Array 1 126131-125563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007223.1 Thermosipho sp. 1063 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 126130 30 100.0 34 .............................. TTTGACTTATCTTCACGCTCTTTCTCCATGTTAA 126066 30 100.0 35 .............................. CGTCTTCCATATATTGTTTTAATATTTCTGATATT 126001 30 100.0 38 .............................. TTAGAACCCCTCCTTGTTATATTAATCTAGTGATTTTA 125933 30 100.0 39 .............................. AACAGTTTACATATTTCACCATGATTTCCATAATATCTC 125864 30 100.0 37 .............................. CATGAAATCTTGTTTTTAGATATCTTTCCATATTTTC 125797 30 100.0 40 .............................. CCAAAATTGCTTCTGGCAATGTGTTCGTTGATTTTAGCCG 125727 30 100.0 38 .............................. AATAAAAGACTACCCTTTCCTTTAATAGCTTTAATCAC 125659 30 100.0 37 .............................. CGCTCCCACCGCAGCACATCCGTTTCTTCCATGCAAG 125592 30 90.0 0 ..........................G.TG | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 98.9 37 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : ATCTTTTAAGCATTATTTTTCTTTGTTTTTAATGATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATCTTAACAACAAATCATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATATATCGCTTTTAAACAAAAATAATATCGTTTATTATAAATAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTACTTTTAGGTAACTTCCAGTTAATCAAAATGAAAATATCTTGGTTTATAATAATTTATGAGGTTTTTTAATTG # Right flank : TAAAATTTTTATTTGAAAAAATTTTTTATTTTGTCAGATTTTTTTGTTTAGATTCGTAATTATAAATGAAAGGAGAGTTAATTGGGAGGGAATTTTATGTATGTTATTATGATTTACGATGTTAATAGAAAAAGGGTTTCAAAAGTTTTAAGAATTGCTAGAAAATATTTACGTTGGGTACAAAGATCTGTTTTTGAGGGTAGAATAACAGAGAAAGATTTTAATGAATTGAGAATGGAAATACAGAACATAATTGTTGAAAATGAGGATAGTATATATTGGTATATTTTAAAAAAAGAGTTTGTTCCTTATAGGCACTATATTGGTGAACCCAAATCAACAATTTCCAGTATTATATAGGAGGGAGTTTATGGAAACATTATATGTTTTTACAGATGGCGAAATCAGAAAGAAAAATAATGCGATGTATTTGATTCCAAAATCTGAAGAAAAAAAACCAATGATTGTTCCATTAAAAAATGTTAGTTCTATTATGATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 306496-310809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007223.1 Thermosipho sp. 1063 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 306496 35 100.0 39 ................................... TTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTT 306570 35 100.0 36 ................................... GGATGGACGTTTTTATATCCCAATCAACAAATTAGC 306641 35 100.0 36 ................................... TCTACATACGGCAACAACTCAGCAAGCCAATCTTCA 306712 35 100.0 35 ................................... TTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGT 306782 35 100.0 39 ................................... GCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTT 306856 35 100.0 36 ................................... AGCATGGAGATATTATTTTTGATATTTTTAGAAATT 306927 35 100.0 35 ................................... AAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGA 306997 35 100.0 37 ................................... ATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATA 307069 35 100.0 35 ................................... TTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATG 307139 35 100.0 36 ................................... AATGGTATCCCCAATAACCCCTATAAATTGAAATTG 307210 35 100.0 37 ................................... TACCATAGGGTATCTGATAGGGTATCGATAGCCTATT 307282 35 100.0 37 ................................... AATCTTCTAACTACCCAACCGTGTAAATTTCTTTCTT 307354 35 100.0 34 ................................... TTCTTGTGCCAATTCTTTAGTAGTCATCTTATCA 307423 35 100.0 34 ................................... TTAAAGTTGGTTTTCTGGTGAAAGGTGGATATAA 307492 35 100.0 35 ................................... AAAAAAGGTATAGACTTTCAAAAAACAGAAAATAA 307562 35 100.0 37 ................................... AAATTTACAATGGCACCAGATTATTAGTTAGGAAGCA 307634 35 100.0 37 ................................... AATAGGGCTCCCGCTTGAACCCGAAAGGGAAGGGAGA 307706 35 100.0 35 ................................... ATTCTACAAACATACTATTTCACCTCCAACAAACA 307776 35 100.0 37 ................................... GAAGTAGTGTACGCTGGTGGAGAAACAACAGATGATA 307848 35 100.0 38 ................................... AGAATTGAGAATAGAGGAAAGAATTTGTGGGATAATTT 307921 35 100.0 36 ................................... TTACCAAATTTTTGCTTAAGACGCTCCCAAGAAGTA 307992 35 100.0 36 ................................... ACTCTATATCTCCTAATGCTCCGTTTCTGTTTTTTC 308063 35 100.0 39 ................................... GCATAAAATGAATACTTCAAAGAACCCTTGGGATATTTT 308137 35 100.0 34 ................................... AGAGAAGAATGGTCAAAACAACGAATACATTTGG 308206 35 100.0 36 ................................... CGTTTGTGAAAGAAATAGAAGACGGACGTATTTTAG 308277 35 100.0 38 ................................... GTTGATAATGTCCAAACCAACGACGCACATGTTCAACA 308350 35 100.0 36 ................................... TGGAATGCATGGATGAGATTAGAAAATCAACCAATG 308421 35 100.0 40 ................................... GCTGCCACCGATACCACCGTCGTAATGGCGGTGGCCGAAG 308496 35 100.0 37 ................................... TTAAATTAGAGATGTTAGAAGAGGAGGGAGACAGATG 308568 35 100.0 36 ................................... GTTTATAATTTTTCACGGGACTTACTTTAACATTAA 308639 35 100.0 36 ................................... GCTCCACTTGGGAATCTACTCCGTATTTGGAAATGG 308710 35 100.0 34 ................................... TTGGAACACCTGTTGTATACTTCGGAACATATGA 308779 35 100.0 34 ................................... ACATTTTGACCATTAACGAAGTCAGACAAGAAAT 308848 35 100.0 38 ................................... AATGTTGACGCCGATGGCCAAATAGTCATAAAGGTGGT 308921 35 100.0 36 ................................... TTTCGGTTAAATTTTCGATATCTTTATCTGTGCTGT 308992 35 100.0 36 ................................... GCACGTATTCTGGTGTTATATATATTCCACGGTTTC 309063 35 100.0 37 ................................... TCCACAGAACTATCAACAGTGAAAATATCACTAACTT 309135 35 100.0 37 ................................... ATACCAATGCAGAAAGCCCATATGCAAGAGGACTTAT 309207 35 100.0 37 ................................... CGACTGTTACTATAGCAAGTGATAAGTTTGTCAAAAA 309279 35 100.0 36 ................................... AAAGTTTTTCATTTTCTGCCTTTAATGTTTCTATTT 309350 35 100.0 36 ................................... AGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTAAGCC 309421 35 100.0 36 ................................... CATATTGTTCATATGTTTCCCAATGCCCACTAGCGA 309492 35 100.0 36 ................................... ACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGCTC 309563 35 100.0 39 ................................... ATTACTTGTAGTAATAACCGCCCCTACAGTGGTAGTCAG 309637 35 100.0 37 ................................... TTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGATT 309709 35 100.0 35 ................................... TTTTGAAGGCTTCGGATATAGAATAGAACCACGAC 309779 35 100.0 37 ................................... CTTATTATGAACGAAGCGTTGCAAATGCTTATTGGTG 309851 35 100.0 37 ................................... CTGTTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAG 309923 35 100.0 35 ................................... ATGTCTTGGCAGCTTGGTTTAATGGTGTACATTTG 309993 35 100.0 35 ................................... TTACTAATTGGTATTCACCTCTATATCCTTTTTGT 310063 35 100.0 36 ................................... ATTTAGTCTCCTGTGGAACATTTTCATCTATCCAAG 310134 35 100.0 35 ................................... TTGCAAATTTTAAATGATGCGGCTAACGATGCAAG 310204 35 100.0 34 ................................... ATTTTTTAACAGGGCGCGCAGATTACAGAAATAG 310273 35 100.0 35 ................................... ATTAAAATGTATGAACCACGCTGCAAGGTTTGTAA 310343 35 100.0 38 ................................... AGAACCCGCTGTATTAGTTTGCCCCCTTATAGTATGTG 310416 35 100.0 36 ................................... GGTTGATTGTGCCATCGGCTGTTTTTGCATATGCGG 310487 35 100.0 35 ................................... ACGTAGGTGATACGCTAAGCGGCAATTATTATCTT A [310507] 310558 35 100.0 36 ................................... TTGTGATTCCGTTTAGAGCCCAGCTCATTCAAACCA A [310578] 310630 35 100.0 37 ................................... ATCTAACAGTATCAAGGATAGTTTTGGGGATAAAAGC A [310650] 310703 35 100.0 35 ................................... ATAGAAAACTCAGGAGTAGCATTCCCAGTTATCGT A [310723] 310774 35 97.1 0 ..................................T | A [310794] ========== ====== ====== ====== =================================== ======================================== ================== 61 35 100.0 36 GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC # Left flank : GGAATATACTCCTTTCATTGTAAAGAAGTGATTTTCATGATGACATATATAATCAGCTATGATATAAAGAAAGATAAGAAAAGAAATAAAATATCAAAAATATTAGAAGAATATGGACAAAGGCTTCAATACAGTGTATTTATTTGCCAAGTTCCAAAAAAAGAACTTTATAATATACTTTTAAGGATGAATCCTATAATAGACAAAAATACAGATTCAATTTTAATTATCCCAATAAATTTATCCAAAATGGAAATTATAGGTACTGTAAAAATAGATATTTTAACCAATAATGACAATTATATATTATAACTAAATTATAACTAAAATCTATCCGCGAATCTTATTTTTCTCAAAAATATATAATATCCACGACACTCTCCAATAAACAACTATCTAACATTGAAACAAACTTATTTAAAAATTTTTTAAGTAAAAAACGTTAACACACGCATTTACGGTCCTTGACAATTTATTTTTTTTGTTTTAGTATTGATAGT # Right flank : TTGTTACTACACTTGTTTGATATCAATATTTATGTTTAAAAATTGATATAGAATTTCGGCTACTTATACTGTAATTAATAAAAAAACATGGCTCCATAGCTTTTTTTATACTGAATTCCAAAAAGTCTCAGAAATAACAAATAAAACCAACAAAAAGGTTTTTTTCTTTAAACATTTGAACTAAAAAATGAAGAAATATATCTCAAATACGTAATGTTTACGTGTGTTATCGTATAACAATTGTACTAAAACAAAAAAGTATATAAATTAATATAAAAAAATTTAATACAAAAAAATAAAGCCTAAGAAAACGATACACATGGAATATATAACAAATGGAAGATATAAAAAAGTAGTATATAGTATGAACAATTTAAAGCATGTCAAGAAAGGGAATACCTCAAGACAAGAAAAAATAGCATGGCTCCAGTATAGTACCAAAGCCATGCTATTTGAAAAATTAATAAATTGATTTTTTTTATTACGCTTTCGAGGATAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 624605-625388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007223.1 Thermosipho sp. 1063 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 624605 30 100.0 35 .............................. TTATTGCTGCCAATCATTACACTTGGGCCTCTTTT 624670 30 100.0 40 .............................. TCTCAAAGGGGAATATTCTTACTATATCCACTATTTCAAC 624740 30 100.0 37 .............................. TCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCA 624807 30 100.0 41 .............................. TTCAAATATTTCATCATCTGTTGCAATATCATTAAATTTTT 624878 30 100.0 42 .............................. GTTTTTCGCCGTCTCTAAATAAAGATTTGACTTTTAAATTCA 624950 30 100.0 39 .............................. CAAAAACAGACTTAATTTTTATTTTTAAGTTCATTTTAT 625019 30 100.0 35 .............................. TGTCCTTGTTCAATCAAATATTTAAGCTTTTTATA 625084 30 100.0 40 .............................. CGGTGGTATCGGTGGCAGCCACCTCTGCGGCCACCACCAA 625154 30 100.0 40 .............................. TAGATATTCAAAATCGTCACTGTTGATAATGTCTATTCTT 625224 30 100.0 36 .............................. ATCATACTCTAATGTACCATTGTAACCCAAATAATC 625290 30 100.0 39 .............................. AATTAAATATTTTCTTAAAAAAAGACGAGGAGTTAAATC 625359 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ========================================== ================== 12 30 99.4 39 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTTAACATAAGTTATTTTTCTTTGTTTTTAATAATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATCTTAACAACAAATCATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATACATCGCTTTTAAACAAAAAGAATATCGTTTATTATAAACAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTACTTTTAGGTAACTTCCAGTTAATCAAAATGAAAATATCTTGGTTTATAATAATTTATGAGGTTTTTTAATTG # Right flank : TCAAAGGGAAATGATAGATATCATTTCACATAATTTGAAAAGAATATACACAAAAAACAGCAAAATTCCATGATGTTTCGATTTTTTTCTAAAAAAATGCACAGAAACAAAACAGCATGACTTTGGTAGAATATCAAAGCCATGCTGTTTAAAAGTAAATCTAAAATTGCGAATTATTTTAATATATGTCTTAAAAATTCTTTTGTCCTCTGATTTTTTGGTTCTTTAAAAATTTCTTCTGGTTTTCCTTCTTCTGCTATAACTCCTTTGTCCATGAAGATTATCCTATCTGCTACTTCTCTTGCAAATCCTATTTCGTGTGTTACCACTATCATTGTCATACCAGATTTTGCAAGATCCTTCATTACCTCTAAAACTTCACCTACAAGTTCTGGATCAAGAGCAGATGTAGGCTCGTCAAATAACATAAGCACTGGATCCATCATTAATGCCCTTGCAATGGCAACCCTTTGTTTTTGACCACCTGACAAATTATCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 911236-909396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007223.1 Thermosipho sp. 1063 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 911235 30 100.0 38 .............................. GAATTTTCTCTTTCAACTTCTGAAAACCGTCAATAATT 911167 30 100.0 38 .............................. CCATGAAACTATCCGATAAATTTTCATCCAACCATTTC 911099 30 100.0 35 .............................. GGCCACCGCCATTACGACGGTGGCATTGGCGGCGA 911034 30 100.0 38 .............................. CTATATAATCTGTAAAAAACACCTTTATTTAAATTTAT 910966 30 100.0 34 .............................. TTATCGTTCTGTTGCTGATTGGCATATCTAAATA 910902 30 100.0 35 .............................. CGAAGGGGAATATTTTTATCACGTCCGTTATTTCA 910837 30 100.0 38 .............................. TATTGAACAGTAAATTTTTCTACAAATATCATAATAAT 910769 30 100.0 39 .............................. CGACTGATTTCTGCGTCTTTTTCAAAAACTTTAACTTCA 910700 30 100.0 39 .............................. AGCCATTTCCAAATTTTCTTTTCGATTTCTTTTCTCATG 910631 30 100.0 36 .............................. TATTAAAATCATCTATAATAGGAGCTTCCAAAATTT 910565 30 100.0 40 .............................. CGTCTTCCATATATTGTTTTAATATTTCTGATATTTTTTT 910495 30 100.0 40 .............................. TCTCTCCATTTTTGAGAACTGATTTGATCAAGCACATTTT 910425 30 100.0 36 .............................. CGTCTTCCATATATCGTTTCAATATTTCTGCAATTT 910359 30 100.0 34 .............................. CCATTTCTGAGAACCGATTTGATCCTCAAGCACA 910295 30 100.0 35 .............................. TATTATATTTATTATCTCAATCACGCCACCTTCGA 910230 30 100.0 40 .............................. TTTCTAAAAATAGACTTAATCTTTAAACCCATTCTATCAT 910160 30 100.0 35 .............................. ATATAACATTTGTTGCCTATTGCTAAATTGAATAA 910095 30 100.0 38 .............................. ATGAAAACATCTGATAAATTTTCATCCAACCATTTCCA 910027 30 100.0 35 .............................. CAATTCTTCCTGTCGCGCATATAATCGACTTAATA 909962 30 100.0 35 .............................. CAATTCTTCCTGTCGCGCATATAATCGACTTAATA 909897 30 100.0 36 .............................. TATGATGTTCCTTGCCAACGAAACCATATCCTACTA 909831 30 100.0 38 .............................. TCAATATTTTGACTTCCATGACATCCCCTCCTCTTTTT 909763 30 100.0 42 .............................. AAGAATCTCCCGAATATCATTTCGGAAGATCCTTAATTTTTC 909691 30 100.0 37 .............................. TTTTTATTTCTTATTACTTTAATTACCATATTTTCCC 909624 30 100.0 36 .............................. TAAAATCTTCAAATGTTTCTAAAAATTCTCTTTTTC 909558 30 100.0 33 .............................. TCTGTAAATTTTAAATCAGCTGCTATATACAAT 909495 30 100.0 40 .............................. GTGTGTGGTGTTAAATTAATAAATTTTGCCATAATATCAT 909425 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 28 30 100.0 37 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTGTCTTTCAACAATAATTTTTTCATTATTTTTAATTATATTAAGTTTCATTTTCTATGATTAATTATGTGTTTTATTTACGTGAAGAATGTTTAGTTAAATTATTATAATATCATAATTATATTATTTTATATTAAACACTGTATTTTCTTTTATTGAATAGAAAATATCATTCGTTATGAACAAAACATAAAATTACGTAATATAAAATAAAATAATATTTAATATAATTTGTTAATTATAAACAAATTAAAATAAATTAACTAATAGGTTTTCCGTTTACATAAATTCATACAAAATACATTGTTTAATAAAATATCAATTGTAACCAATTGTAACGTTTGGGTTAACACAAAAAATATAAGGAATATTCGATGACCTTTTCCGTTAACAAAAAAGCTTGTATATGGCTTAAAATAATGTGTTTACTTTCAGGTAACTTCTAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGATTTTTAATTG # Right flank : TTCATTGTGTGTGTGTACAAAAATCAAAGAAAATTATTAAAAAATCAAGTACAGAATAGAACAGATAATAGGAATAGTGAAAAACATATTCGGAGATAGAACTTTTTTATTTAAAATACCAAAACTGCGTGTATATGTAAGAATTATATTGTACAACTTGATAGAGTTATTCTAAATAATTTTTTATTTAATTTTGTGCAAGATACTTTATTATTCGAATGTATTTAGTTCATAGCTCTATATGCCTATTTGTTTTATATCTCTTTGTTTTTTGAACAGAATCTGAAATTAATTGACAATATCGCTTCTTTATATTAAAATAATAGAAAGAAAAAATTAACAGTTGGTGATATTATGAAAAAATTATCGACAAAAGAATATTTTACCTATTTTAAAAGTGAAAACTTTGTTTGGTGGTGGAACAGTGGCGATTGTCCACCACCTTTGTTGTGGTAAAAATATACTTGAGAGGACAATTGCCGGGCATTATCTGCCCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //