Array 1 1740-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBG01000020.1 Escherichia coli strain MOD1-EC6187 MOD1-EC6187_20_length_87380_cov_20.1512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1739 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1678 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1617 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1556 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1495 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1434 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1373 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1312 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1251 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1190 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1129 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1068 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1007 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 946 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 885 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 824 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 763 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 702 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 641 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 580 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 519 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 458 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 397 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 336 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 275 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 214 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 153 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82655-82076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBG01000014.1 Escherichia coli strain MOD1-EC6187 MOD1-EC6187_14_length_91217_cov_19.7415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82654 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 82593 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 82532 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 82471 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 82410 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 82349 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 82287 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 82226 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 82165 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 82104 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGGCTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //