Array 1 1168-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXTW01000056.1 Pseudomonas aeruginosa strain MRSN435288 MRSN435288A_contig00056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1167 28 100.0 32 ............................ TCCTTTACTCCTCGCTTCTGAGGGATCGCCCA 1107 28 100.0 32 ............................ GCGAGGTTCTGGAGGACGTGAGTCGCCAGACC 1047 28 100.0 32 ............................ AGCTACATGAAGAAAATCCCGCTGATCATCGC 987 28 100.0 32 ............................ ATCCGCACCGCCAGTCGCCTCCTCAGCGGCCA 927 28 100.0 32 ............................ AGGAAGAACAGCAGCAAGCGGCGGCGGAAGAA 867 28 100.0 32 ............................ TGGCTGATCGACGACGCCAAGCCCCTCACCCG 807 28 100.0 32 ............................ GTCGCTCATCCTGACGACCGTCGCACCGAACA 747 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 687 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 627 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 567 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 507 28 100.0 32 ............................ TGGAACCCGGAGAAGGACGGCAGCCCCACCGA 447 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 387 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218-965 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXTW01000081.1 Pseudomonas aeruginosa strain MRSN435288 MRSN435288A_contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 218 28 100.0 32 ............................ TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 278 28 100.0 32 ............................ TGCGTGTCCAAGGCGATCCCGGCCGCGTAGTC 338 28 100.0 32 ............................ ATCGTTACCGAACACCCGTTGCGCTTCGTCGA 398 28 100.0 32 ............................ TGGGCGGCGAAGACAGCATCTTCATGGGCGTC 458 28 100.0 32 ............................ TACGAGAAAACGTTCGACAACACCATTCCCGC 518 28 100.0 32 ............................ AGCGAGCCGCTCGACTGGTCGCTGCTGAACTC 578 28 100.0 32 ............................ AACAAGGCCCGGTCCTGACGATGAGCAGTCGC 638 28 100.0 32 ............................ GAGCAGCAACGCCGCGCATCGCCGCCTCGAAC 698 28 100.0 32 ............................ AATACATCATCGATGTTGTTGTGGCCGATCTA 758 28 100.0 32 ............................ ACTTGTCGAACTCGGCGCGGGTGGAGAAATAG 818 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 878 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 938 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10486-9498 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXTW01000081.1 Pseudomonas aeruginosa strain MRSN435288 MRSN435288A_contig00081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10485 28 100.0 32 ............................ GTTAACGACGCGGTAGTGCAACTTGCCAAGGC 10425 28 100.0 32 ............................ AGCCCCCAAAAGCCCCAGGATCGCCAGAACGA 10365 28 100.0 32 ............................ TATCGCCATGGTTACGTCACTCATCGCTGACT 10305 28 100.0 32 ............................ GTCCTGCGATGGCTCCATCTCGATTGCGCCGG 10245 28 100.0 32 ............................ TCCAGGGGATCGGGCCTGCGTTTGGGAACCCG 10185 28 100.0 32 ............................ CAGGCGTGCGTAGATCCAGGCGAACTTCGCCC 10125 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 10065 28 100.0 32 ............................ ACCATAGGGCCGAATGAAGTTGATGTGCTTGC 10005 28 100.0 32 ............................ ATACAGGCCGTGACGGCCAACAACCCTACTGG 9945 28 100.0 32 ............................ TTGAGGCCTGACCATGACGACCCCGAACGATT 9885 28 100.0 32 ............................ TGACGCGATGCCTCATGCACGCCACGCGGCAG 9825 28 100.0 32 ............................ CTCGTACGAGACCGAGCGGATCACCATGCCTG 9765 28 100.0 32 ............................ TGTAGCCCCTCACCGGGTAGTCCGAGACTATG 9705 28 100.0 32 ............................ TACGATGCAGCCAAGGGCCGGCTCGCCCAAAT 9645 28 100.0 32 ............................ AAAGTAAAAGTCGAAGCCAGACTTCATACAGC 9585 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9525 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //