Array 1 296469-298276 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAN01000002.1 Salinivibrio sp. VYel4 NODE_2_length_567150_cov_157.326856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 296469 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 296529 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 296589 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 296649 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 296709 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 296769 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 296829 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 296889 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 296949 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 297009 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 297069 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 297243 27 89.3 32 ....T..-A................... AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [297245] 297303 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 297363 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 297423 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 297483 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 297543 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 297603 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 297663 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 297723 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 297783 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 297843 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 297903 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 297963 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 298023 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 298084 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 298248 28 67.9 0 ..C...CTA.......A....G...GTG | G [298252] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 27 28 95.5 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCATTGAAGTTGGATACATAAAACCCCTTTGTAACCCTTCTTTTGGGGAGGTTTAAAAATAATCATTAAATACAAAGAGTTGTGGAAGGCCATTTTAAACAAGGGTAAAAGAGCATTTTTATCCTAACAGCCTGTTGTTCCGAGCTATTATTACGTTATTCTATT # Right flank : GACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 300200-301067 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAN01000002.1 Salinivibrio sp. VYel4 NODE_2_length_567150_cov_157.326856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 300200 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 300260 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 300320 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 300380 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 300440 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 300500 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 300560 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 300620 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 300680 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 300740 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 300800 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 300860 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 300920 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 300980 28 100.0 32 ............................ TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 301040 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 311845-312593 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAN01000002.1 Salinivibrio sp. VYel4 NODE_2_length_567150_cov_157.326856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 311845 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 311905 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 311965 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 312025 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 312085 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 312145 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 312205 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 312265 28 100.0 32 ............................ TCGCCTAGAGCAAGCAGTGGATAGTCTAGCGT 312325 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 312385 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 312445 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 312505 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 312566 28 78.6 0 ...G.........T.......G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : GACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTTATGCCATTGACGAAGGAGGCTTCGCAAACCAAAACTGGCCTCAAATGAAGCCAGTTTTGCTCGTATTAAACCTTTGAATATGCGAGTGTTATACGATACGTCGCCGAAAGAGGCGGTGTCCCACGGCATTGAACAACGCGCCAGCGACAATTAACCCGCCACCGATATATGTCCAGATCGAGGGCACTTCGTTAAATATCCATACCCCAATTAATGTCGAGAACACGATTTGAATATAGGCGTAGGCAGAGGCTTGTCCCGCCTGTTGGGTTTGCATCGCTTTAGTTAAGCCGTATTGGCCAACTTGGGTAAAGACGCCGACTAACACCAACAGCAAGGTCAGTGACAGGCTGGGCAGTACAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //