCCAATCTCAAGACGGTTAACTAAACTAGTGTGTCAATGTCTTAAAGTTTCTAATAGCCATGTTTTTAATTTGGAGGGAATAACTTTGAAAGGATTTTTTTTAGGGCATGAAGGTTTTTTAAAATGAGTGATTAAAGTTGAAAGAAATAAATCCAGTTTCATCTCTTTTAAATTCGGGTGGGGGTCAAAATCTACTTGCCCAAAAATTAACCAAGGCACAATTTGGGCACAAAATGGGCACACAAGATTTCTAAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //