Array 1 1-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUX01000083.1 Pseudomonas aeruginosa strain 549782 contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 61 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 121 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 181 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 241 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 301 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9601-8853 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUX01000083.1 Pseudomonas aeruginosa strain 549782 contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9600 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 9540 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 9480 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 9420 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 9360 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 9300 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 9240 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 9180 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 9120 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 9060 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 9000 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 8940 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 8880 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATAGGCAGCTAAGAAAAAGGACTCTGATCTCTTGACTCACCATTTCC # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 378-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUX01000154.1 Pseudomonas aeruginosa strain 549782 contig_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 377 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 317 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 256 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 196 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 136 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATCCTCAAGTTTTGTCAGCCGAGCCAGCATTTCGTTCACTGCCGTGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //