Array 1 61319-62445 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJR01000009.1 Escherichia coli strain EC_16 NODE_9_length_181997_cov_19.616612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61319 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 61380 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 61441 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 61502 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 61563 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 61624 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 61685 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 61746 29 96.6 32 ..................T.......... AGACGGCGCGTAAAACTCATACGGCGACAAAT 61807 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 61868 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 61929 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 61990 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 62051 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 62112 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 62173 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 62234 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 62295 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 62356 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 62417 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88145-88907 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJR01000009.1 Escherichia coli strain EC_16 NODE_9_length_181997_cov_19.616612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 88145 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 88206 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 88267 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 88328 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 88389 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 88450 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 88511 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 88572 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 88633 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 88696 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 88757 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 88818 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 88879 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //