Array 1 393215-391685 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWH01000001.1 Vibrio cholerae strain VcCHNf8 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393214 28 100.0 32 ............................ TGTGAGTGTTTCTGCTCTCGATAGCACCCCTT 393154 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 393094 28 100.0 32 ............................ TACCCCGAATGGGTTCTTGAAGTAGAGTCGCG 393034 28 100.0 32 ............................ AGTCTCCTGTAATTTGCGTGAAACTTCCGCTT 392974 28 100.0 32 ............................ TTTTCTCTACATTCTGCCTATTTTCGATGGTA 392914 28 100.0 32 ............................ ATAAGGGAACAATTTACGTACTCATCCCCCCA 392854 28 100.0 32 ............................ TAGCAGAATTGCGCCAGAACCCCCGAACACGT 392794 28 100.0 32 ............................ TGTATCTTACATCACTCGTGGTGAGCAAGAAG 392734 28 100.0 32 ............................ TATTGACTATTGCATATACCGAAGATTTAGGC 392674 28 100.0 32 ............................ TCATTGCCGCGCTGGCGTTGTATCTTTCCATT 392614 28 100.0 32 ............................ TTTAATGTGATTGCTCATCACTCTTCCTCATC 392554 28 100.0 32 ............................ AGTACGGATACTCAGGGACGTTTGAAGAGTTT 392494 28 100.0 32 ............................ TCGAAGTAGATTTTCCGCGCCGCCTTTTCTAT 392434 28 100.0 32 ............................ CACAACAATCATTTCTGCTGCTTCAAGATCAT 392374 28 100.0 32 ............................ GTCTTTACGCAGCTTTCGCATAAAACGGTTTA 392314 28 100.0 32 ............................ TTGAACGTTTTTGGGGTAGCCACGTTTCAGAT 392254 28 100.0 32 ............................ TTAGTCCATCAACCGCATTCTTAACTTTGGCC 392194 28 100.0 32 ............................ ATAAAAGCTGAGCAAGCAGGCAGTGCGCGCAC 392134 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 392073 28 100.0 32 ............................ TTTATCAAGCGCATTCTGTAAATACGCTTTGT 392013 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 391952 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 391892 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 391832 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 391772 28 100.0 32 ............................ TTCACGGGCTTGTTTATCGACCATCGAAATAT 391712 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGGCCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32143-34092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWH01000018.1 Vibrio cholerae strain VcCHNf8 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32143 28 100.0 32 ............................ TCAAGCACTTCAAAGCCGTGAACTTGGTGAAT 32203 28 100.0 32 ............................ GCATTAAGCGAACGGATAGATGTTGCTTTTAG 32263 28 100.0 32 ............................ TTGATGCAGCATAGTTTGCAGCCGCTTGAAAT 32323 28 100.0 32 ............................ CTCCAAAGAGAGCGTTCTACTCCTTGATGCAG 32383 28 100.0 32 ............................ TGCCATTGTGTCTATATGGCTCAGCATGTTGC 32443 28 100.0 32 ............................ ACGTGCATATTGCCTAAACTGCCCAGCTCTAT 32503 28 100.0 32 ............................ TCCTTTGCCTTTAACACCGGATGCCAGCGCTA 32563 28 100.0 32 ............................ TTTCATGATTTGGCTTAGCGTGGCAGGAGATA 32623 28 100.0 32 ............................ TCACCATCTGCAGGTTTTGCTAACTTACTTTC 32683 28 100.0 32 ............................ TGCGATTGATTTGTTGAAGGTTACACGTTCAA 32743 28 100.0 32 ............................ GATACAGGTCTGTAAATCGTCTTCTACATGAC 32803 28 100.0 32 ............................ ATTTCAGGCATTTCGCGACGAGCATTAGACGT 32863 28 100.0 32 ............................ AGTATTAGACTGCCATCAGGAAAGTGAAACTT 32923 28 100.0 32 ............................ TTCAATTTTCGCCTTCAGCTCTTTGCGCTGCT 32983 28 100.0 32 ............................ ACAAGCAGAACGGTTTCTTTGGTGCGCAAAAA 33043 28 100.0 32 ............................ CGGTTTTCAGTTCGCAGCAACATTCAGCATTC 33103 28 100.0 32 ............................ ACCACACGTCGGCGCGTTCAAATGATTTAATC 33163 28 100.0 32 ............................ AGTACGCGCCGCTTTACCTGTGACACGCAAAA 33223 28 100.0 32 ............................ ATGTAAAGCTGGTTGATTGATTCACATCGAGA 33283 28 100.0 32 ............................ TGAACGCCTAGGCCGCGCTCATTAATTCCCGA 33343 28 100.0 32 ............................ TAGCTCTGATAGCAGTTTGTCGGCTCGAATTA 33403 28 100.0 32 ............................ TATCACAAGAAAATTCAAGCCCACAAACAAAA 33463 28 100.0 33 ............................ TTTGAAGAGGCGACAACGATCACCTTGCAGCTT 33524 28 100.0 32 ............................ TTTAACCATGTCGGTGTTAAAAATCATTGGAA 33584 28 100.0 32 ............................ TTACGGCAATGGCCGTGTTAATAAAATCGTGT 33644 28 100.0 32 ............................ GTGATTTTCTCACCGGATACGGTCACAGATAA 33704 28 100.0 32 ............................ AGACTGGCGCTTGGCTTTATTGTCCGTTTCAA 33764 28 100.0 32 ............................ ACTTGCATCAGTTCTGACAGCAGAATGAGTAC 33824 28 100.0 32 ............................ TCCGACTGCACCGCAACCAGGTCAGACGGCGC 33884 28 100.0 32 ............................ GCTATCCGTTTTCGATTCTCAATCATTCGATC 33944 28 100.0 32 ............................ TGACCGAAGATCACAACGGGGTAAACGTCTGC 34004 28 100.0 32 ............................ TTTAATGGCTTGGGTTGGAACGGTCTCTTCTT 34064 28 92.9 0 ......................G.A... | T [34084] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATATTATGGTTGGGGTTATTTAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGTTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCTGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4267-3399 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWH01000028.1 Vibrio cholerae strain VcCHNf8 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4266 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 4206 28 100.0 32 ............................ AACTGGCCGTAGCTGGATCACCTTTGAAGGCT 4146 28 100.0 32 ............................ ATCTTCTTCGGCCTCATCAATGCTGATTGAAG 4086 28 100.0 32 ............................ TCTAAAGAAGTGAGATCGGCAGCATTAAACCT 4026 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 3966 28 100.0 32 ............................ TCTTCGGTGTTGTCTTCAATTGCAGCGATCAG 3906 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTATCTGT 3846 28 100.0 32 ............................ GCTATACAGTGACATTGAGGTGTGGTCGCCAG 3786 28 100.0 32 ............................ TAACGTTATGTTACCTAGGAAAATCTCGTTTC 3726 28 100.0 32 ............................ GAACCGGAAGACTCGACGGAGAAGGCGACAAG 3666 28 100.0 32 ............................ ATTGTCAAACTCAAGAAAGACTTCTTGAGGCT 3606 28 100.0 32 ............................ TTGAATGCGTCTTGAATCCCTTGTGGGTTCAG 3546 28 100.0 32 ............................ TTTTCCCGCATAGTTCTGCTGAGACGAGCAAC 3486 28 100.0 32 ............................ TAAAATCTTATCTGTGATTTCTTCTGCTGTTT 3426 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCTTTTCGAGAACACGTTATAGATCCAATAGAACAAGAAAAACAAGGAATAGCATACATTCCTGATGCTGACATTGAGCGTAAGCTAACTCCATTAGCACAACTTTCCCCATTATATAATCCGATCATACATCACTTGCAGGAAAAATACGGCCCTAGCTTTCTTATTCCAGTGGACTTCGACTCACCTGAATTATCAATTCGAACCGAGTGTGACGAAGATGAATAAGCCTAACAAACGCTTCAAGAGGGACAGCCAACGCATGGCATTTTTACTATGCATTGGTTTTTGTGGTTACGGTGTTATGCAGTAAGTTTGTAGTGGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTAAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTTAATTGGAGTATGTAATGAAACCGACATTTTGGAAATTGTCACAAGGGACTGAATTTTTCACTTATGAAGATATGCTTCAGTCAATTGAAGATCGCTTAGTATATGTTCACAAGGATACAGCAGCTCAAGGACAGTCATCTGTAACTCAAGGGCAGACATTTGTTGAAGCTAAAATTGGTGATTACTTCTATTTAACACATGGTAATAACGGAGTGTATGTATTAGGACAATTTACAGGTCCGATAAATTACTTCTCGAATTGGGGAGATGGATGGTCCGATCGACCATTTCGCGTAATTGCTCGCTCAAAAACGCAGGAATGTTACACAGGAATTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //