Array 1 57595-57200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJVP010000029.1 Escherichia coli strain E5 NODE_29_length_64333_cov_30.0628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57594 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 57533 29 100.0 32 ............................. AATAACACTAATTTTTTACACGGTATTCGCAC 57472 29 100.0 32 ............................. CTCTGCTCGGAGATTGCCAGTGAGTGAAAACG 57411 29 100.0 32 ............................. CTCATATTCGGATTGATCGTGTGTTTCGGTTT 57350 29 96.6 32 ............................T GCGTATATCTGTTGATGCGCACGGCGTGGCGG 57289 29 100.0 32 ............................. AATGATTTAATACCAGACGCAGAGTGCCACAC 57228 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGTGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10193-9676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJVP010000108.1 Escherichia coli strain E5 NODE_108_length_12460_cov_7.115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10192 29 96.6 32 .............C............... GAAGATGTAGGGGCAATCGAACGATTCTCTGC 10131 29 100.0 32 ............................. CCAGAGCAACGCTGGCGGGAAGTAATGGCAGC 10070 29 100.0 32 ............................. TTTGTTGTGATGCCAATTACAATACGTGATGC 10009 29 100.0 32 ............................. CCAACAAACTCATTTGCACTGGATTCGTGGAT 9948 29 100.0 32 ............................. TATTTTCTTTGTTGCGGTAGGCAATATCGCCA 9887 29 100.0 32 ............................. GTATTTTGTCACGACCAGCACGAGGCCGAATA 9826 29 93.1 32 ............GC............... CCCCAACTCATGCCCACATGAAAAACGTTGAC 9765 29 96.6 32 .............C............... CCGCAAAAGGTATTATTTTTATCCGTCAGTAC 9704 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAATCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACTTTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTCTGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-1791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJVP010000301.1 Escherichia coli strain E5 NODE_301_length_1839_cov_4.02838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 29 100.0 32 ............................. GCTAATCGGCAACAATTTTAAATTCAAAGGGG 116 29 100.0 32 ............................. TACCCAGAGATTCAGGCCAGACGCAAAGCTGT 177 29 100.0 32 ............................. TATAATAGTCAACTAGTCATTGCGTAAAATAG 238 29 100.0 32 ............................. ATCCCACCCTTTGCGCCGTCCGGTGCGTATCG 299 29 100.0 32 ............................. AGTTCATCGGCGGAAAAGTGCAGATAGCCCTG 360 29 100.0 32 ............................. GGGTTTGTCCAGACTCCCGATTGTTTTGCCGT 421 29 100.0 32 ............................. TCTTTTCGCGCTCCGTCTCGTTCACGTTTTAC 482 29 100.0 32 ............................. AGACGTTTACCCACGAATTGCGCCCGACTGCG 543 29 100.0 32 ............................. ACTTGCGGGTAACTATTCTCCGGCAAACTCAT 604 29 100.0 32 ............................. GCAGGTGGCAGAGTGTGAGAGTGAAAAACTAA 665 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 726 29 96.6 32 ............................C CGAAATCGCCCTGCACAAATTATTGACGGGTA 787 29 96.6 32 .......T..................... CCACGCCCAGGGACGACCCGTATACATTCGCA 848 29 100.0 32 ............................. CCCTTGCCCCTTATCATGAATTTGAGTGCACA 909 29 100.0 32 ............................. AAACGGATGTACTGGCCGTACTTCATGCACTC 970 29 100.0 32 ............................. GGTGGAAATTCGCTTTACGTGCGTCTGAGTAA 1031 29 100.0 32 ............................. CTGGGCGTTCTATTTATTGCATGGATGTTATG 1092 29 100.0 32 ............................. GCCTCGTCATGTCTAAAATCAAAATATCCGGC 1153 29 100.0 32 ............................. CGGTTACATCACGAGGTGACCTGGAATAACGC 1214 29 100.0 32 ............................. AAACCACGAAACAGGCGCTAATCCTGCCATTT 1275 29 100.0 32 ............................. CAAAAAATACCATGGGGGGGTGGGTAGTTTCG 1336 29 100.0 32 ............................. GGCATTTCTGGAATTAAATACGGATATAGCAC 1397 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 1458 29 100.0 32 ............................. GTCGGGCGTGAAATTAATATCGTTACGAAAGA 1519 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 1580 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1641 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1702 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1763 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //