Array 1 10494-12109 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSE01000024.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4380 NODE_24_length_34452_cov_3.81449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10494 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 10555 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 10616 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 10677 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 10738 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 10799 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 10860 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 10921 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 10982 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 11043 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 11104 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 11165 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 11226 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 11287 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 11348 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 11409 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 11470 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 11531 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 11592 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 11653 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 11714 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 11775 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 11836 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 11897 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11958 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 12019 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 12080 29 100.0 0 ............................. | A [12107] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7436-6250 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSE01000004.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4380 NODE_4_length_434360_cov_3.80008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7435 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 7374 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7313 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 7252 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 7191 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 7130 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 7069 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 7008 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 6947 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 6886 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 6825 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6764 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6703 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6642 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6581 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6520 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6459 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6398 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6337 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6277 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //