Array 1 16226-13679 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIIB01000009.1 Streptococcus suis strain LSS78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 16225 36 100.0 30 .................................... TTTATTCACAGGAAATATAGGTGGGGCTAT 16159 36 100.0 30 .................................... AAACAACGGACAGACGGAAAATGACTTGGC 16093 36 100.0 30 .................................... AGGTTGTTGAGTATCGGAATTATCGAGAGT 16027 36 100.0 30 .................................... AATAATAGTATAATAGATACATAAGGTAAG 15961 36 100.0 30 .................................... GCAGACGGAAATCACTCGATTGCCGAGAGC 15895 36 100.0 30 .................................... AAGCCTCTTGGACAATAGATAAAATCGCGG 15829 36 100.0 30 .................................... GAGTGTCTCTGATGGTGTGATTACAATCCA 15763 36 100.0 30 .................................... ATGATGCCAATGATAAGCCCATAGAGTGCT 15697 36 100.0 30 .................................... GGGTCATGTTAGGGATGACACAGAAGAATA 15631 36 100.0 30 .................................... ATCGTACACTATTCCAGCAGCACCTCCATA 15565 36 100.0 30 .................................... TTGTAGTGAAGCCTAGCGGAAATATGACTG 15499 36 100.0 30 .................................... AACTGCTGGATAGTTTGGAACTTCTTGGGC 15433 36 100.0 30 .................................... ATGCCAAAGCCAATTATCGTATCAAGTAAG 15367 36 100.0 30 .................................... AATGGGTTAAATTAGTAACGAGACCCCTCA 15301 36 100.0 30 .................................... GTAATGCTACCACACCTAATCCTTGTGATT 15235 36 100.0 30 .................................... CTCAGTAGTGGTAGTTTGAGTAGTCACTTG 15169 36 100.0 30 .................................... CCTTATTTTCGGAGTTAGGCACCTTGTTTT 15103 36 100.0 30 .................................... GGCAAAATAGCAAAAACCCTCAGCGTTTGC 15037 36 100.0 30 .................................... CTCAAGAATATAAGAATCAAGCGGGTTCTA 14971 36 100.0 30 .................................... CACATTACGAATAGTTAGATAAAGGTCTGT 14905 36 100.0 30 .................................... TGGTCGCCGCTTTCATTATTGATTTGGTCT 14839 36 100.0 30 .................................... TGATGGAAATTGTCAGCAATTTTCTGTGCG 14773 36 100.0 30 .................................... AAATCTTGGCAAGACAAAGTTGCTAAATAT 14707 36 100.0 30 .................................... CCTTCATTCCGACTACTAAAATCATCATAG 14641 36 100.0 30 .................................... AGTATATGGAAAAAACATTTACCTAGTAAA 14575 36 100.0 30 .................................... AGACGCTGTTGTATCTGAGGTTGCTAAATA 14509 36 100.0 31 .................................... ATATTGGCGGGGCAATTAGTAGCGGTATTAG 14442 36 100.0 32 .................................... AAAACATACTTGTGCTTTCTTATTCTATTATA 14374 36 100.0 30 .................................... CCGATAGTGTGCCGATAATCACGTAGGACT 14308 36 100.0 30 .................................... TAATGCGGTTGATTTTATGCGAAATTGGGA 14242 36 100.0 30 .................................... AGCATTTGAAACATAATAATCTTGGAACAT 14176 36 100.0 30 .................................... GAAAAGCCATCACCATATCATCAATAGAGT 14110 36 100.0 30 .................................... CCCAACGGGCTTTTCGGAATAAATTGCTTA 14044 36 100.0 30 .................................... AGCATTGGCGTTTGGTATTAAGATGATGGT 13978 36 100.0 30 .................................... TACTGCCTTGCTTGGATATTTCCATACCGT 13912 36 100.0 30 .................................... CCACAACCTCGCCGATTGTTCGCATGTCTT 13846 36 100.0 30 .................................... GCGAACTTAATCATATCTTCAGCGGTTAGT 13780 36 100.0 30 .................................... CACCCAAGGAACAGCAAGACCAGCTAATGA 13714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 39 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCATATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGATAAAAAATAGTCTACGAG # Right flank : GTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTAGTTATAACAGCAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //