Array 1 162719-160798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOS01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712407, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162718 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162657 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162596 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162535 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162474 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162413 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162352 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162291 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162230 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162169 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162108 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162047 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 161986 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 161925 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161864 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161803 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161742 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161681 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161620 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161559 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161498 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161437 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161376 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161315 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161254 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161193 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161132 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161071 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161010 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160949 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160888 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160827 29 93.1 0 A...........T................ | A [160800] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181208-179226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOS01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712407, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181207 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 181146 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181085 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181024 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180963 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180902 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180841 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180780 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180719 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180658 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180597 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180536 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180475 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180414 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180353 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180292 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180231 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180170 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180109 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180048 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179986 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179925 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179864 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179803 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179742 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179680 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179619 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179558 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179497 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179436 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179375 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179314 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179253 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //