Array 1 920107-920683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033344.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN076211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 920107 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 920168 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 920229 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 920290 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 920351 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 920412 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 920473 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 920534 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 920595 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 920656 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 936820-938742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033344.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN076211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 936820 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 936881 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 936942 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 937003 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 937064 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 937125 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 937186 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 937248 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 937309 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 937370 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 937431 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 937492 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 937553 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 937614 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 937675 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 937736 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 937797 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 937858 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 937919 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 937980 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 938041 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 938102 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 938163 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 938224 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 938285 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 938346 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 938407 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 938468 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 938529 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 938590 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 938651 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 938713 29 86.2 0 TAA.........T................ | A [938737] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //