Array 1 45114-46258 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000001.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45114 30 100.0 36 .............................. TTGGGACTTTCACGATTAAAAATACAGATGCTGAAA 45180 30 100.0 35 .............................. GCCAAAGCTTGCACGGTTTCAGGAGTTGTTGCTTG 45245 30 100.0 36 .............................. TAGTCTTCTTTTTTACCTTTCCACGTATGAAAATAA 45311 30 100.0 35 .............................. TCTCTAGCCCCGGAGATCATGGCGCGCCCTGCGTC 45376 30 100.0 36 .............................. AAAATCTGGTTTTAATGCTGGAGATATTGTAATTAC 45442 30 100.0 35 .............................. CTGCTGAATACGTAACACGCTTTGAAGAAATGGAA 45507 30 100.0 37 .............................. TAAAATATTCTTTGACCACTCTGCCATAGCATACTAA 45574 30 100.0 35 .............................. AGAAGAAGGTGACTTTGAAAAGATAGATAGATTGA 45639 30 100.0 36 .............................. TTTACAATAAAAATCCCCCTGTTTTCTTATTAATGG 45705 30 100.0 35 .............................. AAACAACAGAAATGCAAACAATAGAAAAGTAGGGA 45770 30 100.0 35 .............................. TCAACTAGAAGAACAATATAAAGAGGAATGTTACC 45835 30 100.0 34 .............................. TACATTTCTCCTTTTTTCATCAACCTTCATTTTC 45899 30 100.0 36 .............................. AATAGAGTTGGTGAACCACTTACCACCTAAACGCTC 45965 30 100.0 36 .............................. ATGACTCTTTTTAAACATTGTATACGTGGATTATTT 46031 30 100.0 35 .............................. AAAGGTTTTCCATCTTTAAAAGTAATTGTAGGGTA 46096 30 100.0 36 .............................. CTTAATATGGTGGACCGTGGCATTAAAGAACGTCCT 46162 30 96.7 37 .............................T TACGGATAGATTATGTATTATAAATTCTAAATTAAAG 46229 30 93.3 0 ....................A........T | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.4 36 ATTTAACTTTAACAAGTGTTGTATTTGAAC # Left flank : TGAAATATCTACCCAACAATTAAATAGTAATAGGTTATTATCTGAAAAACAAATCATTTATATGTTAAATGTATTCTATAATAAAAGAGTTGATGTTTCTTTCTATAATCAAATTATTGATTGCTTTATCTATAAAATTTATATTTACTCCGACAAAATATGTATTGTCTATAACCTGAATAATAGTGATAAAGACGTGACTTACTCTGATATTAACGAATTATATAAAAGTTCGCACCTTAACTCATGCGGTTCACCATATGATTTATAAAATTAAAGCAACTATCATTGATAGTTGCTTTTTGTTTTTTACTTAATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAATCTTGAAAATTAAACCTTTTTATAAAATCTCCCAAAATCCTATTATCGCTGGTAAAAAATAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAGTCATAAAGATTGATTTTTTGAGC # Right flank : TTTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAATCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGTCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAAATAAATATTAACTGATCAAAATTAGCAAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 14206-14434 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000020.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 14206 31 100.0 35 ............................... TTATTGTCCTGCACCTCTTTATAAAATTAAATCAT 14272 31 100.0 35 ............................... ACAAGCATTTCTTCTGTGTATATCTCCATAACCAT 14338 31 96.8 35 .................A............. AAGTTAGAATTCTATATAATCTATTTAAAACATCT 14404 31 74.2 0 ......C..T......TA....GT.....GA | ========== ====== ====== ====== =============================== =================================== ================== 4 31 92.8 35 GATAAATATCAACAGAAGCTGTACGAATACT # Left flank : CTTAATCTATAAAAATGTAGGTAAACTGTATGATAAACTATCAAAAAAGGTTTATATATAGCAGATAAGAAGCTAATAAGAAAGTATCTAGTATATGTATGGTATTATGTGGCGGATTGTATGATAAACCTTGATGCATTAATATATATAGCCCCCCCAGTTACTTTAATAGAGTTGGTTTTTCATAGACCGGAGAGTCCACATTTGTGAAAAATACGTCTAGTTGGCGTATGGGGTGTGGTATATGACCGCCACAAAGTAAGTAAATGTTAAATAGTCCGAATTGAACCATATTTGACATTTTATTTTTAGAAATATATTAACAAAATTTTTTATAAGATTTTACCAACTAAATTTTTATAAAATATTGATATATACTATGGCTATAAGCTTTATAAAATTATGTATTCTTTCAATATTTGCTGGTAAAATTTCTGAAAATCTTGCAATATCAATGATTTATAACTATAATGTAATTAATAAATTCTAATATTACTAGG # Right flank : AAAAATATTTTGTTGTTGAGTATATATCACATTCCGAAAAAACGGGAAAAGGATAATATAAATAAATCTTTCTGTTAGCAGTGAAAATAATTAAAAGCTCTATTCAATATAGAATAGAGCTAATTTTTGTTTAATCGTGGTTAATGTGAAGTAGTTTGCCCCTTTTTTGCCCCTTTTTGAGTAAATAAGGCTGTAGAGGTTGATATATAAATATGTTCCTGTCTTCCGCACCATTTGAAATTATAGGCTTTACAGATTTTCTGTAAAGCCTTTTTTGTTTTTTATAAATTATAAAGTTATATTAATTTAATAAATGAAATCGCATTTTTGAGGTATTATTGATTATTTTTGATTATAAGCATATAATTTAGATAGGATTTATTTCTAGTAAGAAAGGTTGAATTTCAATGAAAGTTTTATTATTAAATGGTAGTAGACGCGAAAAAGGTTGTACATATACAGCTCTTAATGAAATAGCACAAACTTTAGAAAAACAAGGT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGAAGCTGTACGAATACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 19186-18831 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000004.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19185 30 100.0 36 .............................. ATGGCATTACTACAAGCAGAAAATGCAGTAGTACGT 19119 30 100.0 34 .............................. TGAGCTGTATTAAGTTGGTTTCTAGCGTTATCAA 19055 30 100.0 34 .............................. GAAAATGGCTTGCTTACTACAGGAGTAGGGCAAA 18991 30 100.0 35 .............................. TCGTGTACGTGAAGAACGATATCATAGCCTGCCAT 18926 30 100.0 36 .............................. ACGTGATAGATGGTGTCCAAAATTTGTTGACAAGCA 18860 30 93.3 0 .................C........A... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 35 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : CCAAGGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTCGATCAACCAATCGACAAAGCCAAAGAATTATGTCGTTTATTCATTGGCATGGTTCAAGGTACAATCACTGACGAAAAAGAACTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTATCTAAAATTTACCAGCCAAAATCAAGAAAAATCCCGCTAATCCTTGATAAATAAATATTTTCACTAAATCCTTTCAAATCTCATGATCGCTGGTAAAAAATAACTAAAATCCTTGTTTATTAATACTTTTAATAGTATAATAAAAACCATAAGGATTAATTTTTCTAGC # Right flank : TAACTCTCTAGCATTAGTATAACAATGAAAAAAGCCTTAGGAACTGACCATTCCTAAGGCTTTTGTGTGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAAAGCTTATTATTATCGTGCAAATTAGAAAAATAAACTTATATCTTTAATTCTTCTATATCAGCTAAAAGCTTATCTAATTTTTCTACAACTATATAACGCAAGAAACCCCATGAAGGTGCGAACTTCATGGGGTTTTGCTGTCTATATGACTCTTTTGTTATGTTTTGCCTATACTTAGTATAACACATTATTTAACTTTAACAAGTGTTGTATTTGAATTTATAAATTTTTATATAGTAAAAATTTATAATTATTATATTATTATTTTCTCACAAAAGTCATAATTATAGTATTTTCACCATAATTATGCTTCATTTTCTCATAGTTTTTAACCTCAATAGGTGTTATAACTACAGTCTTTAAGTTAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 71545-71970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000003.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 71545 30 100.0 37 .............................. GGTGTGTAGTTATAATATTCTATTGTATCTTTGTAAT 71612 30 100.0 36 .............................. AGCTTCTTGTTTAGTGCGTGTTCTACATTCAAATAT 71678 30 100.0 37 .............................. TATTATTAACTGGGCTAGCCAAAAATTCATCTTCTGT 71745 30 96.7 35 ...............T.............. TTTCTCCTGCCTTTTCTGTTTCTTTGTAGCCTTTA 71810 30 96.7 36 ....................A......... TATCCATTTATTACTACCTACCTTTTTATTATTTAA 71876 30 96.7 35 ...............T.............. TCTTAATCAACATATTTACAAGAAAAACGGCGTGA 71941 30 86.7 0 ...............T.......TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 96.7 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTATATTATGTAATTTTCCTAGATTTTCTCTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATAATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACTTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTTGCTGGTAAAAAATCCCTAAATCTTGATAAAATCACTATTTTCATATATAATATATTTCATAAACCTTAATCTTTAAGGG # Right flank : AAGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGCGTATTTACTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAATGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTATCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : GATAAATATCAACAGTTACTGTACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3111-3406 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000049.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf49, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3111 30 100.0 37 .............................. TTGATGAAAATACATCTTATCCTGGACAATTTAAGAT 3178 30 100.0 36 .............................. TTTTGAGAATATGATGCAATTCTGTGTCTTACTAAT 3244 30 100.0 36 .............................. TTGTTCCATAATACTCACCTTTATTTAAATTCAATA 3310 30 100.0 37 .............................. TAGTATCCTCTATCATTATTTTTCTTGATTGCTTTAT 3377 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 37 ATTCAAATACAACTATTGTTTCTATTAATC # Left flank : GAAAACACCTCATTATTTATATATTATTTTTATTATATACACAAAAAGAGGATGACGCACGTCACCCTCTGATATTACAAATTAAAATATACGTTAAACGTTTTTGTTTTAATTAGTAACCCTAGTGACTAGCACGCCATAAGGTGAGAAGCGGTGACTTCTTCTTGTGGAATACGTTGCATCTCAAATACAACGTAACTTAATATATCACAAACTATATCCACTGTCAATAAGTTTTTTATAAATACAACTCTTATTATAATTTTTTTCTAATATCTATTGTATAACCTATAGAATCTAACAAGTCTACCAACATGTTAAATTTTATATTATTATTTGATAATGTTTTTGTAAAAGTTTGTTCCAATAAATTTTTATTATATTTTTTATTGTATACCGCTATTAAATCCCTTCTTGTAATTCCCTCCTGATAACATATATCAATAATAACTTTCTTTATATCTTTTACATTTTCCACAACTATTTATCTCTCCTAATTC # Right flank : CCCTATATTTATCAACATTTCTTTTTTTATTATAGCTTCTAAAACCTTGTTATTCAAGGATATTAAAAATTTTTACCAGGCGATTTTGATTTTTATTAGTTATGTAAAAAAATAGTCTATAAAGCTTATATTTCTTAGCTTTATAGACTATTTAGTAAAAATTCACTTGATAATTTTTATTTAAGATTGTAATGCTCCTACAAGTTCATTTACATCTTCAATATTATGTTTTTGCATATATTCAGCGATACCATCTGCAATTACTTTTAATGCTGATGGGTCAATAAAGTTATGTGCTCCTACTGCGACTGCTGTTGCACCTGCAAGCAAGAATTCAATAGCATCTTCTGCACTTGCAATACCGCCCATACCAATGATTGGAATGTTTACAGCTTTTGCTACTTGCCATACCATACGAAGTGCTACAGGTTTTACAGCAGGGCCAGAAAGACCACCTGTGATATTGCCAAGTAATGGTTTTCTTGTATTGATATCTATTG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACTATTGTTTCTATTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2715-5313 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000043.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2715 30 100.0 37 .............................. TTTTTAGTAAAAGTATTGATTTTATTGGGCTTATGGT 2782 30 100.0 36 .............................. CGTCTATTGACGGAGCATTAGCAATTTGTACAAGAA 2848 30 100.0 36 .............................. GAAAACTTTTTCATTACTGTTTCGGTTTTCTCTATA 2914 30 100.0 36 .............................. AGTTATATCTAATTGGGAACGTGGATACACATCATC 2980 30 100.0 36 .............................. CGACGAGTGAAAATAAGGCTTTGATAAAAATTTTTT 3046 30 100.0 35 .............................. TGGTGATGGTCGGACATTTTTTTGATAATGTTATT 3111 30 100.0 36 .............................. GAGCAGAGTAACAGAAGAACAGATGGCGGCATTACT 3177 30 100.0 34 .............................. TGGCGTTTGTTGGGAAATATCGGTCTTTTAAGAA 3241 30 100.0 36 .............................. ACATCTTGGATTTGGCAACTAGCTTTTGAAACATAA 3307 30 100.0 34 .............................. TATTCACTTTGCTCTTGGTCTAATAATTTATTCA 3371 30 100.0 37 .............................. AAGTTCGGCACTATAGTTTTGTAATAATTTATCTTTA 3438 30 100.0 35 .............................. TCATTAAGCCATATAAAACGAGGATGCATATATGC 3503 30 100.0 38 .............................. TGGCTATAACAACAAATTATATGTGTAATGAGTTCCAT 3571 30 100.0 36 .............................. TGGTGAAAATAGAGAAGTTTATAATATCTTTGGAAA 3637 30 100.0 36 .............................. TTGTGTTCCTTATAAATGGTTTGATTGGGATATTTA 3703 30 100.0 36 .............................. TTGATTTTGTGTGTTTTTACAGATGATTTAGTTGAA 3769 30 100.0 35 .............................. AGATGAAGTTAATCAAAGAGTTAAAATGGTTAATG 3834 30 100.0 37 .............................. TCTAATGTTTTCTCACATACAGAAGTTGTATAGATAA 3901 30 100.0 36 .............................. TGATAAATCGCTCCTTATTTTGTGATTTCTGCCTTA 3967 30 100.0 37 .............................. TATTAATATCCATTACATTTACCTCCTAGATTAACTC 4034 30 100.0 35 .............................. AGTTTTATAGTATATCTTATTTCCTTTAACGATAG 4099 30 100.0 35 .............................. TTGAAGGATAATGCTGTTATTTATGGCATAGGAGA 4164 30 100.0 34 .............................. ATGATGTTGATGGTGAAGAAGGAAAAATCTTTGA 4228 30 100.0 36 .............................. AGGGATAAGCCACCATGATTTATCGTACACGATTGA 4294 30 100.0 36 .............................. TTTAAAAACTCTTGTAATTGTTGATCCGTAGGTGCA 4360 30 100.0 36 .............................. TTTAAAAACTCTTGTAATTGTTGATCCGTAGGTGCA 4426 30 100.0 36 .............................. TTTAAAAACTCTTGTAATTGTTGATCCGTAGGTGCA 4492 30 100.0 35 .............................. TGTATATTCCGCGCGGTGCAGACGGCGACACGTTT 4557 30 100.0 36 .............................. TGCGTTAAGCCTTGAATTGGTATTCCTGCTTTACAG 4623 30 100.0 36 .............................. TACATTTCTTTCCAATTATCACACATTTAATTTTTC 4689 30 96.7 35 ................A............. TCATCTGTTTCTAAATCTCTAGCAGATTTGTAAAT 4754 30 96.7 36 ................A............. TTTGTTTAAAGTAATATATCATATCGGCAGAACTAA 4820 30 100.0 36 .............................. CTATAAACGCAATAGCAATACCTAACGATAATGATG 4886 30 100.0 35 .............................. ATGCTTGGTGGAAATCAAAACGTTGTTTACCCTAT 4951 30 100.0 36 .............................. TAATTTAATGCAATATAAATATATAAAAAATACACG 5017 30 100.0 37 .............................. TGGATATGATAGAACATTTTCTTAGCTAATTTTCTTT 5084 30 96.7 36 ................A............. TAAATCCTTCTGCATCAAAGCCCATCTGTTTAAATT 5150 30 100.0 36 .............................. TTTTCATGCCTTTTACATCAACTACTTCTTCTATAC 5216 30 93.3 38 ...............TC............. TTGGCGATATAAAATAAAATCGCGATATCTCGTGTTAT 5284 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.2 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGTGGTAAAGAAAACGCTGTCAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTTATTTTCCCAACCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATAAAAAATCACTAAAAATCCTCAATCGCTGGTAAAAACTTATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTGATTTTACTGGT # Right flank : AATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTTTTATGATATAGAAAAGAAAAAGTTTATTAAAATTGGTACTGCTACTGAACATAATACACCATTAATCACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGGAGCGTTGTATCTTCACTTGTAGCTCCTGCCGCTGCTATCGCTACATATGGATTTAAATATTTTACTAATATTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTTAAAAAGGCTATTGTGCCTATCTGTGCATTTGCAAGCGACTCGAGCATTACACCAGATAAACTATACCAACCCATAGATGCACCAATAGATAGACTATAAACTAAATTCATATTAAATAAATAGCCACAAATCATACCGCCAAAAATAGATCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATAGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 20352-19663 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000007.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20351 30 100.0 36 .............................. TTTACATACTCAATTAATTTGTTTCGTTCTTCTTTA 20285 30 100.0 35 .............................. TGGCTCTATTGCTCTTTAACGGATTAGCTACTATA 20220 30 100.0 37 .............................. TGCCCATAAAAGATAAATATGACTACATCATCATTGA 20153 30 100.0 36 .............................. CAGGCAATGTAGCCAAGCAGACTGTAAAAGAAATTA 20087 30 100.0 36 .............................. AGATTAGATGCTCGCTCGTATGTTTCATACAGATAT 20021 30 100.0 36 .............................. TTTTTTTAAACTGTAAACCTTCCTAAAAATTCTGTA 19955 30 100.0 36 .............................. ATGTATGAGATGTCGCTTGCAAGTTCCTTTAGGTAG 19889 30 100.0 36 .............................. AGAAGCACAGTCTGCACTTAGTGGTGTGGGTTCAAA 19823 30 100.0 37 .............................. GTTATAAAGCTAATATAGAAAAACAAAATAATTCCAA 19756 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 19691 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.9 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGCTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTATAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCGACTTTCTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAATAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATAGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 833-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000008.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 832 27 96.3 39 ...............G........... TACTTTATATTTGGATTGTCGTAAAACTCGGCAATCTGA 766 27 100.0 37 ........................... AACTATATTTTCTTTACATCATGACTAAAACATTCTT 702 27 100.0 37 ........................... AACAATACAGTCGGAGCACTGGTATTAGAGGAATTAA 638 27 96.3 37 .................A......... TACTCTTTTGTGTTTAATCCTTTAAAAAAGTTTTTGT 574 27 85.2 0 ..............A..A.....TA.. | ========== ====== ====== ====== =========================== ======================================= ================== 5 27 95.6 38 GATAAATATCAACAGATGCTGTACGAA # Left flank : GATTTTTTTTCTTAGAAACACACTCAAGAGCTTCATTCAAAGCTGTTTCAGCTATCTTACAATTTTCTCCATATGTATTAGCAAACATTGGAATATATTTATTAATTTCATTTAAAATCTGTATGGCTTTATCATAATCAACTTCTGAATTAATGTTATAAATTTGTGATGAATTATTTGTTTTTTGTTGTATTTGAACATCATTTACATCACCATTGATTCTAATAGAATAGTTATTATTTTGGATATTGGATAAATCTTTTTTCATAATTATTCTCCTTTTAATTATACAAATTCATTATACTATTTCTATGTTTAACAAACAAATATAATATATAAGTTGTTATATTAAAGACACAAAATTATATAAATTGATTTATGATTACTAGCTTTATAGATTTATAACCAATATTTGCTATTTGCTGGTAAATCTTTTTAAAGTCTTGCAATATTAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : GAAAATTGAATATGTATTATTTGAATATGACGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAACTAATTGACATCTTGTTATATATTTATATATGGCGGTTAAAATTAACGTACTGAAAACGTACTATAAAAATAAATAAACAAACAAATTTAAGTTAATTTATATAAAATATCCTATATAATGCAGGCAAAAAACCAATAAAAAATACTAGAAAAAATATATTGCATTGAATGGGAATAAGATAAAAAATATAGCTAAGTCCTTAATTAAGGACTTAGCTATATTTTTTATTTTATAAGATACTATTTTATTTAAAATAATGTTTCTTTAAAATTTTATCTGCTACTTGTACGCAATCTTCACAAGATAAAATTTTATTCTTCTGCATATTTTTCAAATCTCTACAATATATTGAACCACATTTTTCTTTAAATAATTTTGCTACTTCTTGAAATTTATTATATGTATCAAATTTACTTT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATGCTGTACGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 58935-60555 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTP01000008.1 Megamonas rupellensis strain AF27-12 AF27-12.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 58935 30 100.0 38 .............................. TAAATCTCTCTATATATCTACTTGCATTTTTTTAATAA 59003 30 100.0 38 .............................. TAAATCTCTCTATATATCTACTTGCATTTTTTTAATAA 59071 30 100.0 38 .............................. TAAATCTCTCTATATATCTACTTGCATTTTTTTAATAA 59139 30 100.0 37 .............................. TTTCCGCAATCACAACGACAAAGTATTTTACCACCAC 59206 30 96.7 36 .......T...................... AAAATGCTTAGGCATAAGATTTATATTTCCTGAAGA 59272 30 100.0 37 .............................. CCAAATGCCCTTGGTGATGCCTTCTTTTTTTATCTAT 59339 30 100.0 36 .............................. AGGTATTCAAGTGATGGACTGTAAAGAAATAAATCT 59405 30 100.0 37 .............................. AAATACTATTAGTGAAGATTTTATATTAGAAGCTTCA 59472 30 100.0 36 .............................. CCATGTTTAAAGGCTTCAATAGCTTGTATCATATAT 59538 30 100.0 36 .............................. TCTGCTGATACATTCTTTATGGTTAACGTTAAGAAT 59604 30 100.0 36 .............................. GTGGCGTCGTTCTCTTAAAACCTTTGCTCAAGTATC 59670 30 100.0 36 .............................. AGTAGGTTTTGCCCAACAGTATACTAATTATGATTA 59736 30 100.0 36 .............................. GTGCAAGCAACATTACTTGCTCTTGATATACAATAA 59802 30 100.0 35 .............................. TCTATATTACTTTTTAATTCCTTAAAATCTGTTGC 59867 30 100.0 36 .............................. AAATGAATATATTAGATAAATCTAGACTAAAGGCTA 59933 30 100.0 36 .............................. AAAATTTCTATCTTGATACTCTAGTAATAACTTGAA 59999 30 100.0 36 .............................. ACCAAATGTCGGTAAAAATAGTATCTGATGATGTAT 60065 30 100.0 36 .............................. TTGAATATCCTGTTTGAGTTAATCCAAGATATTTAG 60131 30 100.0 36 .............................. ACAGCTACTAAGCCAGTAATTAAAAAAATGCAATTA 60197 30 100.0 36 .............................. GTCTTTGCAACAAATAGAAAATCTTTGGAATAGATT 60263 30 100.0 36 .............................. ACGTTATGCAGCTTGCTATAATTAATATTTATATAA 60329 30 100.0 36 .............................. AAATGCCACATTCTGCTACCACAGCAAGCATCTAAT 60395 30 100.0 36 .............................. AAATATACCATGGGATAAAAAAACTATAACCATAAG 60461 30 100.0 36 .............................. ATATTGGGATAATACAGGTGTAATTTTTTATGAAGC 60527 29 86.7 0 ...........G....A....-....A... | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.3 36 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTATGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCGAAATTAATGAAATTAAAGTTAGAGTTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTTTATAAACCCTTATAAATAAAAGAGATATAGTGAATTTCTTGCATTATAAAGATAAATACATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGTTTTTGAACTATATTATAAAATGTAAAGTCTTTAAAAACGAGG # Right flank : TGAACTTAGCAATAGAAATATATAGATATTTTAAAACAAAAAATGATAATAAATTATTATGAATAAATATATAATCTATTAATAATTTTTATAGACTAAAAGAATTATTTTTGTTATAATATACAAACTATGACTTTGGAGGTATATATTTGACAAAAATAAAAATATTATTGATTACTATTTGTATTATGGTGATGTCTACTATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAACGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGCATTGGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACGATAAAGATTTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATAGTATAAACATAAGGATGTTGTTTTGTATAAAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //