Array 1 14344-17402 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJPX01000024.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 070885 Contig_21_ssf_070885_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14344 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 14405 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 14466 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 14527 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 14588 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 14649 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 14710 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 14771 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 14832 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 14893 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 14954 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 15015 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 15076 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 15137 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 15198 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 15259 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 15320 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 15381 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 15442 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 15503 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 15564 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 15625 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 15686 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [15706] Deletion [15726] 15728 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 15789 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 15850 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 15911 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 15972 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 16033 29 96.6 32 .............T............... TACCGTTTTTACTCCCCCGCATTTGGTTACAC 16094 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 16155 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 16216 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 16277 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 16338 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 16399 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 16460 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 16521 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 16582 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 16643 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 16704 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 16765 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 16826 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 16887 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 16948 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 17009 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 17070 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 17131 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 17192 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 17253 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 17314 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 17375 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33948-36173 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJPX01000024.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 070885 Contig_21_ssf_070885_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33948 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 34009 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 34070 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 34131 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 34192 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 34253 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 34314 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 34375 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 34436 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 34497 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 34558 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 34619 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 34680 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 34741 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 34802 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 34863 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 34924 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 34985 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 35046 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 35107 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 35168 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 35229 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 35290 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 35351 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 35412 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 35473 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 35534 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 35595 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 35656 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 35717 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 35778 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 35839 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 35900 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 35961 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 36022 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 36083 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 36144 29 100.0 0 ............................. | A [36171] ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //