Array 1 420894-419096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNW01000002.1 Cronobacter dublinensis strain cro1046W contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 420893 29 100.0 32 ............................. GCATTCTTCCATTGCAATAGTGCACTATCCGC 420832 29 100.0 32 ............................. CCCTGGGTCGTGAACTGGGAGCAGGAGCTTAA 420771 29 100.0 32 ............................. CGCCGCCTGGTCGCCGACCGGCCAGAGGTGGC 420710 29 100.0 32 ............................. GCGGGCGCACTCGTCCAGGTCAGTGGGGATAT 420649 29 100.0 32 ............................. CCATCGCCGCCGCTGGTGTAGAATCGCGCCTC 420588 29 100.0 32 ............................. TCGCCGGTCGGGTCGTACGTGTCTTTGTCTTT 420527 29 100.0 32 ............................. CAATTGCTTAACGCCGAGGTGGAGCAGCAGGC 420466 29 100.0 32 ............................. TTGACCAGCCGCACCATGCCCGCGCGGTGGTC 420405 29 96.6 32 ........................G.... TTTCGTTTGCGTCGCCCGCGTGCGTCGGGACG 420344 29 100.0 32 ............................. AAAGAGGCGTACAAGGAGGCGAAAAGCCTCGG 420283 29 100.0 32 ............................. GCACGCTGACACATACCTAAAAAACGCCAAAT 420222 29 100.0 32 ............................. CTTTACGGCTCCGACCAGCTCGCGGGCGACTA 420161 29 100.0 32 ............................. ACCTGGTCAAACAAATGACTGACGCGCAATTG 420100 29 100.0 32 ............................. TGCTCCCAAAGCGATTGCAGGCATTCGTGATA 420039 29 96.6 32 ..........T.................. CGGCGGCGCTGGCCGCTACACCGGGCGAGTGG 419978 29 96.6 32 ............................A CGCATCGCTGAACTGGAGGCGAGGACGGTTAA 419917 29 100.0 32 ............................. CAACGCCCCGCCAGTGTAGGAGCACGGCAGGG 419856 29 100.0 32 ............................. GATTTCCTGATAATCACACTCAAATAGCCTGG 419795 29 100.0 32 ............................. GATGAGGCTGTCCGGACAGGAGGTCGGGCATT 419734 29 100.0 32 ............................. GTCGGTAATCGGCAGCGACATAAAAAATATGT 419673 29 100.0 32 ............................. AGTACACGCGAATCGTTCCAAAATGACACCGA 419612 29 100.0 32 ............................. GTGGTGCCGCGTGAAAATACACTTCTACAGCC 419551 29 93.1 32 ...........AG................ GTTATCCAAAACCTTAACCACCCCCGACGCGT 419490 29 96.6 32 ............G................ CCGTTTTTTCAGCTGGCCATAATATTATCGCC 419429 29 96.6 32 ............G................ GATGCCGGGATTACAATGGATGACGGCATGGA 419368 29 96.6 32 ............G................ TACAGTATTTACCGCATCGTTAGTGACGCGCC 419307 29 96.6 32 ............G................ ATTTCGCTGAAACAGTAACGGCGCTCTGACAG 419246 29 96.6 32 ............A................ CGCGAACAGATACCAAACGAGATGGGTTTGGG 419185 29 96.6 31 .C........................... CTCGGCATTACAGTCAAAAATCTGGAGAGCC 419125 29 75.9 0 ..A.....TC.A.C......A.......T | G [419102] ========== ====== ====== ====== ============================= ================================ ================== 30 29 97.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCTGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAATTCCCTTATAGAACAGTTGCATAGCTTTAGA # Right flank : TTGGAATAATTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTGTGATTATTTTTTATAAATATGATAACGCTTCTTAAAATAGCTAACTTGTATTTTAGTTAATGGTTTTTAAAGCTTTATTACAATGTGTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAGATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGCGCGTGATCGTGCTTATAGCCAAAGCCATCATAAATGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGTAAGGCGTTGATAAAAGCAGGGTTTTATGAAGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGCTCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 448319-447314 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNW01000002.1 Cronobacter dublinensis strain cro1046W contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448318 29 100.0 32 ............................. TGTCCACGCATCCGCGCCCGCAAAAATAATCG 448257 29 100.0 32 ............................. TGCTTTAACTTCGCCGTTTTCCATTTCAATCA 448196 29 100.0 32 ............................. GGCGGGGGAGTTTAGTAACAATCCCATGCAAA 448135 29 100.0 32 ............................. TGTATCGCGTCATAAATACCCGAAATAGCAGC 448074 29 100.0 32 ............................. TAATGCGCGACAGCCAGACAAACTTTCTTCAA 448013 29 100.0 32 ............................. CCGGCACCGTCGCCCGCGTAGCGCGTCATGTC 447952 29 100.0 32 ............................. CCGTGCGCTGCTCGCCCTCAAATGCAATAGCC 447891 29 96.6 32 ............................C ATTAACCGCCTGTTAGTACCTGCGCCGCGTGA 447830 29 100.0 32 ............................. AGTAACTTATGGTCAACGGCCACCAGCGGCTT 447769 29 100.0 32 ............................. GGTTTGTGTTCACCGCTTAAGTTAATGATATT 447708 29 96.6 32 .................A........... CGTTATAGAGAGCGTGCAGCTCGATCCTCCCC 447647 29 96.6 32 .....................G....... TTAAGTTGTTGATTAAAAAGGCGCTAACCGGC 447586 29 100.0 32 ............................. ACCCAATTATTCGCGCTCGTTTTTCTGCTCTG 447525 29 100.0 32 ............................. GGCTTTTGGGTGGGGGTGGTGGCAGCGCGAGC 447464 29 100.0 32 ............................. TCGGCAAAAGTACAATTTGTGAAACGTTACTA 447403 29 100.0 32 ............................. ATATACGCCGATGCAGTGCCGGAAACCGACCC 447342 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACTATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGTCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGTAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //