Array 1 165752-166982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGER010000006.1 Pectobacterium brasiliense strain IPO:4131 NAK:399 JGAR:16 180717-4 DFGFFOBJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165752 28 100.0 32 ............................ ACGGAGAGAATCATAGAATGAATCTGTTCCAT 165812 28 100.0 33 ............................ GTTCAATCGCCTCCTGAAACAGGCATCTCGCAA 165873 28 100.0 32 ............................ GCCACACAGCGCGAACTGGCGAAAGTTGCTAT 165933 28 100.0 33 ............................ TGATTGATCCCGTGGTTTGCCATAATGTTTTTC 165994 28 100.0 32 ............................ AGGCTGCGGACGAACAATCAACCGAGGCCATC 166054 28 100.0 32 ............................ CTAGCTACCCGTCAGATTCAGGAAAACACCCC 166114 28 100.0 32 ............................ AATGGGTGACGCCGCAAATGCACTGTTGAGCA 166174 28 100.0 32 ............................ AATTGAAACCACACAGCCTGCTTTCCAGCAGC 166234 28 100.0 32 ............................ GACAGAATCCAGAGCATCAGTGAATAATGGAT 166294 28 100.0 33 ............................ CGCAAATCTTCGCTAACCCGTTCCAGATTCAGC 166355 28 100.0 32 ............................ AGTGCCAAAACATGATGTGCGGTCATTGCTTT 166415 28 100.0 32 ............................ TGTACGGTGCCAACCTGCACGGTGCCGACCTG 166475 28 100.0 32 ............................ TGCCGCCTGGTACGTTCAGTGCTAAACGGTGG 166535 28 100.0 32 ............................ ATTGAGCAGAAAGTGAACTTTGCCCGCAACAT 166595 28 100.0 32 ............................ GATGGTGGTATCCATCAGCCCCTCTTTACCCC 166655 28 100.0 32 ............................ AAGCAACAAATCGCGTACCTCGGCGTTAAATA 166715 28 100.0 32 ............................ GGAAAGCCCGTTGTGGCTTGGCAGGACGGGGG 166775 28 96.4 31 ...........C................ TAGAAAATTCATGTTCTGTGATTTCAGCCTG G [166801] 166835 28 85.7 32 .G......T..C.....T.......... CACGGAACCAGCGGCAGCTTGCCCGCATCAAC 166895 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 166955 28 92.9 0 .............C........A..... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGTACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCACAGCATATGCAGATACCTGACATAGGCCTATCTTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTACGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173501-174313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGER010000006.1 Pectobacterium brasiliense strain IPO:4131 NAK:399 JGAR:16 180717-4 DFGFFOBJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173501 27 89.3 32 T.........-...C............. TTCTTCTGCTCAAGAAGAGTCTTTCGTTGATA TA,G,C [173504,173507,173517] 173564 28 96.4 32 ...........C................ ACATCGAGTAACACGTAGAGCAAGTCACTCGA 173624 28 96.4 33 ...........C................ GTGGCGGGCAACAACTTCCAGCCAGTTTTTTAA 173685 28 96.4 32 ...........C................ CTGATTCACGTAGATAGCTCATTTGACACAGT 173745 28 100.0 33 ............................ AGATGAAAGTAACGCCAGACGTCAAATTCAACA 173806 28 100.0 32 ............................ GTTCTCCCTGACGAAATCAGCGAGAGTTTGTT 173866 28 100.0 32 ............................ TCGGGGCCGCGCTGGTTGCTGTGGGATTCGTG 173926 28 100.0 32 ............................ TTGTCGCGTGAGGGGATCAGTGTGTTCGGTTT 173986 28 100.0 33 ............................ CCCGTACAGCGGAGGTGAGGCTATGACCAAGAT 174047 28 100.0 32 ............................ GTGTTATCGAATCACTAAAGCAATGGCAGGCC 174107 28 100.0 32 ............................ AGTTTCAGACGGCTGGTGCTCTCACACATACC 174167 28 100.0 32 ............................ ACGACCATTGCTCGGACTGGTCTTCCGAAACC 174227 28 96.4 32 ...........G................ GGGTCGAAAGCATCATTACCACGCAACCCTAA 174287 27 82.1 0 ...........G........-.G.AC.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCATTCTCGATACGTTCATTTTCTAAGCTGCCTGTTCGGCAGTGAACCAAAGCCGATACTGATCGGTGTGATTATACGATTTCTAAGCTGCCTAACCGGCAGTGAACGGCGACGTTCACGCGTTATTTTCACATCGGCATTTCTAAGCTGCCTATGCGGCAGTGAACCGAAAAGGACATTTCTGATGCTGTCCGCGACTTTTCTAAGCTGCCTATGCGGCAGTGAACCGGGATTGCCTGGAGCGCCAACAACTGATCGCTTTCTAAGCTGCCTATGCGGCAGTGAACGTTGGGCGAACGTGAAGAATAATGATGTTGAATTTCTAAGCTGCCTATACGGCAGTGAACGACAGACGGCGAATATCATCGCGCTCGTAAGTTTTCTAAGCTGCCTATACGGCAGTGAACCTTTTCTGCCCTGCAAAGAGCGTCACCGTACTTTTCTAAGCTGCCTATGCGGCAGTGAACGGTACGCCACAGCGTCGGAAGCGCTTTTTCAT # Right flank : AGGAAAGGATAGCCTTGAAGGTCGCGGTAACTTTCTAAGCTGCCTATGCGGCAGTGAACACCGATCCGAGTCGTTTTTCATTGGGCAGCATTTTCTAAGCTGCCTATGCGGCAGTGAACGCGTATCCAATTCTGGCAAGCCGGTACCCGTCTTTCTAAGCTGCCTATGCGGCAGTGAACAAGGGATGGTTTACCGGGCAGTGGCGAGAGGTTTTCTAAGCTGCCTATGCGGCAGTGAACTTATTTTCCATCTTATGCTGCCTCTACCGGTCTTTCTAAGCTGCCTATGCGGCAGTGAACTTTTTTCTACTAACGTATCTCCTGCAAATGCTTTTCTAAGCTGCCTATGCGGCAGTGAACTCCGAACTTTTTTCTCACGTTCTGCGTGTTCGTTTCTAAGCTGCCTATGCGGCAGTGAACAAGCACAGATGGTGAAGCTGACGGAGGAAACTTTTCTAAGCTGCCTATGCGGCAGTGAACGACAGACTCTTCCTATCGCTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 175572-174344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGER010000006.1 Pectobacterium brasiliense strain IPO:4131 NAK:399 JGAR:16 180717-4 DFGFFOBJ_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175571 28 100.0 32 ............................ AACCGAGCGCCCGGGCCCAGATAACCACGGCA 175511 28 100.0 32 ............................ CTGTAGCGGGAGACATTGGGTGGATTGCCGTT 175451 28 100.0 32 ............................ AGCGACTTCAATTCGCCAGATTTAATCTTGGC 175391 28 100.0 32 ............................ AGAATGAGAGAGCTATCGCGCCGATATTAGTA 175331 28 100.0 32 ............................ AGATCCTCAAGAGACGTTTACCAATATTTCTG 175271 28 100.0 32 ............................ AGCAAGATTAGAGGCAGTTTGTGAGATTAACT 175211 28 100.0 32 ............................ TTTATCTGCATTACAAGAAATGGGTGGCTGGG 175151 28 100.0 32 ............................ ACCTGAAGTTCCGGGCCGAACGCCAACGTATC 175091 28 100.0 32 ............................ TGCAGATTTGAACGGCAGCATCTTTGGTATGC 175031 28 100.0 32 ............................ TACAGAACATTCAATTAGCCACAACCTCAAGG 174971 28 100.0 32 ............................ ATATACCAGCCAGACTTATGAGCAGTACGGAG 174911 28 100.0 32 ............................ GGACTTATGAGCAGTACGGAGAGCAGAAAGTA 174851 28 100.0 32 ............................ AGCGTAACGCATAGCGATAGGAAGAGTCTGTC 174791 28 100.0 32 ............................ AGTTTCCTCCGTCAGCTTCACCATCTGTGCTT 174731 28 100.0 32 ............................ CGAACACGCAGAACGTGAGAAAAAAGTTCGGA 174671 28 100.0 32 ............................ AGCATTTGCAGGAGATACGTTAGTAGAAAAAA 174611 28 100.0 32 ............................ GACCGGTAGAGGCAGCATAAGATGGAAAATAA 174551 28 100.0 32 ............................ ACCTCTCGCCACTGCCCGGTAAACCATCCCTT 174491 28 100.0 32 ............................ GACGGGTACCGGCTTGCCAGAATTGGATACGC 174431 28 100.0 32 ............................ ATGCTGCCCAATGAAAAACGACTCGGATCGGT 174371 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACTACGGTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGATTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : GTTACCGCGACCTTCAAGGCTATCCTTTCCTTGTTCACTGCCTATCCGGCAGTGAACTTAGGGTTGCGTGGTAATGATGCTTTCGACCCTTTCTAAGCTGCCTATCCGGCAGTGAACGGTTTCGGAAGACCAGTCCGAGCAATGGTCGTTTTCTAAGCTGCCTATACGGCAGTGAACGGTATGTGTGAGAGCACCAGCCGTCTGAAACTTTTCTAAGCTGCCTATACGGCAGTGAACGGCCTGCCATTGCTTTAGTGATTCGATAACACTTTCTAAGCTGCCTATACGGCAGTGAACATCTTGGTCATAGCCTCACCTCCGCTGTACGGGTTTCTAAGCTGCCTATACGGCAGTGAACAAACCGAACACACTGATCCCCTCACGCGACAATTTCTAAGCTGCCTATACGGCAGTGAACCACGAATCCCACAGCAACCAGCGCGGCCCCGATTTCTAAGCTGCCTATACGGCAGTGAACAACAAACTCTCGCTGATTTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 184519-185146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGER010000006.1 Pectobacterium brasiliense strain IPO:4131 NAK:399 JGAR:16 180717-4 DFGFFOBJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184519 28 100.0 32 ............................ CAGTCATTCGGACTTTGAAAGCTCGGCTGATT 184579 28 100.0 32 ............................ TCCGTTATACATCCAGTGAGTTACATTGCCAT 184639 28 100.0 32 ............................ CGTTCATCACAATGTCATCGACGATAGGAACC 184699 28 100.0 32 ............................ CTAAGCATAAATTTGTGTTCGCTGCTGAACGT 184759 28 100.0 32 ............................ GTCAGATCATGTGCGGTTTCCGGCATCGCCAT 184819 28 96.4 32 ..........G................. GTCCGCCCATCGACCGCTGTATGAGTCCCTGG 184879 28 89.3 32 .........TGC................ ATACAGAAAGGCTTCATTAGCCGGCCGCTGTT 184939 28 92.9 32 ..........GC................ TGCCACCGGACCAGATGAAGGGGACCGCCAGT 184999 28 89.3 32 ........T.GC................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 185059 28 89.3 32 ..........G....A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 185119 28 78.6 0 ..........G..C........CG.CG. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.2 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATAGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : ATTATCGGGATGCGTCGCTGGCGCGACGCATTCTTGAGGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATATTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACATTTATCTGACGCAATCCAGTAACCTGCACCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //