Array 1 687445-688987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065919.1 Staphylococcus pseudintermedius strain SP_11306-4A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 687445 36 100.0 30 .................................... GCAGAAAAACCCTTTGTCAGTTATGGGAGC 687511 36 100.0 29 .................................... GACAATTGCATCATCGTTGTCATCTGAAG 687576 36 100.0 30 .................................... ACAGCGATAACAAAAAGCTTTATGTCATGT 687642 36 100.0 30 .................................... ACAATTTATCGCTTTAATCGGTGGCTTTGT 687708 36 100.0 29 .................................... AATTAGTTGAAGCGGGTATGTCAGATAAA 687773 36 100.0 29 .................................... CTAAATGCGTCTTGCTACTCACACCACTG 687838 36 100.0 29 .................................... TATAGCAAGGCATAAAAAGTGGATGTAAA 687903 36 100.0 30 .................................... ATTTACATTTAAACGATTTATTCGGTCGCG 687969 36 100.0 29 .................................... TTTAATGTTGCAAGATGATTTTCCAGAAG 688034 36 100.0 30 .................................... TTGGTTTTCGGACAGTTTAGTGTCTGTGAC 688100 36 100.0 29 .................................... TACTTTAATCTGGAAAGACGGGGAGATGG 688165 36 100.0 29 .................................... TAAAGTCGTTAATAAACATACCTGAAGAA 688230 36 100.0 29 .................................... ATGTCATCGTTTAGTATGTGGAATGCTCT 688295 36 100.0 30 .................................... TTTAACTAAAACTGGTTATACGACTGAGCG 688361 36 100.0 30 .................................... AAGCGCTCAGAACAACGCATTAAAGACCTT 688427 36 100.0 29 .................................... AATCGAATCTTGTTTTGGTCGACTATTCC 688492 36 100.0 30 .................................... GGTATCCAATATTTGCGCCTACAACATTAT 688558 36 100.0 29 .................................... AGCAAAACGGTTCAAACGTTGGGTAACGT 688623 36 97.2 29 ............................A....... TAAAATCGTGGCACATTTTATTAAGTAAC 688688 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 688753 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 688819 36 94.4 30 ...........T................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 688885 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 688951 35 83.3 0 T........T................-.CA.C.... | TC [688983] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 98.6 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTGATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //