Array 1 414651-415531 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYF01000002.1 Salmonella enterica subsp. enterica serovar Kottbus strain 02-0219 NODE_2_length_541497_cov_4.2023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 414651 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 414712 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 414773 29 96.6 32 .....................G....... TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 414834 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 414895 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 414956 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 415017 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 415078 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 415139 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 415200 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 415261 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 415322 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 415383 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 415444 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 415504 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 432078-433388 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYF01000002.1 Salmonella enterica subsp. enterica serovar Kottbus strain 02-0219 NODE_2_length_541497_cov_4.2023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 432078 29 100.0 32 ............................. TGCTCACTAACGAGCGCCAGCAGGTGACGCTC 432139 29 100.0 32 ............................. AATTCTGACTGTGATGATGCCGGAACGCTGAT 432200 29 100.0 32 ............................. GGTCGTCGAAACCACTTGTTATGACCGGCATT 432261 29 100.0 32 ............................. TGTGCTGGATAGTACCTACAGTAACTTTGTGG 432322 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 432383 29 100.0 32 ............................. TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG 432444 29 100.0 32 ............................. CCGATTTTCAAGATGCGCGTAACGGTCATTAT 432505 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 432566 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 432627 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 432688 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTAAC 432749 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 432810 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 432871 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 432932 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 432993 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 433054 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 433115 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 433176 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 433237 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 433298 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 433359 29 96.6 0 A............................ | A [433385] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGCCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //