Array 1 83935-85219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDU01000009.1 Yersinia frederiksenii strain 3430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83935 28 100.0 32 ............................ AACGATATCAAGATGACCATTCCGCCGGGAAT 83995 28 100.0 32 ............................ ATAGCGTTGGCGTCGGACCCCATCCCGTTAAC 84055 28 100.0 32 ............................ GATGCCGACGAGCTGAACAGCAACCACATCAC 84115 28 100.0 32 ............................ GTCGGCAGTGATTTAGACCAGCTCGGCGCAAA 84175 28 100.0 32 ............................ TTGCCAGCGGGCGCGACCCTGAGAGTAAGGTT 84235 28 100.0 32 ............................ AACAATGGGTAGCGGTCGAATCTTCCAAATAC 84295 28 100.0 32 ............................ ACATCGCCACACAGAGCGTGGAACATGCTGTT 84355 28 100.0 32 ............................ ATCATTAAACATTAAGCCCCCTCATCATCGAT 84415 28 100.0 32 ............................ TTAAAGTCTGTAAACTAAAGTGGGATATAGGA 84475 28 100.0 32 ............................ TGCATGGTCAACTGATGTCTCGCTATGAGAAT 84535 28 100.0 32 ............................ TTAATCACTCCCTCTACGCTGGCCGTGTTCAC 84595 28 100.0 32 ............................ TCACTGCTTACACCATGGTGATAATTTGTTGC 84655 28 100.0 32 ............................ TTAGACAACCTAATCTTCCGCAAGACCTCTCG 84715 28 100.0 32 ............................ CGAACGTGGCGAACCGCAACAAAGGGGAACGC 84775 28 100.0 32 ............................ AAATACCTCGGCATGAGCCGCAACGCCGGGCA 84835 28 100.0 32 ............................ AATTCGATAAAGCTCCCACTTATCTATCTGAT 84895 28 100.0 32 ............................ AAACAGGCGCTATTGCCATTTTCAACGGTTCT 84955 28 100.0 32 ............................ AAAGCAGCTGAGACGCATTAACCTACCTCGGC 85015 28 100.0 32 ............................ GTCTTTGGTGCGCTGGGATCGGCCTTCATCCG 85075 28 100.0 32 ............................ AAACAGGCGCTATTGCCATTTTCAACGGTTCT 85135 28 100.0 30 ............................ AAAGACCTGGCTTGTTGATATAGAGGGATG 85193 27 78.6 0 ...............A....-GG...GC | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.0 32 GTTTGCTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGCTAATCTGATGCAGCAAAACTTGTTACAAGGTCTGCGTGACTACGTTCGATGCAGTGCGGTATTGCCAGTGCCTAAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCATTTGAACAAATTCCTGACACCCAACAGAAATCTCTTAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGTGAATTGCGGGAACAAGCTCAGTTGGGAAGTTTTTCTGCCTACGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGACTATTGCTAAGTCATTGTTTTATCATGGTGTAATTAAAGGGGGAGAAAAAAGGGTTTTCCTGTCACTATCCTGCTTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACG # Right flank : CAAGAAGTTATTCTCCACAACAACTAACTCCGACGTGCATATCAGACCCGAAAGCGTATTTTCCTTGTACTTTCCATAACTTACAACCACTCTTAGCGGACGTACCTTTACCCGCCGGGGATTTTTTCCCAACGTGCGTTTTTGGCCTGAAAGCGCTAGACGAAAATCAATTGGAATGTGAGTTGGCCGGGAGCTTATACAGCTAATCGATATTGAGTTTAACTATAAATATATAAATCAATAGAACTTTCAGCCCCAATACTACCTAAGAACCGATTCGTTTCTGCTGACCAATAGATAGATGGTTTTTCCCCATTCTCTACTTCGATTAAAAGAGAAAAAATGAACGTAACACCATATTTCTCTTTTATTTCTTCCAATACATTAATTTTACATTTTAATAGCGACAATAACTTTCTTGTTTGCTCATCTACATCATAGGACTCTTCCTTCTCCGTACAGATTGACCAACTAGTCTCTGTACTCGGTCTTTTTCTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //