Array 1 331163-330548 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 331162 25 100.0 42 ......................... CAGAATACTATATGGAAAACCCATTAGAAATATCACGGACAA 331095 25 100.0 40 ......................... AACATTTACAGTTTAAAATTTGGGTTTTCCCATGTCTTAA 331030 25 100.0 40 ......................... TTCCTAACATATTCAACGATCTCTTTCTGGGTAATCATTG 330965 25 100.0 42 ......................... GTAACTGTATAATAAACGGTCTTAAATCGGGAACAAATATAC 330898 25 100.0 39 ......................... CTCTAAGCCCCGTGTCTGCCCCCCGTTACTCGAGGCGGG 330834 25 100.0 43 ......................... TAATATTCTTCGTTATCCATGTTGATAGCATTAGTAGAGCCAT 330766 25 100.0 40 ......................... TTTCGTTCCCCAAGTTCTATATTTAAGATTTATTCCGAGA 330701 25 100.0 40 ......................... CAAAGATACCTGTTAGAGTGCTAGGACGTAGCAGAGTTGG 330636 25 96.0 39 .........C............... CTACGTCTAGACCAGCAAACAGTTGATTTATATGATTCC 330572 25 88.0 0 ......C...TA............. | ========== ====== ====== ====== ========================= =========================================== ================== 10 25 98.4 41 GTAACAACATAGAAAGAATTGAAAG # Left flank : AAAAACCACATAGAAAACTAAAAGAAACAATAAAAACACCAATACCACCAGTACTGTTAAAACTAGAAAAAACACTTACAAAAACACAGCGAATCCTAGGAATAAAACAAACAAAACAACCAACAATATTCCGAATAGAACCAAACACAGAAATAACAGAATACCATAAAGCAAAAGAAACAAACCTAAAACAAATAATAGGAAAACAACTAATAATACAAGACTACTACGCAGGACACCTACTCCTAGAAGAAACAAACACAAACACAAAATACCTACTAAAAACAAACCAAATACTACACAAACCAAGCATAAAAACAACCTAAACCCAAAAGAAAATCACTCGAATATTTTTCATTATACAAACCCGTCAATACCTTAAAGATACTATTAAGTCTATAGAAAACTGGTCGAACACGATCAATCTAGGAATTAAATATAGAAAGAAATATATAGTGGTTCGAACAAAAAAGATAAATGTAACACGTATTCGAACTAAT # Right flank : CTGTATTCTTGAATGCTGATCTCCCTCTGTAAATATAGTAATAGAAGTATTAATCCATAATTATAGCTATAAAAAGTTCTTTAACGCTTCTATAAATATTACCATATTTTAGTATTGTCTTCTCAACATCTTTATCCACCACATATTGACCATATAAGCATCCAACTTCTCCGAAAATATACCGATAGGCTTCGTGTAGTGGATACGTGTTTTCCTAATAAGATTTATTCTTAAACATGGGATATCAGGATCAGCTCTTTCCCTTTTAATGAATAGTCACGGATAAGGATCAGGATCGACCATGTAAAATTTGATCTCCTTAACATTGCTGAGTAGAATATATGTTCTTATAACGGAAACTAGTGTTCTATAGGTTAGTGTTGGCACATAGTTTATTCCATGAGTAGTATCTAGTATTACCGTGTCAGGTTTAAGTTTAATAGGATATGGTAGTTTCTAGGATTATCACTATAATCAGCCTCAACACTCTTACACTAAAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 333484-332546 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 333483 25 100.0 38 ......................... TATGCATAAAAAAATAGTTCAATGGCTTGAATGGCTTG 333420 25 100.0 39 ......................... CTATACCATACAGCACCAATGGCCCGTTCACCAGATGGT 333356 25 100.0 40 ......................... TATTTTTTCTTGCTTCTTATCCTCACTCTTATTTATATTA 333291 25 100.0 40 ......................... ATACATGGGCTGGAAACGTCTAGCCGAAATACTTCAAATG 333226 25 100.0 43 ......................... ATTGAGTTACTAAGTCGTAAACCTGTTCCCTAGGTAACTCTAA 333158 25 100.0 40 ......................... AGACACACAAAAAAACACAACAACAACCCACAACACAACA 333093 25 100.0 40 ......................... GTAGCCATAGCCTTGAGGCTAACCTTGATCTTGCCCCCTA 333028 25 100.0 39 ......................... TTCCAGCTCCAATCGGCTCTGTATTTTATTACAATCCAT 332964 25 100.0 40 ......................... CACTCTTAAACTCTTTACCGCATATTGGACAAGTGTATTT 332899 25 100.0 42 ......................... ATATTTCCCTCTCGTATTCTTCAATAACTTCGATCGGTGTAT 332832 25 100.0 43 ......................... ATTGAGTTACTAAGTCGTAAACCTGTTCCCTAGGTAACTCTAA 332764 25 100.0 39 ......................... AGCATATCACGTTTTTGCAGAAACAAATTAGGAGTCAAT 332700 25 100.0 40 ......................... CTCGACAATCATGCTTAGAGAGTTCACGCAGTATTTTCTC 332635 25 100.0 40 ......................... TAACGGGTTCTCCTCCCATAGATCAAAATAGAAGTGATAG 332570 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 15 25 100.0 40 GTAACAACATAGAAAGAATTGAAAG # Left flank : CTAACACTACCACCACTCCTAGCATGAACAAATAATGCAACAGGCCTACCAGTATAAGAAGTTACCAAAACATCAATGCCCGAATCAGCAAGAAGCTTCAACAACTCAGTACTAATACCAGCCTTACCAGAAATAATAACCTCACGAACCCTCCTAACAGGAAACTCCTCCCTACCACCCCTAGAAACAACAACAATCCTACCATGCTTCTTACGAAGAAAAACACCATAATCATCAACAACCAAGTGACCCCAATCAGTCAAAAACACCAAAACCAGCCACCAAATAAAAAATAGTATAGAAAAATATAGAAACTTTACCCATAAAACTAATGGAAACTAGTCGAATGTTTTTCATTATACAAACCCGTCAATACCTCAAAGATACTATTAAGTCTATAGAAAACTGGTCGAACACGATCAATCTAGGAATTAAATATAGAAAGAAATATATAGTGGTTCGAACAAAAAAGATAAATGTAACAACATATTCGAACCAAA # Right flank : CGATAGTTCTTATACGTATCATATTCTTCTAGTTTGTTGGTATTCGAATAATGAATATGAAAGGTAAATATTTATCCTGTAAATGGCTGGTCAATTATATGGAACTATTAAGAAAAGGATCAATGGTTTCTTTGTATTGGAAAATAGTGTCCCGGATTCTAATGGAATTATTAGCTTCGTGAAGCGATGTGTTTTCTGAAATATTTAATGTATAATTATTATTCCTTAATATAGGTGAGGAAATTTATGGATTTATGGGGGGAGGGATATGTTTTGATACCTAGGCTTTTCTATTTTGATACGAGGTTTTATTCTAAGGAGTATGTTAGAGTTTCTGGGTTGGATATGTTTATGGGTTTGGAGATGGGTAGGGAGCTTGTTAGGTATAAGCTTGTATTTTATGGTTTAATTGCTCAGGAGGAGGGTTCGCATATACTACACTTAATTGTTCCCGGCGAGAAAATTATGTTTGTGGAGAACTATGTAGAGTATTGTCGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 336667-337597 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 336667 25 100.0 39 ......................... CCTCATAAAAACAATGTCTTAAAAAACAATTATATTTAA 336731 25 100.0 40 ......................... CTCAGCAATCAGCTTATTATCTCTATAAACCCTGATATTG 336796 25 100.0 40 ......................... TTCTTTTCTTGAGGGCTTCTCTAAGGGTTTCGGCTACTAT 336861 25 100.0 42 ......................... TAGGCGAGGACGACATGGTTAGGTGGAGAGCGAGAACCCGTT 336928 25 100.0 39 ......................... TCCCCCGCCACACCACGCACACAAAACATGCATGCAAAA 336992 25 100.0 40 ......................... TTGTAGAATAGCCTGGGCTACTGCCTCTACCTTCTCTTTA 337057 25 100.0 38 ......................... TTTATCCCCACAAACCTTAGCAGTATATCGTATAACTG 337120 25 100.0 39 ......................... CGGACTCGGTTTTGCCAGCGATATCGGGGTAGCGGATGT 337184 25 100.0 39 ......................... GTCCATAAATTTGTGGAGCATACTCTACTAGCATTTCAT 337248 25 100.0 41 ......................... AAGATTAATGGAATTGCAACGCTTATTAATGCTATTATTAG 337314 25 100.0 40 ......................... CTGCCGTATCAAGCTTCGGCACAATTTTTGTCCTAAATAT 337379 25 100.0 41 ......................... TTAGAGACCTATGCGTCCTAATAGAGGTATTGCTCTCCTAG 337445 25 100.0 37 ......................... ATAGGAACCGCTCTGTGGCATGCGTTTATAGAAATTG 337507 25 100.0 41 ......................... AGAGATACAGCGAGATAGATTATACGCCGACAATTGACCAA 337573 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 15 25 100.0 40 GTAGCAACATAGAAAGAATTGAAAG # Left flank : TAGACTACATAGTAAAATATAGAGGAACATATACACCACTAGAAATAAAGTATAGTAGAAAACTAAAACCCTGGTGGAAATATACATTAACAACATATGCACTCCTAGTAGAAGAAACCTACTATAAACCTGTAAAAAACGCAATCCTAATAATGCCAGGACCAAAAACAACAATAATCAATATTACAAGCAACGATAGAAACTACATAATAAAAACACTAGAAAACATGAAGAAAACACTCGAAGAACAAACAACACCAAAACCAACACCTTCAAAATCATGCATCAACTGCGACTACAAAAACATATGCCCATACCAAACAAAAAACCAATAGAAATGTGGTCGAATGTTTTTCATTATACAAACCCATCAATACCTCAAAGATACTATTAAGTCTATAGAAAACCAGTCGAACACGATCAATTAGGGATCAAATATAGAAAAACATATATAACAATTCGAACAGATTAAATAAATGTAACAACGTATTCGAACCAAA # Right flank : GATTATTTGGGGTTCCTTATGTTTGTTGGGTTTTTATTTCTATATGTCCTAGTCCTATTGCTCTGCTTGATCCTGCTCCCATTATTTGTGCGTGGCTTAGTATGTTTTCTATTAGTAGTTTTTCTTTTTTGCTAGTGTTTTCTTTGTTTATCCAGTATTTTACGTATCCTGTTAGTGCTGGTATTGTTTTTTGTTCGTATAGTACTTCTACTTGCTTAACCGTTTTCCAATATGTTTTGCTTTCTATGAGTACATAGTTTATTATGTCTAGTATTCTCCAGTATTCCGGTCCTCTTTTATACATCTTGGTTATTTCTCCAGCATTATAGCTGAAAAGTATTCCAGGTAATATGTTTAGTCTCTTATACTTTGATTTTCTATATGGATCTATTGGTTGTACAGGTGTTCTAAACATCACTTTTACTGAATCAGTATTGTCTAGTTTTATTGGGGGGTTATTGTTTGGCAACTTATATGTTTTAACATCTAGGTCTGTGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 350840-351179 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 350840 25 100.0 40 ......................... CGCTGGAGACTGGGTCTATGTGATACTGTGGAGATCTCCC 350905 25 100.0 40 ......................... AGCTAGGGGGGATATAGCACCAGATACTCCTATATCCTCA 350970 25 100.0 39 ......................... ATTATATATATTGTTTGGTATACATTTACTATTTTTAAT 351034 25 100.0 41 ......................... TCGAACCATATAGACATTCTCCCATTCGCACTAACTGTAAA 351100 25 96.0 30 .........C............... CATTGCAGTTATCGCATTGAGCACTTACTG Deletion [351155] 351155 25 92.0 0 ..........TA............. | ========== ====== ====== ====== ========================= ========================================= ================== 6 25 98.0 38 GTAACAACATAGAAAGAATTGAAAG # Left flank : GCAAAAGTATTCCCCAACGGGAAACCAATAACAGTAGCCAACCTAATCGTATTACCAGCAATCTCACGAGCCTTCAACAATAAACTAGGCGGAAGCATTAACACTGCAAAACCATACCTCCTAGTATCCTCAACATATTTCTCCAACAACTTATAATCAGCATAAGGCTTCAACAAAGTATGATCAATCATAGAAGCAAACTCCTTAACACTAAGCTTCTCAACAAGCGAACCAACACCCATAACACACCACCCCATAACTATAAAATATAGCATCAAAACATATAAAACCACACCAAACACAAAACCAAGAAAAAAACACATACAAAACCAATGGAAACTGGTCGAATATTTTTCATTATACAAACTCGTCAAGGGGTCAGAGATACTATTAAACCAATAGAAAATCACTCGAACATGATCAATCAAGGATCAAATATGGAAAAACATATATAACATTTCGAACAAAAAAGATAAATGTAGCAAAGTATTCGAACCAAT # Right flank : GAAATATTGACTAGAGGTATGATCATTATTGGGGAGAAAGATGAAGTAATGAAGTGTTTTGATCGGGTGCTTGGGGAAAGATGTGTAGTGTTTTTTGTATTGTGTGGGGTTTATTGTTTTATTGTTTAGGGTTTTGAGTTTGTTTGTTAGAATATTAGTTTATGTGTGTTGGTTTAGTAGTTTTATGATTTTTGGCAGCATTTCCCATCCATGAGGTATTATTCCTAGTTTTCCTTTTCTGCATTCTTTTTCTGTTAGTTTTGTTGTTTGGTCTGGCTGTATTGTTTCTGCCATTACTGCTACGGGGACTGGATCATCTGTGTGTGCTCCTATAGATGGGGGTGTTGCGTGGTCTGCTGTTACTAGTATTGCTGTGTTACTACTCATTTTTTCTAGGAATGGTTGGACAAAGTATTTATCTATATCTTCTATTCTCTTCTTTTTCAACTCTATGTTTCCATCGTGTCCTGGTTCATCTGGTCCTTTTAGGTGTACATAGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 394922-394514 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 394921 25 100.0 40 ......................... ATGGTTCTGACAACATGTTCGGCTCTTTCAATTATTTTAG 394856 25 100.0 41 ......................... GTAATGCACGCAGTTCAACATAGCTTATGCCAGATAAATAT 394790 25 100.0 41 ......................... CTAATAACGGGTGCTGTTGCAGTTGCAGTTACTGTTACGGG 394724 25 100.0 39 ......................... CTGAGAACCCCCATCTTTCACACCATAATATTTAGTAGT 394660 25 100.0 38 ......................... TTTTTTATCCTCTCCACCATCATCTTTCTAGCATCCAC 394597 25 96.0 35 ......................G.. ATGAAGATCTGTAGGAATTATATGTTTGTCATATA 394537 24 72.0 0 ..G....T..G..T...-....GT. | ========== ====== ====== ====== ========================= ========================================= ================== 7 25 95.4 39 GTAACAACATAGAAAGAATTGAAAG # Left flank : TTTTCGAATTGTTATATATGTTTTTCTATATTTGATCCCTAATTGATCATGTTCGACCAGTTTTCTATAGACTTAATAGTATCTCCGACCCCCTGAAAAGTTTGTACAATGAAAAATATTCGATTGTATGTCTATGGATTTTTTGTATAATTTTCATTAGTGAGGCGCAACAGTTAGGAAATAATGATTATTTATGAGGCAGTTTAGAATTTAGCGAAAGCATAATTACATAGTAAACTTCTGCCTAAACCATATAAACAATTAAGAACAAAAGCAAAAGCAGAACAAATCAGAAACTACAATCAATAAGCCTATTAATACACATGGATAATAGAAACATAGTCGAATGTTTTTCATTATACAAACCCATCAATACCTCAAAGATACTATTAAACCAATAGAAAATCAATCGAATATGATCAGTCTAGGAATTAAATATAGAAAGCAATATATACTGGTTCGAACAAAAAATACAAATGTAGCAAAAAATTCGAACCAAA # Right flank : TTAGGGTTGTGTGGGTGTTGTGAAGGATGGGTTGTTTTGGTTGTGGGTATTGGTGTTGATGCGGGCCCGCCGGGATTTGAACCCGGGATCTCCGGCTCCGGAGGCCGGCGCCCTTTCCTGGCTAGGCTACGGGCCCGTTTTTGTCTATTTCTTGTTTTTATTTGTTTTGTTGTTTTATATTGTTTGTATTAGTATTATTGCTGTGATTATGATTAGGGATGTTAGTGTTAGTATTAGTGTTGTGCTAGCTACTAGTTCGGGTTTCCAATTATATACTCTTGCTATTACTGTGTTCATTACTGCTGGGGGCATTATTGAGAGGATCATTATTTCTTTCCAGTATAGATTGGGGCGGATTGTGAGGAATGATAGTATCGTATAGTGTATTAGTGGGCTTGCCAGGAATCTCCATGTCCCTGTAATATATAGTGCTTTCATGTATTGTTTAATATGTGATAGTGTGAGCGGTAATGTGTATCCCAATACATATACTGCGCTGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 395395-396043 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 395395 25 76.0 34 AG..A......T...C........A TAAAATATAAACGTAACAACGTATTCGAACCAAA T,C [395406,395414] 395456 25 100.0 38 ......................... TCGACATCGATCCAGTATCTGTTCCCGACCCGATCGAT 395519 25 100.0 38 ......................... CCCTTTGTCTAGGCATACCCTAAAGTTTGCATATTGAT 395582 25 100.0 38 ......................... CCCTTTGTCTAGGCATACCCTAAAGTTTGCATATTGAT 395645 25 100.0 40 ......................... CCTTTTTTCCTCGTATTGCCTGAATACTTCGTTAGGCAGT 395710 25 100.0 39 ......................... CCCTCAAGCGAGTCCAGTAGTTCTCCTATATAATTGCTA 395774 25 100.0 40 ......................... TAAACATCCTGCTAAAGCAAATACGTATCTATTGGAGTAT 395839 25 100.0 40 ......................... CCATCTTTCGTTCTCACATATACCCAATCACCAGCTGGAT 395904 25 96.0 40 ...G..................... TGAACAACCCGCCTTTACTCCTTTTGCTCTTCCTTTTTCT 395969 25 96.0 25 ...G..................... TGGTCGTCATCATAGTATACATGTA Deletion [396019] 396019 25 76.0 0 ...GA.....T..........GGT. | ========== ====== ====== ====== ========================= ======================================== ================== 11 25 94.9 37 GTAACAACATAGAAAGAATTGAAAG # Left flank : ATCTTTCAATTCTTTCTATGTTGTTACTTTGGTTCGAATTTTTTGCTACATTTGTATTTTTTGTTCGAACCAGTATATATTGCTTTCTATATTTAATTCCTAGACTGATCATATTCGATTGATTTTCTATTGGTTTAATAGTATCTTTGAGGTATTGATGGGTTTGTATAATGAAAAACATTCGACTATGTTTCTATTATCCATGTGTATTAATAGGCTTATTGATTGTAGTTTCTGATTTGTTCTGCTTTTGCTTTTGTTCTTAATTGTTTATATGGTTTAGGCAGAAGTTTACTATGTAATTATGCTTTCGCTAAATTCTAAACTGCCTCATAAATAATCATTATTTCCTAACTGTTGCGCCTCACTAATGAAAATTATACAAAAAATCCATAGACATACAATCGAATATTTTTCATTGTACAAACTTTTCAGGGGGTCGGAGATACTATTAAGTCTATAGAAAACTGGTCGAACATGATCAATTAGGGATCAAATAT # Right flank : GGAATATGGTTGTTTATTTGTTTATTTTTTGGGGTTTCTATAGTTTTTAAAAGTTTATTGATAGTTTGTTTTTGTGATGTTGTGGTGGTTTTTGTGTTTTTGGTTGTGTTTTTAAGTTGCTTTGTTTATTTTTTATTGTTAGGTGGTTGTGTGTGGTGGGGCGTGTGGAGGGTTGGTTGGTTTTTAGTGTTTTGTGTTTGTTGTTTTGGGGTTTGTGGGGTTTTATTCTTAAGTTGGCTTATTCTAATTTGTCTTGGGTTGAAACATATTTTTTGAGTAGTTTGTCTAGTTTTATTCTTGTGTTGTTTGTTGTTTCTTATTATGGGTTAAAGTTTCCTCCTCTAAATACTTATTCGGCATTGGCTTTTATTGCTGGATTTTTTGGTGGTGCTGGATATGTATTTTTTGTTAAAGCTTTGGAGCAGGGTAAGGCTAGTGTCGTGATCCCTTTGACAGCATTGTATCCAGCAATTACAGCTGTTATTGCATTGGTTGTTTTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : GTAGCAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 564439-565365 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 564439 25 100.0 40 ......................... GCAGAAATACAACAAACATGGTTTCACATATAGGGGATTG 564504 25 100.0 41 ......................... TTTCTTTGCTAGTATAACAGCTTCGCTTAAATCACTCGGTG 564570 25 100.0 39 ......................... TCATTCTTCCAAGCATAATATAATGCTGTCATGATAGTG 564634 25 100.0 38 ......................... ATAAGCATTGTTGCTTGCCGTAATTGTTACTGATACAG 564697 25 100.0 38 ......................... TCATATAATCGTCTTTTTTCTGCTTTATTCATGTTAAT 564760 25 100.0 40 ......................... ATTGTTTCAAATGTTTCGCCTTGTTTCTCCAGTTTGCGGG 564825 25 100.0 40 ......................... ATACAAGACGACTATCCCAAAGAAAAATATAGATTGATTG 564890 25 100.0 40 ......................... TGAAAGTATCTGTTCAAATATTTCTTAACAATTTCAACTA 564955 25 100.0 39 ......................... TTAGTCCGAGCCATTTCTCCAAGATGTCTGGAAGAACAG 565019 25 100.0 39 ......................... TATTATCAATTCTTGGAACAGGCATAATATCACTAGCAT 565083 25 100.0 40 ......................... ATTATTTATGCTCGGCATCAGGCTCAACAATAAAGTCTTA 565148 25 100.0 39 ......................... CCGCTTTGTCTTCAAAACTCTCGCCTGGTCTTTGCCACT 565212 25 100.0 40 ......................... TTTACTAGTTTAACTGTTACTGTTTTACTGGCATCTGCAT 565277 25 100.0 39 ......................... TATTGTAATATGCAGTATCGCTACCCAGTAGAAGGCTTT 565341 24 96.0 0 ...........-............. | C [565350] ========== ====== ====== ====== ========================= ========================================= ================== 15 25 99.7 40 GTAACAACATAGAAAGAATTGAAAG # Left flank : CAAACCAGATTTCCTCTTCAACTTAGACAACATTCTCCCCTAACTATAACAAAACTAATTAAAACAACAATATAAAACACCTAGTAGTACCGGGTTAAAAAAAAGTATTAAAATCCCAAATCATCTTCAAACAACCTATCTAACTAAAACTAATGAATTAATGACCAAATAGCCACTTCCAAAAAGGATCATTTCAGAGATTCAAATCACATAAATACTCATAAATAAAGTATACTTCATAGCTCCAAAAATAGATGCCTCCCACGCAACCAGATAAAAATAAGTAAATAAATTCTTACATGAAAAATATAGAAACTTTACCCATAAAACTAATGGAAACTAGTCGAATGTTTTTCATTATACAAACTTGTCAGGGGGTCAGAGATACTATTAAGTCTATAGAAAACTGGTCGAACATGATCAACCAAGAACAAAATATAGAAAGCAATATATACTGGTTCGAACAAAAAAGATAAGTGTAACAACGTATTCGAACCAAA # Right flank : GTAGTGTTCAGGGGGTGTTTTGAATCGTTTTATGAGGGCTTGTATATATGTGGAGTATGCTTGTTGGTGTGGGGAGTGGTGGTGAAGGGTTCTCCTGGGAAATGTGGTCTTGTGGAGTTTACATTTTTGGTTGAAGACTATCCTGATATATCGCATCTACTTAGTATTGTGGAGAAGAAGCTTGGTTATATTCCGCTTGATCTCATGTTTTCAATGATATTTAGTGGTGATCGATTGTTTAAGAAGAAGCTTAAGAATTATGGAATTAATGTTGGTAGTGTTAAAAAAATATTGGGATGACCGTGCTCTTCTCGCACTTGATATTTATGAGACAATTGATGAACATTTTAATATTGGTGTTGTAGTTGATGATCAGTATAGGAGTGAGCGATGCTTTATTATGACCGATTTAAATTGGAAAGGCTATATATAGCTTGTCCGCATCGATCCTTTAAAAGATAGATACAGACTCATATTATATTTTGATCTACACAAGCACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 8 593340-592270 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 593339 25 100.0 42 ......................... TCTTATCTTCACCACCCCCCGCAACCCCCTCGAGGGAGTTAG 593272 25 100.0 40 ......................... CTATTACAGTAATCAACGAATGGGGGTATTCTCTCGGTTA 593207 25 100.0 42 ......................... TCTTATCTTCACCACCCCCCGCAACCCCCTCGAGGGAGTTAG 593140 25 100.0 40 ......................... CTATTACAGTAATCAACGAATGGGGGTATTCTCTCGGTTA 593075 25 100.0 42 ......................... TCTTATCTTCACCACCCCCCGCAACCCCCTCGAGGGAGTTAG 593008 25 100.0 40 ......................... CTATTACAGTAATCAACGAATGGGGGTATTCTCTCGGTTA 592943 25 100.0 39 ......................... ATTAGTAGATGAAAAAGGACCCTATTCCCGCATAACAAA 592879 25 100.0 39 ......................... TCAACCATGTCGATCCAGCTTTTAGGTGTAATGGTTTTA 592815 25 100.0 39 ......................... CTCATAGCTACCGCCTTAGCTAGTAGATTCACACACTAT 592751 25 100.0 39 ......................... CTTGCTCACCTAGCCTGTCTTTTTATAAAAATAAAATAA 592687 25 100.0 39 ......................... TTTTAACTCCCTGTTCTCTCTCGGGCAATGTATATTTGC 592623 25 100.0 39 ......................... TTTCTCAGCCTTATTCATATTAATTAATTGTATCAATCG 592559 25 100.0 41 ......................... TTTTATCTATCTTATATTCAATATTATTTTCAACAACATAA 592493 25 100.0 40 ......................... CCAAGCTTTTATGAATGCGAAACGCAGAAACGCTATTTCT 592428 25 100.0 40 ......................... AGTGTAAGCCATTCCAGTTCATTCTTGTTTGTTGGGCTAA 592363 25 100.0 44 ......................... CTAGGATCAAGCTCTACCTCGGCTCTCCTCCCATCAGGAAATAT 592294 25 96.0 0 .......................G. | ========== ====== ====== ====== ========================= ============================================ ================== 17 25 99.8 40 GTAACAACATAGAAAGAATTGAAAG # Left flank : TGATGAAAAGAATTAGAGAATACTTGGAAAAATGGAGTATAGAGTAGCTAAGCTATATGTGGATTCACTATTCAGTTTCCAACATACGTATTTATTTATAGGATTTAGACGGTTCTAAAAATATGATCAATACCTAATAGTTCATCATATTTCTTTCTCCACTAGAAACAATCTCTCATATAATTTTCCTCCTAAACCAAATATCTAAGATCCAAAACCCAACACTATCCCTAAAATATGTAAAATAAAAATACACCAATACCAACATTCCCGAACAAAACAGCCAAGCAGTTTCTAAACAACAAACACATAAAAACACATACAAAACCAATAGAAACATAGTCGAATGTTTTTCATTATACAAACCCGTCAATACCTCAAAGATACTAATAAACCAATAGAAAACCAGTCGAACACGATCAACTAAGAAACCAAATATAGAAAAACATATATAATGATTCGAACAAAAAGATATAATGTAGCAAAGAATTCGAACCAAA # Right flank : TTGTTTTCTGGCTGTGTTGGGTGTGTAATGTTTTATATTGTGGATTGGAGTGTTAATAATTTGTTTTATATATGTTTATATTATTGTTGGGGGTGAGTTGTGTTTGAAGCTTATTGGTCTTATAGGTAGTGGGTCTAGTACTGCTTATGCTCCAGTTATTATTTGGGATCGTGTTGAGCATTATGCTAAGGAGGAGCAACTTGTAGTTGTTGATGATTCCCGGAGGAGTATGAGGTTTCTCGGTGTTTTAAGGTTGATTAGGCGTTATGAGCCTTTCCTCGATTCTAGGAAGAGAACTAGTTATGTTGATAATCCTGATCTTGTTGAGACTGGTACTCTTCCACATAGTTCTGGCTATGTCTCGATTATTGGTGTTATTTCTGAGAATGGAGTGGTTGAGCCTCAATTGCCTCCAAATCCTGGTTCTAAAGTGTATGTTGTTGAGTCTCCAACGGATCTAAGCCTTGAGCTTGGCGGGGGGCTTGTTATTGGTGTTCATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 597053-598118 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 597053 25 100.0 41 ......................... ACCGCCCTAGGAGAGGGCTCGAGCCCTGATTTGCTCCACAA 597119 25 100.0 41 ......................... GTATCAAGTATCCATTACTGCCTTTCACGACACGATAATCA 597185 25 100.0 38 ......................... TTCCTAAGAAACTCTATTCTTGGATCACTATCTTCTCC 597248 25 100.0 41 ......................... TGTTATTCATAGCCATTATAATACTAATGGCTAGAAGGGGG 597314 25 100.0 42 ......................... TTAAGTAGAATTGTTGAACGGCTAACTGGATTTGACATGTTA 597381 25 100.0 40 ......................... TATGTAGTTTCTCGGCTATATGATCTATTATGGAGAGTGT 597446 25 100.0 40 ......................... AAAAACAAGTGCTCTAATGCCTTATCCCAATCCCTATACA 597511 25 100.0 39 ......................... CTTGCCATTCTATTGCCGAGGATATTGAATGATCCAGGA 597575 25 100.0 40 ......................... TGTCCAATAATGAACGTAATTGTTTTCCCGATCTCGGTAT 597640 25 100.0 40 ......................... TAACTAATCCTAACGCAGATCCCATTTCTTTCATACTTGT 597705 25 100.0 43 ......................... CTTATTGGAGAAAATACTTAGTGAACTCTCCAAGCATGATTGT 597773 25 100.0 40 ......................... ATTATTGCAAATATTAACTGTGCAACATCGCGTAAAGTAG 597838 25 100.0 40 ......................... CCCCAACCTATACGCACCGGCTCAGTTGAAGTGGCTGGTG 597903 25 100.0 38 ......................... TGTATTCGTCTTGCACATGTATTGTTATGCTACCGCTC 597966 25 100.0 39 ......................... CGCTTTTTCTAATGCAATTGTGAATTTTCTCTTATCTGG 598030 25 100.0 39 ......................... TAAGCTTGAGGGGAAAACCGAGATAGTGTCAGAAACGAT 598094 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 17 25 100.0 40 GTAACAACATAGAAAGAATTGAAAG # Left flank : CACGAATATTTGCTTCTTCATCCGCTCCATAGGTATTGGATCTATTTTAATAGTAGTATAGTGTAATTGCCTAGTTAAAGGAATATGTCTACCTCGTATTACGTTAGATATGTTGTCCCATTGAACGTTTTTATTTTTGCCATAGGTTGCGATCTAGGACCTATTATAATTATTGTTTTACCAATGATCTCTTCTAAATAAAAATTCCTACAAGCGATCTAGCGATGACTTTCTATCCTATCTACTATACTCGTATAGTGTAGGTGATGCTTCCTTGTAGGGATGTTGTGGTAAGAAAAATTATAATAGTAGTAAACAATACCTCAAACAACAAAGAAAACCAATCGAATATTTCCCATTATACAAACCCATCAATACCTCAAAGATACTATTAAACCAATAGAAAATCACTCGAATATGATCAACCAGGGATCTAATATAGAAAGCAATATATACTGGTTCGAACAAAAAAATAAATGTAACAACATATTCGAACCAAA # Right flank : GATTATTGTTAAAAGGTTTAAGGATAGATAGCTGGTTATGAAGTTGGTATAGGTAATATAATATAAGTGTATACATGGTTCGAGAAAATAAGTCTGTTATTCTAACATGCTGTGTTTATGAGGCTGTATCTAAAACTGATAATAAATATTATGCAACATTTGAATGACTCGTAACACCATTCGGACTAGACTATTTGCTTATTTGGATACTATGGTTGTTTTGTAGTGTTTATGTTTTCGCTTTATAAACACTTTATAATTGTTTGTAAAATGCAGATGAAGGGCTCAAAAGTGGTCTATGTGGAGCCCCAATAGCCTCTCAATGAAGAGAGTGAAAAACCCGACCCAAAAGGGGGGAGCCTGCAAACAATAAAGCACGGGCATTCACTTCATTGATAACCATTTCAAGGAGAGCGTGAATGGGCTCTACTGGGAGGGAGAGATAAACGGGATATATATAGTTATTGATGCAAGTTTTCCAAATGTTGGAGAAATATATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 10 603024-602741 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 603023 25 100.0 39 ......................... CTAGTGTTTGCCCAGAAAGCACTTAACGATTCCTTGGGG 602959 25 100.0 42 ......................... ATTCTTTCTCTATCTATGTCCTCGAAGCTCTTATTCTCATAT 602892 25 100.0 39 ......................... GATACCGGGGACAATGGTTCCTAGAACTGCCCCTGCGAT 602828 25 96.0 38 ...A..................... CAGACCTGTCCCAGCAATGCTAAGAAGCTTGCAGCTAA 602765 25 88.0 0 ...A.....T...........G... | ========== ====== ====== ====== ========================= ========================================== ================== 5 25 96.8 40 GTAGCAACACAGAAAGAATTGAAAG # Left flank : CAATCATAGTAGCATGATCATGGTGCTTATGAGAAATCCCATGTCCATTATCAGAATTAGACATACTAACTCCCCAATAAGAACAGTTTTATCATATTTACAAGACTCATAATTATGTATACTTATACATCTTAATATATCTATCATAGAATAATTAAAACAATAACTAAATAAGAAAAAGAACAGCCCAAAAACAAAAATAAAAACACAACAACTAAACCACTGCTTATATCTTGGAATTTTAACACATATCGCCTCAAAAAATCATAGCCACTAAAATCATTAGATAATATCTAGAACAGCAACATCCAAGAAAAACACATACAAAACCAATGGAAACTAGTCGAATGTTTTTCATTATACAAACCCGTCAATACCTCAAAGATACTATTAAACCAATAGAAAACTAGTCGAACACGATAAATTAGGGATCAAATATGGAAAAACATATATAACATTTCGAAAATAAAATATAAACGTAACAACGTATTCGAACCAAT # Right flank : GTTATTTTCAATTATGTATTAAATGAAATGAATTGAGAGATGAACTGTGTGATAGGTTGGACGGGTGTAGGGAATTGTTGGTGTGTTGTAAAAAGGCTTGGTGTTTATTTGTTTGTTTTCGGTGGTTTTTGTTTTTGTTATTTGAGGCGTGTTAGTATGTATGCTAGTATTGGGATTATTATGATTGCTGTTATGATCATTGCTATTCCGTATGGGGATTCTTCATTGTTTTGACTTGTGTTTTTGTTTGGTGTGTTGCTTGTTTCTGAACTGGTTTGGAATGTAGTTGTTTGTGTGTAGCTTGGGTTTGTGCTGGTAGTGGTTGTGCTTGTGGTTGTTGTGGGGGTTGTGGTTTTGGTTTTGCTAGTTGTTGAACTTGTTGGTGTGGCGCTTGCTGTGTTTGATTTTGGTCCTTCAACTATATTGTTTACTGCGCTTACCTTGTAATAGTATGTTTGGCTGTATACAATGTTTTTATCTATGAAAGTTGTTGTTGACCC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACACAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 11 1554425-1553890 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 1554424 25 100.0 45 ......................... CATAGTAGTAACTGTTGATGCTTCAAATTATACAGAAATTAAAGT 1554354 25 100.0 38 ......................... GCTTAGTATTGGGGTAGCCCTCGAATGTAATAGTATAG 1554291 25 100.0 40 ......................... TCAGTATCAACCTCGATAAGGTCTTTTTCAGATTTGTAGA 1554226 25 100.0 40 ......................... ATACATACACTTTTACAAGGCGGGATCCAATATAATAGTT 1554161 25 100.0 39 ......................... AACATTAAATGTTGCTGAGAAGGTATATCAGGGCTTGAA 1554097 25 100.0 39 ......................... CAGGAAACCCATAAAAACAATAACATTGTGGATGCCAAT 1554033 25 100.0 41 ......................... TGTATGAGTCTACAAGCTCTAGTGATACGGGGGACATAATG 1553967 25 96.0 26 ........................T TAATATAATATGTTTTTAAAGGGTCC Deletion [1553917] 1553916 25 72.0 0 A..GA...T....T..G.......T | GG [1553893] ========== ====== ====== ====== ========================= ============================================= ================== 9 25 96.4 39 GTAACAACATAGAAAGAATTGAAAG # Left flank : ACCAATAAACTCATAGTCAACACCAACATAAGTTATAGGAATATTATGGCACAAAGGCAAAAGCTCCGAAGCCTTCTTAACAGCCTGAATAGCAGCAACACTAGTCACAGTTAAAACATCACCCTTCTCAACCCTACCCTCCCTAATCCTCCTAACAGTCTCAGGCCTAAGCCTAATAACCCCCTCAGCAACAGCCTCACGAAAAACAACCCTCTTACCCGACACATCAACCATAGACACAAACAACCACCTCCCTCCACCAACACAAACATATAAGCAACAACCAAAAATAAACAATAACCAGACTTAACAACAAAATATACAAAAAACCAACGGAAACCACTCGAATGTTTTTCATTATACAAACTTGTCATGGGGTCGGAGATACTATTAAATCTATAGAAAACTAGTCGAACACGATCAATTAGGGATCAAATATAGAAAAACATATATAACAATTCGAACAGATTAAATAAATGTAACAACGTATTCGAACCAAA # Right flank : ATTTGTTGTTTTGGTTTGAAGTAGGGTTCTCTGAGTTGTGTTGCTTTTTCTAGTAGTTTTTGAAAAGCTTCTTTGTCTCTGTTTAGTATGGCTTCTCGAGCATCTAGGACTAGGTCGTTTCTGAATATGCATAGTTTTATTCTGCCGTCGGGGGTCATTCTTATTCTTGTGCATTTCATGCATAGTTCTGGGTTTTGCCAGCCTATAACTATTGTTATTTTGGAGTTGTTTGGTAGAATATATGTTGGTCTTGATTGGAATTCTTTCTTATATTTCTTGACACTTATATTTTCCAAGTAATTTAATATGTTGTTTAAGCCTGCATGTAGTTTTTTATATGTTTCTTGGCTCATGCCTAGGGGGATTAATTCTATGATGTTCATGTCTAAACCATGTTTTTGTGCAAAAGATATTAGATCTTTGTATTCATTAATGTTAAGGCTTAGGATGACATAGTCTATTTTAAGCTTTAATCCATACTCTAATGCTTTGTATATGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACATAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 12 1564499-1564219 **** Predicted by CRISPRDetect 2.4 *** >NC_009033.1 Staphylothermus marinus F1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================= ================== 1564498 25 100.0 39 ......................... TTAAATGCTAGTTCTATGTTGTTGTTCAATAGCTCTTTC 1564434 25 100.0 39 ......................... AAGGTTTCGGTAGAATATGGTTGGGTGTTCATGGGTAGT 1564370 25 100.0 39 ......................... TGTAAAAATTTAGCTAACTTAAAGTTTATATATTTATTG 1564306 25 100.0 38 ......................... ATAATAGAGAGCTTCAGAAAAACCACCAATACTTAAAA 1564243 25 96.0 0 .........T............... | ========== ====== ====== ====== ========================= ======================================= ================== 5 25 99.2 39 GTAACAACACAGAAAGAATTGAAAG # Left flank : TATATATGATAATAAAATAAACCCTAAACCAATGGAACCCGTAACCCTAGCAGATAATAACTCATATAGTTCAGCGTGAAGTATCGATGAAAAAGCTCTAGCAGACATAAAACCAAGCGTTAAAAGAGAAACCCACAATAAACCATTAGCCTCCAAAACCTTAATACTAATATGAGGAGAAACAATACCCGAAACAATCATCACAACAACCACACTAAGCACCGCAGTATAAAAACTACGACCATCAACAATAACCCCAAACACCAATAACCCACCACCAATATATATACAAAAATAACTCTACCTCCCCAAATACTATAACACAACATCTATAAAAAATTACTCGAATATTTTTCATTATACAAACTTGTCAAGGGGTCAGAGATACTATTAAGCCTATAGAAAACTAGTCGAACATGATCAATTAGGGATCGAATATAGAAAAACATATATAACAATTCGAACAAAGAATATAAACGTAGCAAATAATTCGAACCAAA # Right flank : CCCAGAATAGCTACACACAAGGGATGGATCACAGTCGATTTTGAACCACATAAACAATATTGAAGATATGTTAATCGTGGATGGAAGCTGAGCGGTGAGGCAAAAATAAAGCTTGATAAAAGGGAATAGGAGGATCAAAATCTATCTTACATTTGTAAAGGACGTTGTTGTGTATAAGTCTAGGGGTTATATATCTGTTGATGTTAAGCCTCGTGCCGTTGGGATCGACAGCCACCCATGAATCCACAACCCTTTTCCTAGGGTTAGGGCTGTGGACAAGGTGGAACTCCCTAGATGCGACTATAAACACATATAAAATAATTAGAATAAACATCTAGGGAGAAACGGAATCTTCAAGCATATATTGCTTCTTATTTTATGGAGAAACTGTATGAGAAGATTGATTTGCTAACCTACTTGGAGAGAAGGGGTAGTGTTCATTATATCTAATTGTCAAATAAATCATTTTTACAATAAATTCTTATTCTATGATAAGAAAT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACACAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //