Array 1 98073-100053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTY010000005.1 Salmonella enterica subsp. enterica serovar Choleraesuis strain CVCC 3383 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98073 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98134 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98195 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98256 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98317 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98378 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98439 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98500 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98561 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98622 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98683 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98744 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98805 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98866 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98927 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98988 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99049 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99110 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99171 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99232 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99293 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99354 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99415 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99476 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99538 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99599 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99660 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99721 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99782 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99843 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99904 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99965 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100026 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116186-117723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTY010000005.1 Salmonella enterica subsp. enterica serovar Choleraesuis strain CVCC 3383 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116186 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116247 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116308 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116369 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116430 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116492 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116553 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116614 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116675 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116736 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116797 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116858 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116919 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116980 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 117041 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 117102 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 117163 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117225 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117328 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117389 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117450 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117511 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117572 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117633 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117694 29 96.6 0 A............................ | A [117720] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //