Array 1 73208-71390 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUJH01000006.1 Lacticaseibacillus paracasei strain DTA72 Lac23_trimmed_(paired)_merged_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73207 36 100.0 30 .................................... CGCGAACTTGGCGACAAGTTTTTTTGGACG 73141 36 100.0 30 .................................... CTTGATCACAGACGCTACTGCGGTGCCAAT 73075 36 100.0 30 .................................... CACTTCTACCAGCTGTTAGAGGGAGCTGGT 73009 36 100.0 30 .................................... AATGGCTAACAATTCAAAGAAGTCATTTTT 72943 36 100.0 30 .................................... GTACTCGCCAGTACAAGCCGCAGAATTCCA 72877 36 100.0 30 .................................... AGGTAAATAAGCGGCTGTCGGCTTATCAGT 72811 36 100.0 30 .................................... AGCGTCCTTTGTGGCAATATGCATATAGTT 72745 36 100.0 30 .................................... CGAAGGACGTTGCTACCATTTAGGCGTGTT 72679 36 100.0 30 .................................... ACTAACCATTCGTAGTATCTTTAGTGTTGT 72613 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 72547 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 72481 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 72415 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 72349 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 72283 36 100.0 30 .................................... TCAAGATAGACCCCGTTAAATTGGGTGAAT 72217 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 72151 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 72085 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 72019 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 71953 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 71887 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 71821 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 71755 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 71689 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 71623 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 71557 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 71491 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71425 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACAAAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCTGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //