Array 1 1936714-1938122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046802.1 Vibrio cincinnatiensis strain 2070-81 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1936714 28 100.0 32 ............................ TGAGCAGGTGGTTCTTGACCGCCTACTGGTAT 1936774 28 100.0 32 ............................ AGTCGGTGCACCTCTACCTAAAGGGGTTATAT 1936834 28 100.0 32 ............................ GAACTCGCAACCGTTAAGCTATCCATTGCAAC 1936894 28 100.0 32 ............................ AGAAACACTTGCGCGACGGCTCTCAAGAACGT 1936954 28 100.0 32 ............................ TAAAAAAGAAGGGTGGTTTTAATTATGGCTTT 1937014 28 100.0 32 ............................ AACTGGTGGGTGGGTGCGTTGCAATCGTCTGT 1937074 28 100.0 32 ............................ AAACAAAACACCGATCGCAGCTTACTGTTCGC 1937134 28 100.0 32 ............................ AGAAAGCGGCATTAATATCGCCGCTTTTTTTA 1937194 28 100.0 32 ............................ GCTATTGGCACTTTACATACTTTGATTGGATA 1937254 28 100.0 32 ............................ TAGTGAAAATTTAAGAACAGGCAAATCACCAG 1937314 28 100.0 32 ............................ AAACGAGCGCGGCGCTAAGAAACATCGCTTTA 1937374 28 100.0 32 ............................ AAACGGCAAGGTTCATTTAATGTGAAAATCCC 1937434 28 100.0 32 ............................ AGTAAGCGCCTTGAGTAAAATAGAAGAATTTT 1937494 28 100.0 32 ............................ GCAATTCAGTGATGAATCACTATCCATTGACC 1937554 28 100.0 33 ............................ CGAAGATATGGAAGAGAAAGATGCGCATATTCA 1937615 28 100.0 32 ............................ CCGAAGGAGCCACCAACCGCGAAAAAGCTACG 1937675 28 100.0 32 ............................ ATGAAGAGGTGCTGATCACCGATTTCGTCCCT 1937735 28 100.0 32 ............................ ATTGTAGATGTTTGGGGGCGTCCGATTGAGTC 1937795 28 100.0 32 ............................ TATGCGCGAGGGCGCTTTACCCCTGGAACAAT 1937855 28 100.0 32 ............................ CTGTAGAACAGGCTGCACGCAGCACATATTAC 1937915 28 100.0 32 ............................ TCAAGCAACACTACGAATAACAATACATCGGG 1937975 28 100.0 32 ............................ TACTGAGTACAAATTGCCATTTCCTTGGACAG 1938035 28 100.0 32 ............................ TTGCGGCCCACGCGCCCCTTGATGAATGACAG 1938095 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAAATTACGTAAGCTTTGTGCGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCGCAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTATGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAACCAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTGTTTTTATTGATTTATTCTATA # Right flank : AATCGCCAGCACGTTGATGGCGTGGACGATATCGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGATTTAGAGACAAAAAAAGACGTCCTGGGACGTCTTTTTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTATTGATGTTTTTATCTTAGACTCTTTAGAGTGAAATCAGTTGATTTTCTCTATAACTTTATGTTTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 388206-387451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 388205 32 100.0 34 ................................ TAATTTAGATTTAAGCTTTTTAATCGCGTCGGGA 388139 32 100.0 33 ................................ CAAAACTCTTCGTCCCTGAAGAACCTAAGAAAA 388074 32 100.0 35 ................................ TGAAATAAGAGGTGAACGGTTTCTCAGGTATTGAC 388007 32 100.0 33 ................................ GAGTAAACAGACATAGTCACAACATTAAAATTA 387942 32 100.0 34 ................................ AGAGTAAAAATAACCTCTTGGCCCATCACTGGCT 387876 32 100.0 34 ................................ CATCAATCTGCATGGACAAACGGAGGACTCCCTC 387810 32 100.0 33 ................................ ATCGATACTGGTGCAAGGATTGAAGAACGGCCT 387745 32 100.0 34 ................................ GGTAAAAACTTTACTGTTGAGTTAGTTACTGAGA 387679 32 100.0 34 ................................ GGTAAGACGCGACAATAAACGTCTGTTGATCATC 387613 32 100.0 33 ................................ CGTTTATTATCGAGGTCATTAATTCTGTTTTGC 387548 32 100.0 34 ................................ CCTGTCGTATGTTTGGAACGGGGTAATTGGCTTC 387482 32 93.8 0 ......................A.G....... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.5 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGCCAAAAACGTCTCAGACAATTAGCAAAGGTGTGTTTAGATAATGGCGTAAGGGTACAGTATTCAGTGTTTGAATGCGACATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAATCCATAGATATATTCAGAGATACCCTAGTTTTATAGTCGCTAGGTTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATTTGTATAGATTCACACAAAGTAGTTTTGTGCTACTGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTATACGTGCCTCTAAGAAGAGGCA # Right flank : ACTAGGGTTAATCCGTTCAATCAGCGCTTTGCAGTTCATCGTTAGTGGGTGAACGTGTTCTTTTAAATGGTCAATGTACATAGTCTCTTCCCCAAAAGGAGTATAAAGTCACAACTAAATGTAACCGTCAAATTGAACGTTAATTGACTGAAAAATATTCATGACCTAACTTTGCACCTAACACCGACAATGATCAAATAACTTTCAATTGCTTAGTTCCTGTTCCTGATAGGCTTCTTCGATATGCTCACTCCACCAACTTGTCATTGGTTGGCGGAGTTCAAGGTAGTCAGTAAGGTTATAGGCACTGCGGACCTGGTTATCGTCCACGTGAGCTAATGCCGACTCAACCAAGTCAGGATCAAAGCCTTGTTCATTGAGTGTGGTACTCGCCAGCGAGCGCAAACCGTGGCTAACTAATCTTCCTGCAAAACCCATACGTTTCAGAGCCATATTTGCCGTTTGGCTGTTACATGGTTTCTTTGGATCTCGATCTGAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 470010-469381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 470009 28 100.0 32 ............................ GATGATTTCTTTTAAGCGAACGCTAAACTCAC 469949 28 100.0 32 ............................ ACTACCACCGGTTAAGCTGGTGTTCTTCGAAC 469889 28 100.0 32 ............................ CGCCTCCGTTGATCCGTCGATACTTTGCATTA 469829 28 100.0 32 ............................ ACATTCTTTCGATAACGAGTTAATGACCACAT 469769 28 100.0 32 ............................ GGATATGTCTTATAAACATCCTCCTCATACCG 469709 28 100.0 32 ............................ TTAGCGTCGTCTCTAAGGTCTTATTTCCAAGC 469649 28 100.0 32 ............................ AAGACGAGCACAAAGCTCTCTATGTGTCCAAA 469589 28 100.0 32 ............................ CTCAGCCAGTGCAACAGGCTCAGACAGCGCCA 469529 28 100.0 33 ............................ TTCAGGGAAGATCGGTGAGCAAATTTCGTTATT 469468 28 100.0 32 ............................ TTGTGGAACTCAACTGATAATAAAACCCGGTT 469408 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGCGCTCAATTTTTTTGGGATGTTAACAAACGTACAGGCCGGTTCATGATGAACGGCATTTTGTTAGCTAACGGTTTCCCTATCATTAATGTGCAAGCCAAGCGTCAGCAAGAGTTTAATACGCTCATGCTCGACTTCTATTCTTCTAATGACATGACAGCAATGAATAAGTTTTTACGTAGCTGTTTGGATGAAAAAATCATTCGTAATTTCAAGCTAGATCTGAAAATCGGCTAACAAACTGTTCAAGTAGATTCGGCATGCGTGGCATTTTTGGTTTGCAGTGATTTTAGTGGTTACGTAGTGATGCAGAGACTCTTGTAATGCATGCCTCACTACTTAACAGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTCTAGTTTGGACTGGCATTTGAGGTTACGGCAGGTTAGTTTAAGTTCAACTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTATGTAACCGTAGAGAAAAAGACCACAATATATTGAAAATTAAAGTGTTTTTATGATTTTTTTACTTTGAATTTAGCTTCTACTTTGCCTGTTTGATACATTTAACGGATTGTTTTTTATTAGTTATTTTTTAATTTATAAACCCAGTTGTGTTCATATTGGTTTAGTTTTCGTCTTTTTGTCCTTCGAGTCTTTATTCAGCATTTAATGGTAAAGTGGGGTTGCGTTCAGCTTGTCTATAGTCATGATCCACAGAATCAAGTTACTTTTGTGGTTGCCAGAATTTTTTCTACTGGGTCAATGCTGACTTTTCATGTAAGTTAAATCGTGTTTGGTGATGCTGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 481512-481124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 481511 28 100.0 32 ............................ TTCCGATGGTACGTGTTTCTGATGCTGTTTAT 481451 28 100.0 32 ............................ TTTTCCTGATTCTTGGTTTTCTGCCAGCATTT 481391 28 100.0 32 ............................ ATCTTGCGATACCGCCTCGAGAGCGACATTAA 481331 28 100.0 32 ............................ TTTAATTGTCGCAATCAGTTCGCTGTATCCCA 481271 28 100.0 32 ............................ TGCTCACTCTTTTGATGATTTAAACATAGCAG 481211 28 100.0 32 ............................ GGATTTAGCTAAGTCTTTCGCCCACTCTTAAC 481151 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTGGAAAGAGTCAGCGTTAATGTATCCAATTTACTATTATGGTTCTTTTGGGCTTTTTGCAGATGGTCATTTAGCAGGTTGGTCGCATAGTGGCAGTGTGGGGGAAAAGCTAATGATGTCTCAAGTATACATTTTGCTATCACTCGTTTCGGTATTTATTCCACTTATTATCGCTGCAATCTCGGTTGTTCACATTGTTTTATTGAGAGCAGAGGTGAAAAAAGTACGAACATAACAAGCAATTCAAGTGGATTCTCAACGCGTGGCAGTTTTACTATGCGTTAGGTAAAGTGTTTTACGGTGCAATGCAGCTGCTTGGTCAGTGCGTTGTTCACCACTTAATTGGGCGTTAACTGGCAATGAAATTACCCACCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTCTAGTTTGGACTGGCATTTGAGGTTACGGCAGGTTAGTTTAAGTTCAACTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATATTCGTGAAATTACACAAATGATTCGTTGATTCTTAATCGTGATTCTTTGAATTATTTTATTTAATCAATAAGTTGTTGGAGTTATCAAGTTAGTAGCCAAAGAAAATATTATCAATTTTCTGTCCTCATAAAAGTTAACGATCGAGTCTGTTCATATTTGATAAGCTTTGTGCTTCTCGTTCTTCGAGTCTTAAGTTCATCCTTAACAGTTGAGTGATTTTGCGATGAGCTTGGTGGCCGTGATTTTTTTTGAACTAGACCATGAGTTTCGTTGTTGGCAAGTGAATATTACAGGGTCAATGTTAAACTCACATGTTGTTTTAATTTGGTTTGTTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 550884-550316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 550883 28 100.0 32 ............................ TTTAGTGAAAACGAGTTTAAGTCGTACGTCGA 550823 28 100.0 32 ............................ ATAACCAAACGTAATGCGTACTGTGCAATTGG 550763 28 100.0 32 ............................ ACGCGCCCAAATAAACAAAGAAATCTTTAAAA 550703 28 100.0 32 ............................ ATTTTGACGCTGTCCGACATAAAAAGTACAAC 550643 28 100.0 32 ............................ TACGCCAATTGATTTAATTACTCTACTTGCAT 550583 28 100.0 32 ............................ TGAATCAATTGCAGCAAATTTACCGGGATGGT 550523 28 100.0 32 ............................ TAAAAGCGAGCGATTTGTGCTTGCAGCGGAGA 550463 28 100.0 32 ............................ TCATTTTGGGCTAAACGTCAATATGGGCGTGT 550403 28 100.0 32 ............................ ATTACCCAGGCCCGCAAGAGCCTGGTTTATAC 550343 28 89.3 0 .............C...T......A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCGACAAGAATCGGCAGTAGCAACAGAGCAAGATGTGAGTATTCGTTACTACATATGCTCTAAAGAATTGGAAGCTCAAACGTTACTTGAAGCGACTCGTTCTCACTGGGGTGTAGAGGTCATGCATTGGTCACTTGATACTGCATTTTGTGAGGACAATTCGCGTATTAGAGCGGACGATCGAGCAGAGGCTTTTGCAAGGATCAGGCAGATCTGTTTGAACCTATTAAAGAGCGAAACCACGTTTAAAGGTGGTATCAAACGTAAACGGATGAACTGCGCAATGGATGAAAACTACTTAAGTAAGGTTCTCGAAAGCCTTACAGGGCAGTGATGTTCATGCGGTTTCCGTGACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAATTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTGATTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGTGGCGTTATGTTTCCGAGTACCCCACGTTTAGTAGACACTTTACTAAGTTAGATCTAGGGTCTAATTGAGAGGTGATTTATGGCTAAACATCGTAATCCAGCGTACACCGAAGAGTTCCGCAAAGAAGCTGTTCGCTTGGCTAGTCTTCCGGGCCGAACAGCAGTCTCCGTTGCCAGGGAGCTGGGCATTAGTGCCCAGCAAATCCGGAACTGGAAGCGCCAGTTCACACGCCTATCTGATAAACAGTTTAACACCTTAGATGGTGTTGATTATTCGCAGAAAGAGTCCGAAGAGCTTCGCGTCCTTCGGCGCGAGAATAAACGTCTACGTGATGAGATGGAATTCCTAAAAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 554608-554460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 554607 28 100.0 32 ............................ GCAACGTTAATGATTGCATTCTGTGCGCTAAC 554547 28 100.0 32 ............................ CGATGTAGTTTGAGCCATTTGTCATATCTCCT 554487 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGTTCATATTGGTTTAGTTTTCGTCTTTTTGTCCTTCGAGTCTTTATTCAGCATTTAATGGTAAAGTGGGTTTGCGTTCAGCTTGTCTATAGTCATGATCCACAGAATCAAGTTACTTTTGTGGTTGCCAGAATTTTTTCTACTGGGTCAATGCTGACTTTTCATGTAAGTTAAATCGTGTTTGGTGATGCTGTTTTTGGTAATGCTTTGAAATTATTGGTAAAATTACATAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGATGAGCATTTGAGGTTACGGCTGGTTAGTTTGAGTTCAGCTGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGATTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGTTGGTATTTGAGGTTACGGCTGATTAGTTTTAGTGCAGCTGTTAGCGTTGCTTGCCCCTTAACGCGGCGTTAGTTTTTTGGAGGGTACAGTGGATAAAGTTTTGTCTTACGTAAATCAAATAATGGATAGGGCCAGGGAAAAATCATGAGTGTGCCGTGGAGCACAGAGGTTAACTTAAGGTTAACCATTTGAGCGTAAGCTTAAGAAGAGATGAAGGCAGGCCCTTCAAAGTCTACTGTCGGAAGTCGGCTTTAAACCACCTGCAAGTGGCTGTTATTAAGAGTAACGGTCAGAAGCGTTGTAGGGAAGTCAGGAAATTATTCTGGTGAGGTGAGTTGTAAGGAGATGAGTAAACCCGAACTTGTGTAGACGCGTCGTTAATCCCAAAAAATAGCATCAAAACTGAGATCGTCGTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 563358-562790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 563357 28 100.0 32 ............................ TTTAGTGAAAACGAGTTTAAGTCGTACGTCGA 563297 28 100.0 32 ............................ ATAACCAAACGTAATGCGTACTGTGCAATTGG 563237 28 100.0 32 ............................ ACGCGCCCAAATAAACAAAGAAATCTTTAAAA 563177 28 100.0 32 ............................ ATTTTGACGCTGTCCGACATAAAAAGTACAAC 563117 28 100.0 32 ............................ TACGCCAATTGATTTAATTACTCTACTTGCAT 563057 28 100.0 32 ............................ TGAATCAATTGCAGCAAATTTACCGGGATGGT 562997 28 100.0 32 ............................ TAAAAGCGAGCGATTTGTGCTTGCAGCGGAGA 562937 28 100.0 32 ............................ TCATTTTGGGCTAAACGTCAATATGGGCGTGT 562877 28 100.0 32 ............................ ATTACCCAGGCCCGCAAGAGCCTGGTTTATAC 562817 28 89.3 0 .............C...T......A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCGACAAGAATCGGCAGTAGCAACAGAGCAAGATGTGAGTATTCGTTACTACATATGCTCTAAAGAATTGGAAGCTCAAACGTTACTTGAAGCGACTCGTTCTCACTGGGGTGTAGAGGTCATGCATTGGTCACTTGATACTGCATTTTGTGAGGACAATTCGCGTATTAGAGCGGACGATCGAGCAGAGGCTTTTGCAAGGATCAGGCAGATCTGTTTGAACCTATTAAAGAGCGAAACCACGTTTAAAGGTGGTATCAAACGTAAACGGATGAACTGCGCAATGGATGAAAACTACTTAAGTAAGGTTCTCGAAAGCCTTACAGGGCAGTGATGTTCATGCGGTTTCCGTGACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAATTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTGATTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGTGGCGTTATGTTTCCGAGTACCCCACGTTTAGTAGACACTTTACTAAGTTAGATCTAGGGTCTAATTGAGAGGTGATTTATGGCTAAACATCGTAATCCAGCGTACACCGAAGAGTTCCGCAAAGAAGCTGTTCGCTTGGCTAGTCTTCCGGGCCGAACAGCAGTCTCCGTTGCCAGGGAGCTGGGCATTAGTGCCCAGCAAATCCGGAACTGGAAGCGCCAGTTCACACGCCTATCTGATAAACAGTTTAACACCTTAGATGGTGTTGATTATTCGCAGAAAGAGTCCGAAGAGCTTCGCGTCCTTCGGCGCGAGAATAAACGTCTACGTGATGAGATGGAATTCCTAAAAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 567082-566934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046801.1 Vibrio cincinnatiensis strain 2070-81 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 567081 28 100.0 32 ............................ GCAACGTTAATGATTGCATTCTGTGCGCTAAC 567021 28 100.0 32 ............................ CGATGTAGTTTGAGCCATTTGTCATATCTCCT 566961 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGTTCATATTGGTTTAGTTTTCGTCTTTTTGTCCTTCGAGTCTTTATTCAGCATTTAATGGTAAAGTGGGTTTGCGTTCAGCTTGTCTATAGTCATGATCCACAGAATCAAGTTACTTTTGTGGTTGCCAGAATTTTTTCTACTGGGTCAATGCTGACTTTTCATGTAAGTTAAATCGTGTTTGGTGATGCTGTTTTTGGTAATGCTTTGAAATTATTGGTAAAATTACATAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGATGAGCATTTGAGGTTACGGCTGGTTAGTTTGAGTTCAGCTGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGATTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : TATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGTTGGTATTTGAGGTTACGGCTGATTAGTTTTAGTGCAGCTGTTAGCGTTGCTTGCCCCTTAACGCGGCGTTAGTTTTTTGGAGGGTACAGTGGATAAAGTTTTGTCTTACGTAAATCAAATAATGGATAGGGCCAGGGAAAAATCATGAGTGTGCCGTGGAGCACAGAGGTTAACTTAAGGTTAACCATTTGAGCGTAAGCTTAAGAAGAGATGAAGGCAGGCCCTTCAAAGTCTACTGTCGGAAGTCGGCTTTAAACCACCTGCAAGTGGCTGTTATTAAGAGTAACGGTCAGAAGCGTTGTAGGGAAGTCAGGAAATTATTCTGGTGAGGTGAGTTGTAAGGAGATGAGTAAACCCGAACTTGTGTAGACGCGTCGTTAATCCCAAAAAATAGCATCAAAACTGAGATCGTCGTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //