Array 1 787-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811008.1 Actinomyces sp. HMSC075C01 Scaffold747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 786 29 100.0 33 ............................. TCCAATTCCCAGCACGCGCTCACGGAGGTCATC 724 29 96.6 32 ............................C TACCTCACGTTTGAGGGCTACATCCTCGACGT 663 29 96.6 32 ............................C GATCATCCTGGTGGGCCATCATGTGAGCGGAC 602 29 100.0 32 ............................. TGCGTTGCCGGCTGGCTGGAGTTGGAGGAAGC 541 29 96.6 32 ............................C CGATGACGTTGACATGGAAGACCTCTCCGCTG 480 29 100.0 32 ............................. GAAAGCGGCGCTGCGGAACATGGCACGCTCCG 419 29 100.0 32 ............................. TCGAACTCGGTGTTCGTCAGCCTAGCCCTCGC 358 29 96.6 32 ............................T GTCCTGCCTCCCATTATACTGATGAATGTAGG 297 29 100.0 33 ............................. ACCTACGGGGCAAAGAAAATCGCGATCACCAAC 235 29 96.6 32 ............................C GACGACCCGATCGACAGCGCTGACCTGACGCC 174 29 100.0 32 ............................. GCGAGGTGTTGGCTGTGCAGTGCGCGCGGTCC 113 29 96.6 32 ............................C AGGTACACCCACCAGTACTCAGACCTTGAAGA 52 29 82.8 0 ....................TGG.G.G.. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : TCATATTCACCTACACCCCATGAATAAGCCTCATAGTCCTGAAATCGTCG # Right flank : GTGGTGTTTCTCGGACTGGGGGAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811011.1 Actinomyces sp. HMSC075C01 Scaffold768, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1 33 89.2 35 ----................................. CGGCACCCAGCACAGGTCGCCAGGCACCATCACGA 69 37 100.0 35 ..................................... AGGATCGGGCTAACACCCCTGAATCCATGCTTGTC 141 37 100.0 37 ..................................... GGAATATCGAGCGAGTTTGAATGTACCTTGGCGCCGA 215 37 100.0 36 ..................................... GCTGATGTTGGATCCAGCAACCCCAAGGAAAGTTCC 288 37 100.0 38 ..................................... GCCAGGATCACCTCCTGTTCCAGGTCCTCTCTTTCCTC 363 37 97.3 37 ..........A.......................... GTGAAGACCTCGTCCTCCTTCTTGTTCCCCTTGATGT 437 37 86.5 37 .C.......AA..TC...................... CAGAATCACCGCTCAGACCATGCTGGCGCTCCCTCTC G [445] 512 37 86.5 0 ..........ATT..................G...G. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 94.9 37 GTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGAC # Left flank : | # Right flank : CATATATCGACACGTGCCGGGAGATCGCATGCCGATCTTCTCCCTTGCCCGCCAGAATCTCGATATCCTGTCCTCCAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCAATGATGCGTCCAGCCCAGCCATCACCACCACTATCAACGACACCGCCATCCCCACCTCGCCCGCACCGTCGTCGCCGTCGTTCCGATCGCGCGAAACCGGGCCAGCACCTCGGGGAGGACATTCACCCGCTCCAGCACGCAGCAGGATTTACGTCGTCCGAGGCGGCCACCGGCACCCTGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGGAGGCTGGCGCATGGTCCTCGCCAAGGACGCCTCCGACGGCATCCTGCAGCGCAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAACCTGACCCGCTCCTGAGCTTCGGCATCCCCAAGGGCACCTCCG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 76707-78748 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810972.1 Actinomyces sp. HMSC075C01 Scaffold461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76707 29 96.6 32 ............................G GGTCTGGTCAAGAAGAGGGTGTCCGCTGACGG 76768 29 96.6 32 ............................G GGACTGGCCCTGAAAGGCGCTCAGAATGGCTT 76829 29 100.0 32 ............................. GCGTGCGCCGCCGAAGTCGGATACAGCCGCTG 76890 29 96.6 32 ............................G CACATTCGTATAGCAGAGGACTCGTATCCGTA 76951 29 96.6 32 ............................A AGAATCAGGTCCTCAGGCTTAGCCGAGACAGG 77012 29 100.0 32 ............................. ACCGAGTTCGACTTCGTGCGCCAGCTGGAATG 77073 29 100.0 32 ............................. ACGTAGGTACCGAAACGGTTAATGGATTTGTG 77134 29 96.6 32 ............................A GGAGTCCTTGACCCGCGTGGACTCGGTGGCGG 77195 29 96.6 32 ............................G AACCACGACACCGCCGGGGTGTCCACTCCTGG 77256 29 96.6 32 ............................T GCGCTTATGGTAGTCAAGAGACGCGTCATTGC 77317 29 96.6 32 ............................G AAATCCCATTAATCTCCCTTTCTGTGCACAAA 77378 29 100.0 32 ............................. GCGTTGGCCGTGCTCTTCAACGTCTCCTACGC 77439 29 100.0 32 ............................. GTCGTCAGCCAGGCCCAGACCAATGATTTGAG 77500 29 100.0 32 ............................. GGCAACCACTACTCGGCCCGCTGGTCGTGGAG 77561 29 96.6 32 ............................G CCGGCCCGAGGGGGCAACGCCTACCGCGGCGC 77622 29 100.0 32 ............................. ACGGCCGTGTCGGTCATGATGTCGAGTGCCTG 77683 29 96.6 32 ............................G TCATCGGGAGGGCACAGGAGCCCAACCCAATC 77744 29 96.6 32 ............................G TGAGAGAAACGTCATAGGCGGTGGCGGCATAG 77805 29 96.6 32 ............................G CGGGAGAGCTTCTCCAGAGTCACGGGGTGATC 77866 29 100.0 32 ............................. CCAGGATCGTCCTAGCGCGCCTCATGGAGGCG 77927 29 96.6 32 ............................T GGGCGCATTTATTACCGCATATGCCCGAAAGG 77988 29 100.0 32 ............................. GACATCTACATCATGGCGCAAGCGATGCGCGT 78049 29 100.0 32 ............................. GGCTTAATGTACACATCCTGGTACTTGCTCTG 78110 29 96.6 32 ............................G ATCGCGTCGAGCTCGTCGTCGCTGACGCGACT 78171 29 100.0 32 ............................. GGCCAGGAGACCTGCCCGGTCGGCTTGCGTGT 78232 29 100.0 32 ............................. GACTTCCAGGATTGGGCGTATGAGGCCATGGG 78293 29 100.0 32 ............................. TGCTCCGTGAACTCCTCTGGTGAGATAAACTG 78354 29 100.0 32 ............................. CTCACCCAGACCACTGTGGTGGCCGGGACCGG 78415 29 100.0 32 ............................. GGCTCGACGCCTCAGACTATGACTTTGAGGCA 78476 29 96.6 32 ............................G GCCGGCTCTACCGTGTTCGCGCGCGTCGAGGT 78537 29 96.6 32 ............................G GTCGGCAACCTTCAGGACGTGCTAGTCTCTCT 78598 29 100.0 32 ............................. GAGAGGGACAAGAAGGGTGACGGCAGCCGCGA 78659 29 100.0 32 ............................. CGCGGCGCTGTTCTCTGACGGCAGCAGGAAGA 78720 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.3 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAATTACGCCGGAGAGGACGCAGGGGGATGGTAGTCCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCTATGACCCGCTGGCTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCATACATCGGGGAGGGACGGGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGC # Right flank : GTCCCACCAACCCATAGAGGCTTATTCATAGGGGTGTTTGGGGTGTTTTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35655-34589 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810964.1 Actinomyces sp. HMSC075C01 Scaffold435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 35654 27 100.0 35 ........................... CGTGTACATCACTGTACCGGCGTATGTACAGTGGC 35592 27 100.0 34 ........................... CGGACCCGAAGACGACGATCCTCTGCTCGTCCTC 35531 27 100.0 34 ........................... CACAGTAATGGTCTGACCGTTATTAGCATTGACC 35470 27 100.0 34 ........................... CTGCTGTTTGATCTTAGTGTTCAACTCCTTACGG 35409 27 100.0 34 ........................... CCGCGGACTGCTCGTCCCTGGCCTGCGGGTCGAT 35348 27 100.0 34 ........................... CCTTTATCAACGGGGGCGGGGCCCTTCCAGGACG 35287 27 100.0 34 ........................... CGACGTGCTTGCGGGCCTGCCTCACGCCCGCCTC 35226 27 100.0 34 ........................... CGCCAAGTACGTTGTCGGCATTCACTGCCATTGG 35165 27 100.0 34 ........................... GGCGGGTCGGCACTGGTGCGGTGGTTGGTAGTGC 35104 27 100.0 34 ........................... GCGCATTCAGGGACGTCACCGCCCCCATGATGGC 35043 27 100.0 34 ........................... GGTACCCGTCACTGTTCGTCACTCGTCAGATGGC 34982 27 100.0 34 ........................... GGACGATCCGCATACGGGTGCGGGCATCCCCGGT 34921 27 92.6 34 ........A.....C............ GGGTGAAGGTGGAGAAGGCGCTGCGCCTGTACCG 34860 27 96.3 34 ..............C............ GGATGGTGGCCGCTCCGAGTGGGATGATCGACCT 34799 27 96.3 35 .......................G... GCGGCACCAACATGCTGGACTGGTGGCCGAGGAGC 34737 27 88.9 34 ..T..........TC............ GGGCGGCCTCATGCAACCGGGCTTCTGACTCAAC 34676 27 92.6 34 ..T.............T.......... GCATCGTCTCGTCCGCGCCCAGCAGTAGCAGCGC 34615 27 77.8 0 .C........T...C........CT.C | ========== ====== ====== ====== =========================== =================================== ================== 18 27 96.9 34 GTCAGCCCCGCGCATGCGGGGGTAGAG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGTTGGGCCGCCGTCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCTGGGGGGCTTCGGCTTCCGTCCGTGGGACTCGCGGTAAGGACGGGGGTGGTTGAGGCCAGACTCGCCGAGACAAGGACATTGGCTTCCCTGCCTCGAGTTCTGCGGGCCGCTACCGTTCCTTCATTGCAATGGACCACTGTTGTGCCGACGGCGGAGGAGCCTGAAGGCATCATGGACATACTCGAGGAATGCGCCTCGGGGCTCGGCTGCAGACTCGTTGCGGCTGAGCGTCACTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGCAAGACAACGAGCGCTGGCACGTCTCGGTCGCCTTCGACGCGAAGGTACCCGGGCCGGTGGTCTTCGACGGCACCCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCACGGCGACCCCGAGCCGACTAGCATCGCAGGTCAGCAAGT # Right flank : ATCGACATGCGGTTGACGCTGCCTGGGCCCGGTCAGCTGCCCAGGGCGCCTACTGCACGAGGGTCGGGTGCTACTGGAAGAGGGTTGGGGCTACTTCGCGGGGGTCGGGGGTTCGTGCAGTACGCACAACCTTCGGCCAGTAGATCCCCACCCTCGTGGAGTGGGCCGGCTCGAGGACGGCGCCAGGGCTGAGCCGACGTCGAGCCGCCGCCGGGAAGCTGCGCGGGAACCAGGCGGCAACCACAAAGGGCCCGGTCAGAGGTCAGGCCGGCGGAAGGCGGGGCCGGCCCCTGGGGTGAGGGCGCCCGGCGCCACCGCTAAGACCTCGCCAGACCTCGCGGAGTCGAGCACGTCAGCAGCTCAGTGTCCACGGTGCTGACATCAACGGTGCCGCCGTCGGAACGCCCAGCGGAATCGTTGTAATTCCAAGGCTCCGTCTCGGCTCGCGACGCCGGTGCCGGGTTGATGTCAGCGTCATGGACACAGGCGTCCCACCAGGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCATGCGGGGGTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 19-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810991.1 Actinomyces sp. HMSC075C01 Scaffold567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 32 ................G............ ACCGTCAGCCGGTGGGAGGCCGGATCCCGCAC 80 29 89.7 32 ......T.....T...............G GTGTCCGCTGGCATCATGATGACGTCTCCTTG 141 29 96.6 32 ......T...................... AACGCCAAGTTGATGGCTCACGCTGCTAACCT 202 29 100.0 32 ............................. CCCGAGGAGATGGCGGCCCGGCTCAAGGAGCT 263 29 93.1 0 ............T...............A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GAAGGACCTCACCGAGTAG # Right flank : AAGAGCACTTGCCCGAGGAGGGGGAGGGCCCTGTGAACCCTGCGCGGGTGGGAGAGTGGGAGAACGGCCTGTGTGCTTGAGGGGGAGTGACCGGCTCATGAGTCCGGGGGGTGCTTGGGCCGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTCCGTTGTGGCGGACCCGGCTGTGAAGGAGCCCACCGCCACCGTCGAGAAGGTTACCGAGACGGCCACGGGGCGGGCGAGGCCTGACTCAACACGCTCAGTCGATTAACTTTACAAATACATCTGGCGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGCCGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCAAA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //