Array 1 53296-54239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXJ010000008.1 Escherichia coli strain BfR-EC-17655 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53296 29 100.0 32 ............................. CCGTAGGCTTCGTGGGATATGTGCATTGAGTC 53357 29 100.0 32 ............................. CCGCCGCACTGGACCAGTCGAGTTGGGGCGGT 53418 29 100.0 32 ............................. CTGGATATCTCCCGCCAGCGGCAACTGTAGTA 53479 29 100.0 32 ............................. ATGAAGCGGCATTACTCCAGGTGTTCAGAGAG 53540 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 53601 29 100.0 32 ............................. CGCCGCATGACAGGGTCGAGCAGGCGTTTAAC 53662 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 53723 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 53784 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 53845 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 53906 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 53967 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 54028 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 54089 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 54150 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 54211 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79957-81146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXJ010000008.1 Escherichia coli strain BfR-EC-17655 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79957 29 100.0 32 ............................. GGGGTAAGAAGGACCGCCAAAAATATATTAAT 80018 29 100.0 32 ............................. AAAAATCCCCTGCACATCACCGACCCACGACA 80079 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 80140 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 80201 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 80262 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 80323 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 80384 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 80445 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 80506 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 80567 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 80628 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 80689 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 80751 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 80812 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 80873 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 80935 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 80996 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 81057 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 81118 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //