Array 1 102010-100332 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFU01000068.1 Escherichia coli strain M45 M45_BDMS190049445-1a_1.clean_(paired)_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102009 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 101948 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 101886 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 101825 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 101764 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 101703 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 101642 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 101581 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 101520 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 101459 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 101397 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 101336 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 101275 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 101214 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 101153 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 101092 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 101031 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 100970 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 100909 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 100848 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 100787 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 100726 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100665 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 100604 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 100543 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 100482 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100421 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100360 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118577-117511 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFU01000068.1 Escherichia coli strain M45 M45_BDMS190049445-1a_1.clean_(paired)_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118576 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 118515 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 118454 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 118393 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 118332 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 118271 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 118210 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 118149 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 118088 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 118027 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117966 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117905 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117844 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117783 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117722 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117661 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117600 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117539 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //