Array 1 256965-255834 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXZ01000141.1 Pseudoalteromonas luteoviolacea H33 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 256964 29 96.6 32 ..G.......................... CATCTGCCAACGCAGGTTTGCTTTTAGCCACT 256903 29 96.6 33 ..G.......................... GCTGGTAACTTGTGAACTTTTCATAATATTTTC 256841 29 96.6 32 ..G.......................... GTACTATTTTATTTTGGCTGTCTCAAGATGTA 256780 29 96.6 33 ..G.......................... GCTTGTGATCACGGGTTGGCTGTTTAATCCATC 256718 29 96.6 32 ..G.......................... AACTTGCGCCGGAATATGATTTTGATATGAGT 256657 29 100.0 32 ............................. CAAACTGGCAACCAGTTTTTCGTAGAATGACC 256596 29 96.6 32 ............................A TTCCAATGATTCTTCATAGCTTTTTTGAGTTC 256535 29 100.0 32 ............................. CTGTAGCACAAAATGAGGCCTACAAATCGTCT 256474 29 100.0 32 ............................. GTGTAACAATGCGAGTGACGTGCCCACACTGC 256413 29 100.0 32 ............................. AAACCGTTATTGATGTGCGCGTAGGATACGAT 256352 29 100.0 32 ............................. CGCCTAATTGAGTTAGGCCAAGAACGAAAAGC 256291 29 100.0 33 ............................. TTTAAAGAACTAGCTGAGTTCGCGACCCCAGAC 256229 29 100.0 33 ............................. GGTAATCACTGGCATTATAACCATGACTTATGC 256167 29 100.0 32 ............................. CTATTCGGATGATCTGATAGAAATGTTAGGCC 256106 29 100.0 32 ............................. CTATTCGGATGATCTGATAGAAATGTTAGGCC 256045 29 100.0 32 ............................. CACGGACAATTTCGCGGTATTGAACAGCCATT 255984 29 100.0 32 ............................. CCAGGGTCGATACCTACTGGCACCTCGTGTAC 255923 29 96.6 32 ..........C.................. TGACAACAAACTCCCTGCCATCGTTTGTTAGA 255862 29 82.8 0 A.G.........CA............T.. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.8 32 GTCTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CGTATGAAGATGCGCAACCTCCAGCAATACCTGAACCAGAATCTATTGGTGACGATGGCCATCGCAGCGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAAGCAGTACCGCCTAGGTTGAGAGGAAGGCTCGCTGTATGGCTGTTGGAAATCAGAGCGGGCGTATATGTGGGCGATATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGTGAGTTAGCCGAAAATGGTAATGTAGTAATGGCATGGGCAACTAATACTGAGTCCGGCTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGACTGAGATTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAAACCTCATATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : AATCTCAGGACTATGGTGCCAATACGTCCATGCGTGTTCCCCGTATGCACGATATTTATCAGGATGACGAGGGTTCTCTTGGTGTGTTGGTTTTATTTAAGTGCTCCCTTGGCCGTCTTCCCGGGCTTGCCCCGGGATCCATATATGGGTGTTTCGCTGCAATCGATATTTACCAACCCGCGAAAACTGTAATGGGGGTTTCCACTTTGGCATCCTTTGATGCAGCTTGTCACCTTTTGCATGTTGAGTGTCACGATCTGTCAGTGTGTGGCGCGTTTTGAATGCTTATACTGAGCACATTGAATCAACGGGGTTTAAACAGAGGTAAAACACATGGCAAATACAGCATTAATCACAGGCGCATCGGGCGGTATTGGACTTGAATTAGCACACTTGCATGCACAGCAAGGGGGTGACTTAGTCTTGGTAGCGCGCTCTCAAGATAAGTTGGATGCCTTGGCAAAAGAGCTTGAGGTTAAGCACAGTATTAAAACGACCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1488-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXZ01000131.1 Pseudoalteromonas luteoviolacea H33 contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 1487 28 100.0 32 ............................ TGTTAGAGCGTTTTTGCATTCTAACTCCTGTA 1427 28 100.0 32 ............................ AGACAGCATTCTGAGCGCAGGCGGCGCTGATT 1367 28 100.0 32 ............................ TGAAGGTTTTGAGCATGTTGGTGCTGTACTAC 1307 28 100.0 32 ............................ TATCCAGTTCATACCAAGTGTGTACGCATTCC 1247 28 100.0 32 ............................ CAAACCCTCGTTTTGGGTCATATTGCGTATCA 1187 28 100.0 32 ............................ CCTTGCGCTATAGATACAGTAGGACTTGAGAA 1127 28 100.0 32 ............................ CTAACGTTCGCAACGCTCTGATTGTCGTCAAT 1067 28 100.0 32 ............................ TTGCCGCCTTAAGCTCTGTAGCTTCTGCTAAT 1007 28 100.0 32 ............................ AAATATCGTGGAGAAAATTGCGTCTGCACAGC 947 28 100.0 32 ............................ AATCACCATGCTCACATTTCTAACACTCATTG 887 28 100.0 32 ............................ TTTGCAAGTGGCTGCAGACTTTGAAGCACAGA 827 28 100.0 32 ............................ TAATTATCAGCGTAGTCATGTGCACTTTCAAA 767 28 100.0 32 ............................ ATGCGGGAGATTATTTGCTCACCATTCGGCCC 707 28 100.0 32 ............................ TACCTGAAAATAAGCAAACTTATAACCCGCTT 647 28 100.0 32 ............................ AAAAAGAAAAGGCGCGACAACCTGAAGAGTTG 587 28 100.0 32 ............................ ACAAAACACAGGGGTTAGCTCTCAATTATTCA 527 28 100.0 32 ............................ GAGTAAATACCACGCTAACAGCCCAAAATATA 467 28 100.0 32 ............................ AGTGTGATTCCCACACATCGACACTTAAAGCC 407 28 100.0 32 ............................ TAAAAAAGCTCGTAGTGTGGTAGTGGTATATA 347 28 100.0 32 ............................ TGATGGTTTATACGGCTCTCAATCACTACCCA 287 28 100.0 32 ............................ AGCTTGCAAATGTTTATGTTCAGTATCAAAAG 227 28 100.0 32 ............................ TGTTGACGATTGAACAGCAAGTTGAACAAAGC 167 28 85.7 106 ...........C.............GTG ATGAGTGACCGAAACGCAGTTTCGCAGCGCGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGACGGATTACAGCTCCGTATTGGAACTATTCCG 33 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 24 28 99.0 35 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CAAGGAGAAATCATGAAAAAACTATTACTTACAGCGGTGAGCTGTTTAGCAATGAGTGCTGCAGTTATTGCAGCAGATACGCAATCGACTACTGCTAATCAAACGTTAACGGTTGATGGTGTGACAGCAGCTACTTACCCAGCTCAGCCAACCATTTTAGACCAACTAACCCCATCAAATGCGTGTGAAGCGCGCTGTCAAAGTCACTACGAGGCGTGCGTGAAGTGGGCGCCACCTTGGACAAACTGTAATGATTTTATTAGACGTTGTATGAACAACTGTTCTAGATAAATCCATCTATATAAAAAATGGGAAATATAAAAGGCCAGTAGAATGGCCTTTTTTGTGCGCCAAATAATGAGCAAAAATACCTTTTATTTTTTGCTCATTAACAGAGGTTTTAAAATCAATAAGTTACAAGCGTTCTAAAAAAATAAGGTATTTTCCACATTATTTAGCTAGGTGTTTGTATTTATGAGTTTTTGTGTTAAAAACCTATA # Right flank : GATGAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //