Array 1 471333-473252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADARK010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6 NODE_4_length_488316_cov_14.7069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471333 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 471394 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 471455 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 471516 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 471577 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 471638 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 471699 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 471760 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 471821 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 471882 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 471943 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 472004 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 472065 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 472126 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 472187 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 472248 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 472309 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 472370 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 472431 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 472492 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 472553 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 472614 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 472675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 472737 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 472798 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 472859 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 472920 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 472981 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 473042 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 473103 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 473164 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 473225 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1089-2278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADARK010000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6 NODE_8_length_243648_cov_15.0216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1089 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 1150 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1211 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1272 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1333 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1394 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1455 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1516 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1577 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1638 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1699 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1760 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1821 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1882 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1944 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2005 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2066 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2127 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2188 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2249 29 96.6 0 A............................ | A [2275] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //