Array 1 132-519 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFE01000262.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_124_length_17096_cov_41.63_ID_247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 192 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 252 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 312 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 372 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 432 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4-1168 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFE01000330.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_198_length_10933_cov_41.6773_ID_395, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 64 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 124 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 184 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 244 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 305 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 365 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 425 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 485 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 545 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 605 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 665 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 721 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 781 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 841 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 901 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 961 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 1021 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 1081 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 1141 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10803-9694 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFE01000330.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_198_length_10933_cov_41.6773_ID_395, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10802 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 10742 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 10682 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 10622 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 10562 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 10502 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 10442 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 10382 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 10322 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 10261 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 10201 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 10141 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 10081 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 10021 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 9961 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 9901 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 9841 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 9781 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 9721 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //