Array 1 1796-466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQG01000021.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1509d x_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1795 30 100.0 36 .............................. CAATATTAAGCTCTTTATTTAACTCTTTTAATTTAC 1729 30 100.0 36 .............................. GCTACTCTTATGACCAAAAGGAGGAAATAGCAAACA 1663 30 100.0 34 .............................. CTACATACACGCCACCAAGCAAACAAAGCCTAGT 1599 30 100.0 39 .............................. AATCCAAAGTATGCAACAACCCGAAAACTATTTTAAATA 1530 30 100.0 36 .............................. TAGGTATTCCAAGCGTTTCAGAAAGAGGAGTTAGCG 1464 30 100.0 35 .............................. GATACCTGCTAGCGGAAGCACGACGGCAACATTTT 1399 30 100.0 35 .............................. AGTAAAAACTACATAGCTAAAGGTCATATTGAATA 1334 30 100.0 35 .............................. AGTAAAAACTACATAGCTAAAGGTCATATTGAATA 1269 30 100.0 34 .............................. TCGCAACTTCTGTATTGATAGCCACCAAATTTAT 1205 30 100.0 34 .............................. AGGGCTATTAAATATGTCGCGGATTTTGTATATC 1141 30 100.0 36 .............................. TGATATTTTTTTGTTTTGCAGCACTCCATCCATGTT 1075 30 100.0 35 .............................. TTCCAACCCTGCCTTAAAGCCGTCGATATTACTAT 1010 30 100.0 35 .............................. CTCGTACCCCCCCCCAAGAAGTGTAGGGGTTAGTA 945 30 100.0 33 .............................. AGGTTTTCCTGATTTGATGATATTTTTGCCAAA 882 30 100.0 36 .............................. TTATTCCAAATTTGCTTAGTATCCCAAACTCATCAG 816 30 100.0 34 .............................. CCTCTAGCTTAGAGCCTTTTTCGCCTATAAAGAT 752 30 100.0 36 .............................. TAAGGTTAGCTATGAAAAAAGGTATAGACTTAGCTC 686 30 100.0 35 .............................. GATGCTGATAGATGAAATAGATTAAAACTAGCACC 621 30 100.0 33 .............................. TTATATCTTTCAGGACGCTCTCACTAGCAAATT 558 30 100.0 33 .............................. CGTACTTCAAAGGGAAAATTGTAGGAAGCGGTA 495 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTGGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGCAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCATTTTCTATTTCTTTGTGGCAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1827-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQG01000016.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1509d x_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1826 30 96.7 37 ....A......................... CTTGTGCCAAAAGAAGAGCAAGAGCAAATGAGCTTTG 1759 30 100.0 36 .............................. TGTGGCAGTATGCTTTTGATTATTATTGCAAAAATA 1693 30 96.7 36 .......T...................... TTCTTCACGTTTAGCCCTTGCGTCTTCTAAAGCCTT 1627 30 100.0 36 .............................. AGTAAATTGCCTATCATTTCTTAACTTTCCTTTACT 1561 30 100.0 35 .............................. GACAAATATTTAGAGAAAAAGGATGGGGATGAACT 1496 30 100.0 37 .............................. TTCTTGCAAAATTGGTTACCAGGCATTGTTTCAAGCA 1429 30 100.0 36 .............................. CTTGCCCTTTTGAAAAGGATTCCTAATGCCAACCTA 1363 30 100.0 36 .............................. AAGAGAAGAGTTCATCTCAAGTGTTCTGTTCAGCAG 1297 30 100.0 35 .............................. CAATAGGGCTTATCCCATAGCCACCGCCAAAGGTA 1232 30 100.0 34 .............................. TAAGCACTCGTTTATAACTTCGACATTTACGCTA 1168 30 100.0 36 .............................. CTTGCCCTTTTGAAAAGGATTCCTAATGCCAACCTA 1102 30 100.0 34 .............................. CAAATTTAAAGGGAAAAAATGTTGAATGAATTTT 1038 30 100.0 35 .............................. GATAGATCCACTTATGCGGTATCAATATACTATGA 973 30 100.0 36 .............................. TTTTACAACAAGGCAGGAAAGAGGTAGAGGCTCAAC 907 30 100.0 36 .............................. AGATGGCAAAAATGAGATAAATAGCCATTACGAAAA 841 30 100.0 36 .............................. TTTTATTTGAGATTGTCTCTCTTTATTTTGATAGTG 775 30 100.0 35 .............................. CCAAAAGAGCCTTGAACATTATTTACAACAGAATC 710 30 100.0 35 .............................. TTTAAGCTTCATATATTTCACAACTTCTTGTTTTT 645 30 100.0 34 .............................. GAAACGGCATTTTATGGGTAGATTATACCATAAA 581 30 100.0 34 .............................. TTTTGCGCTTGTGAAATTGCCCAATTATTCCGTT 517 30 100.0 36 .............................. TCTATCATTTTTTAGCTCTCTATCAAATACAAAACA 451 30 100.0 34 .............................. CTTTCAAATATCCTTTTTAAGGGTATTTGAAAAA 387 30 100.0 35 .............................. GTCTATCTGCTCAGTTGTAGGCGTTTTGCCTAAAA 322 30 100.0 35 .............................. CTCTATGGTATTCACCTGCCTTTTTAAAGCTTCTT 257 30 100.0 36 .............................. TAAACTCTTCTCTTTGGCTCATTTATTATCCCCTAT 191 30 100.0 34 .............................. CCACCAAATAGCCCTGAGTATCTCTCAGCAGTGG 127 30 100.0 36 .............................. CAATATTAAGCTCTTTATTTAACTCTTTTAATTTAC 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.8 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GTGTGAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGGTAAGCTACAAATCCTAAAAATGTGAATTTTCTATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTACCAGTGTAAGGCTTTGAGTAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAGATCAACAAAACAGCCACTACCCTAAGCGATGTTTTGGATAAAAATATCAAAACAGCTACAACAGCGATAAAAAATGCAAATCACAAAA # Right flank : CGCTACTCTTATGACCAAAAGGAGGAAATAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 32-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQG01000022.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1509d x_contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32 30 100.0 36 .............................. GTAAATTAAAAGAGTTAAATAAAGAGCTTAATATTG 98 30 100.0 37 .............................. TTTGTATTAGTGGCATTGCTATCTTGCTCTGATATAT 165 30 100.0 36 .............................. TCCTTATTTAGTGGCGTTCCATTGCAAAGCTCTTTA 231 30 100.0 37 .............................. TACTCCCTTTTTTCATACCACTCCTCATTGCCAAATT 298 30 100.0 36 .............................. CGTAATTTGCACAACCCCTAGTAAAGCCTAAACGCC 364 30 100.0 34 .............................. ATAGGTATCCAGTCCGTATGCTCCGCCTTGTTTC 428 30 100.0 34 .............................. TTGATGTAGGATCTGTTAAACTTAAAGGAATTGC 492 30 100.0 35 .............................. TTTGTCCGTGGTCTAGTAGCTGGTTTTTTACCCAT 557 30 100.0 36 .............................. CATTTTCTTTTTGGATTAAAAAAACAAAATTGACCA 623 30 100.0 35 .............................. GCCGAAGTTGATACGACAATTATGACACAGTATCA 688 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 752 30 100.0 35 .............................. TATCTATACTTTTTTGATTAGAAAATCCATCAACG 817 30 100.0 35 .............................. GCTATCTTGAAAAAGGCTAAAAATTTATTTAGGTC 882 30 100.0 37 .............................. TGCTTGAAACAATGCCTGGTAACCAATTTTGCAAGAA 949 30 96.7 34 .............................T TAGAATGTTTATCAAAAAAACAGATGGATATATT 1013 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 1079 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : GCTATTTCCTCCTTTTGGTCATAAGAGTAGCG # Right flank : TAGGTTGGCATTAGGAATCCTTTTCAAAAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //