Array 1 200391-206824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044205.1 Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200391 29 100.0 32 ............................. GCTAGTGTGGCGTTTGTTGCTGTTACCCCAAA 200452 29 100.0 32 ............................. CGTGTCGCCATCTTTCGTGAAACCTGCCGGGA 200513 29 100.0 32 ............................. TTATCCCACACTCAATGGAAAAGGCGACAGTC 200574 29 100.0 32 ............................. GCCGACGTGGTACACGCGATTATCGCGGCAGG 200635 29 100.0 32 ............................. TTATCCCACACTCAATGGAAAAGGCAAATCTA 200696 29 100.0 32 ............................. GCATGTCGATGTATCCGCTCGCCAGCGCCATC 200757 29 100.0 32 ............................. GGGCTTTATCCCAGAGACGAGAAACGAATTCA 200818 29 100.0 32 ............................. TCGTCGGCCCGAAGCCGGCGCGGCGTATGACG 200879 29 96.6 32 ............................A GAACCAGGAGGATGCCGCAGCTTATCGTTCTC 200940 29 100.0 32 ............................. GCTGGCAGCCGGTGAAAACGAATAGAATGCCG 201001 29 100.0 32 ............................. TATGGGTATGAGGTTAATAGAACTAATCCACA 201062 29 100.0 32 ............................. AACATACACTTCTGGTGATATTCACATCAGAA 201123 29 100.0 32 ............................. TCATCAATTCTACATGTGAGATCATCTAATGT 201184 29 100.0 32 ............................. GTTGAGGCTATCATAATGATAGCCTCCCGAAA 201245 29 100.0 32 ............................. AATGCCATTGAATGGTTTCAAAATACGCTTGA 201306 29 100.0 32 ............................. CACATGGAAAGCCGCAGGAGACCATAGAAAAA 201367 29 100.0 32 ............................. AAATGCGCGTGTCGCCCACCATTCAATATCAA 201428 29 100.0 32 ............................. ACCTGATGCCTGCTCTCGCGTCCATCCCATAG 201489 29 100.0 32 ............................. TTGATTGCTGGCGAAATACCAGAGAAAGAGCG 201550 29 100.0 32 ............................. TGGCATCCGACATAAACCCAGCATCAACAGAT 201611 29 100.0 32 ............................. CCCCTCAAGCGTTTTATTCGGGTCGAGATATA 201672 29 100.0 32 ............................. GATTCGCAATGAAAACTCACGATTTAATACAG 201733 29 100.0 32 ............................. ATTCCCACGCAGCGTCAGTCCAATCAAAACTT 201794 29 100.0 32 ............................. GATTGCTGTCGGCGGAGGCGCTGATGGCGGCG 201855 29 100.0 32 ............................. CCTCCCGTTCCTGGGCAAGATCAATGCTGTCC 201916 29 100.0 32 ............................. TCGATGCCGGGCGTGGGCGATGCCGATGGCGG 201977 29 100.0 32 ............................. ATCGAGCGGCTCTGTCCGCATCCAGATCCAAC 202038 29 100.0 32 ............................. GGAGGATTGGTCATGGATGACGCACCCTATCA 202099 29 100.0 32 ............................. CTAACCGGCCCGTCTTGCGACGGCCCCACGCC 202160 29 100.0 32 ............................. ATTGTCAGCCATGCCGGAAGACGCAGAGGTTA 202221 29 100.0 32 ............................. CAAACGGCGCGGGGTGAACTATGACCGAACAA 202282 29 100.0 32 ............................. CACCTCGATTTATACCAACGACCGCGATACCT 202343 29 100.0 32 ............................. TAATAGCACACAACCGGCATCGTATAGCCGTC 202404 29 100.0 32 ............................. GCGACTCTTGCTGGAGCAACAGATGAGCCTGT 202465 29 100.0 32 ............................. TCATCGTTTGATTAAAACCTAGTTATGGCGCT 202526 29 100.0 32 ............................. AGTTGAAAGAGTTGTGGCGCGGGCTAAATGAA 202587 29 100.0 32 ............................. CCATTGCTTCCTCTTCTGTTGGATTCTCTGGA 202648 29 100.0 32 ............................. AGTGTGGTTATGATTTTGTTGTTAAACTGAAT 202709 29 100.0 32 ............................. CTGTGAATGGGATTGCGACAACACCAGCTGGA 202770 29 100.0 32 ............................. GTCTATGGCGGGCGCATGGGCAATTCCGGGCC 202831 29 100.0 32 ............................. CTTGCGCGAGTATCCACATTAATGCGCGAATC 202892 29 100.0 32 ............................. AACACTGACGGTGCAACGGGACGAATCGACCG 202953 29 96.6 32 ............................C CATAATGACCGCCCGTTAAATAGTGATCGCCC 203014 29 100.0 32 ............................. TTATCCTACCCCTCCGTTCGGAGTCGGTTAAC 203075 29 100.0 32 ............................. GCGTCCGCCAGTCCGTGGGCGTGTTTTCCCAG 203136 29 100.0 32 ............................. CCGCACGTTCTTCATCGCGCTGGATCGTCCAG 203197 29 100.0 33 ............................. CTGGGATGAATCGTCATGGCACCCGATTGATCC 203259 29 100.0 32 ............................. GCCATTATTGATGCGGGGCGCATCAATAAAAC 203320 29 100.0 32 ............................. GCATGGAGGCAGGATCATGCGGCGTGAAGATC 203381 29 100.0 32 ............................. ACTGGATTTGCTGCACGCGCTGGTTTGTCAGC 203442 29 100.0 32 ............................. CATCCGCCCATGACGACGGTTGCGCGGATGAA 203503 29 100.0 32 ............................. GGTAAGAACAAGGATCAAATCAGACAATTGGT 203564 29 100.0 32 ............................. CCACCATGCTACCCGATATTCCCATGGGTGGA 203625 29 100.0 32 ............................. CATCATCTTTTCCCGGCGGCGCTTGAATAATC 203686 29 100.0 32 ............................. CGCAGCGCCGTTTCGGCATATCGCGTTCGCGC 203747 29 100.0 32 ............................. CGCAGCGCCGTTTCGGCATATCGCGTTCGCGC 203808 29 100.0 32 ............................. CAACCCCCTATGTTCAAACGGGATGGACGCGC 203869 29 100.0 32 ............................. AGCATGGAAAAGGAGAGCGTCGATGGCTCGTA 203930 29 100.0 32 ............................. TCGGATCACCCGGCGTTCACCGGTTTGGTGAT 203991 29 100.0 32 ............................. GTTATGGTTTCGTCCACAATCGCGTGCAACGC 204052 29 100.0 32 ............................. ACGCGTCCGCCATCGCTGCTACTGCGGCTCCT 204113 29 100.0 32 ............................. TCCGAAAAAATCTCGCGCATCTCTGGAATATC 204174 29 96.6 32 ............................A GCGGCGCATATGGGTTTCGAACTCGCGGTAAC 204235 29 100.0 32 ............................. TTGACGAGCAGATTGCGGAACTGCACCGCCAA 204296 29 100.0 32 ............................. GGTTCAGCCATTACGTTCCTCTGTTGTGCAGC 204357 29 100.0 32 ............................. ACGTATAGACAATCATATGCCCAATGTCAAAA 204418 29 100.0 32 ............................. ACAGGGCAGCAAGCGCCCTGTCCTTCTACTTC 204479 29 100.0 32 ............................. CTACAGATGCGGTAAGAAATATTTTGTCTCAA 204540 29 100.0 32 ............................. GAGAAAACATGGTTACTGAAACTCAACGTAAA 204601 29 100.0 32 ............................. ACCATCGACAAACTTTATGCGACCGTTCAGAA 204662 29 96.6 32 ...............A............. GCTAACCGGAACCTGAGACGGGTCAAGGTAAG 204723 29 100.0 32 ............................. TATGATTGTAAGCTGTACCGCTTGTTCCAGAT 204784 29 100.0 32 ............................. ACTTGATGAGTATCGGTGAGGACTAAGCCAGG 204845 29 100.0 32 ............................. GCCCGTTCAGCATGAAAAACCTCATGATTATC 204906 29 100.0 32 ............................. CGTTCTTACCCGTTTTCGTGGTCCAGCTATGC 204967 29 100.0 32 ............................. CAACTGCCGCAAGAGAAAACAATAGAACTTTA 205028 29 100.0 32 ............................. GTGTTAGGGTCTACCGTACAGAAAGATAAGCG 205089 29 100.0 32 ............................. TAAAATCATATTATACAAGAGTTTAAAAATAT 205150 29 96.6 32 ............................T GCTATGAAAATAGCCCCTACCGGAAGTATCAA 205211 29 100.0 32 ............................. GGTATCGGCTGCGCGAATGGCTGCTGCCTATG 205272 29 100.0 32 ............................. CTTCCGCATCCATGCGCGTGAAGAATGCGATG 205333 29 96.6 32 ............................A GAATTCGGCGCTGCGTCGGCCGTTGAGGTTGC 205394 29 100.0 32 ............................. GCGGATGGTGGTGACCGCGCCGCCGTTGGGCA 205455 29 100.0 32 ............................. GTTTCATTCCCGCCCAAGGGTGCGACGCTGCA 205516 29 100.0 32 ............................. CTGAACCTGCAGTTGTCAAAGCGCCTGTTGAT 205577 29 100.0 32 ............................. TTTCAAATCAGTAGCAACAGCGCTTTATTTAT 205638 29 100.0 32 ............................. ACATCGCCATCATCGCCGCCTACATGGATCAG 205699 29 96.6 32 ..........T.................. CCGGGTAATCATCGGCGGTCTGGGGCCGGTGA 205760 29 100.0 32 ............................. AGGTAGAAACATCGGCTAACGGAAGTATGCAC 205821 29 100.0 32 ............................. CCCGTGGAATCGTGCAAAATTGGCCAACTGTG 205882 29 100.0 32 ............................. GATGATGACGATAAACAACAGCAATCGATACA 205943 29 100.0 32 ............................. CGACAAACACGCCGAAAAAATAGTGCTGCACG 206004 29 100.0 32 ............................. CAAATGGTACGCGGGCTGCTTGGATTAGTTGT 206065 29 100.0 32 ............................. CTGGATGGTGGTTCAGCGGCGGCGCTGATCGC 206126 29 100.0 32 ............................. ACAGTGGCGTTCGAGTGGCTTACCGGAAGTGA 206187 29 100.0 32 ............................. AATATTTGAGAGTCGCGCAACTTACCAGCGGC 206248 29 100.0 32 ............................. CAGCAGAGGCGTTTCTCGACTCTCAAGCGTCC 206309 29 100.0 32 ............................. TTATCATCAGATCCAGAATCGCCCTATGACGG 206370 29 100.0 32 ............................. CGGCACTATCGCCCTCTATATCGGCGGTCAGC 206431 29 96.6 32 ............................C GGAGAACATGCCGGACGCAACCCGCATATTCT 206492 29 96.6 32 ............................A ATTGCTTTTGTTGTATCGGCAACAATCGGAAT 206553 29 96.6 32 ..........................G.. ATTTGCAGCTCTGTCATGCTGTGCTCTATTCC 206614 29 100.0 32 ............................. GCCCAATATGGCAGTTCTAACCACCTCCGGGC 206675 29 100.0 32 ............................. GGCGATAGCAGCGGCGTCAGTCAAATACTCGC 206736 29 96.6 32 ...........T................. TCCAGCAAGATGTTGCGGTACTTTTTGTTGGA 206797 28 86.2 0 .T.........A...-............A | ========== ====== ====== ====== ============================= ================================= ================== 106 29 99.5 32 GCGTTCCCCACGCCAGTGGGGATGAACCG # Left flank : CCGTGGAGCCCGCCATTCCGAACCCCGAGAGCCTGGGCGATGCTGGTCATCGTAGTTGAAAACGCGCCGCCGCGTTTGCGCGGGCGTCTTGCGGTTTGGCTGATAGAAATCCGCGCCGGTGTTTACGTGGGCGACTTGTCGAAAAAAGTGCGGGAAATGATTTGGTCGCAAGTTGCCGGAGGATTGGAAGATGGGAACGCCGTTATGACCTGGAGCACCAACACCGAGTCAGGCTTCGATTTCGCCACGCTGGGTAAAAACCGGCGCATGCCGGTTGAGCTTGACGGCATCAAATTGGTATCGTTCCATCCGCCCGAACCGGCCGATAATCCTAAAACCTGATAAATGAATAAAAACCGTTTGGTAAAATGCATAAACGGCTCTTTAAAAAAATGCAAGTTATTGATTGATGGCGCTATTGTTTTTGCGAAATATGGGGTTTTATTCGGTAAAATCTGAAAGCGTAAAATTTTTAGTTGTGCCAATAGTTTACAATTAGT # Right flank : ACTGTTCATCAGTGTTGCGAATCAGCTAAGGCTCAATACGGATATCAGCGGCTTGGGAGACAAGCGTTTGCAATAGCGCATGCAGTAAAGATTTTCCACGTTTCTTCATGTTATGCACAAATTCGAAAGGTTCAGTCGGCAGGCGAGACCGGCTGTTTTCTGCATACCCTGAAACTTAGCCGGTATGCTATGCGGGCGGCTTCATCTATCGTTTCGGTATTTGCGGAACCGGCCCGCGTTTTTCAATATCCCAATCAACACTTTCCAAAACATCGATTAAACGTGTCTGGTATCATCCTCTTCAGCCGATAATATCGAAACGGAGAATACGTCATGACCCGAGTTTTAGGCCTGCTGGTTGCCACCTTTATTGCTTATTTGTTGTATCACCTGTCGCGCGTTGCGACGCGCCCGGACGCTGAAAATACCGTAGCGGACGCTGTTGCGTTGCCGCCGGCAGCGAAACCGGAACCTGTCGAGCAAAGCGCGGCGGTCGAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGCCAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1255627-1257876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044205.1 Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1255627 37 100.0 33 ..................................... TCCATCCAGGCGCTGTAACGCATCGCGCGCTAC 1255697 37 100.0 34 ..................................... GATGCATTCAGCACCAGTGCGCCACTTCTTTTGA 1255768 37 100.0 35 ..................................... GTTTGCAAGTATGCATTTTGAGATGATTCCATCGC 1255840 37 100.0 34 ..................................... TCGCAGGTAATGCCGCAAATTGCAGTGGCATGTT 1255911 37 100.0 35 ..................................... ATGCCATATCCGGGTATCTGATAAGTGGCACATGG 1255983 37 100.0 34 ..................................... GCCGTAGTCGGTGGTAACACATCAGTGATATGTC 1256054 37 100.0 35 ..................................... AAATCATTGATAACAGCGCTCACAACCATTTTATT 1256126 37 100.0 34 ..................................... CATTGTCTTGCAACTCATTATCCGACATAGCCAC 1256197 37 100.0 34 ..................................... TCCAGGATGGAGATATTATGAACGTGCTTCATTA 1256268 37 100.0 34 ..................................... AACAGTATGAGTGGCGTTCCGGTGAGTCGGATGA 1256339 37 100.0 35 ..................................... GTGCTCGCAGCGGTGCAGCAAAACGGCTATGCGCT 1256411 37 100.0 35 ..................................... AGTCAGCGGACTACATGACCGTATGGACGATCAAC 1256483 37 100.0 35 ..................................... GTCGGTCCATCGAAGGCAAAGCTGTCGCGAATTTG 1256555 37 100.0 35 ..................................... AATTCCAGAGTCAGCAATCGTTGCTTTAGCGGCCA 1256627 37 100.0 35 ..................................... TGCGCGAACTGGACGGGGACCACCTTGCTGCAACG 1256699 37 100.0 34 ..................................... ATGTAACCCGCTTCCGCATGAGCACCCATCCGGT 1256770 37 100.0 34 ..................................... TTATGCCTTCAGCCGTTCCACCTGCTCGGTCGGC 1256841 37 100.0 34 ..................................... TCCAATATGCTTCTTCAATGCCTAACTCAGTTTG 1256912 37 100.0 35 ..................................... ATGTCTATCGAAATGACGGACGCCTTCAGCAAAGA 1256984 37 100.0 34 ..................................... TTGCAAAAACTGTTGAATAGCAGTTATCAGTAAA 1257055 37 100.0 35 ..................................... TGTAATCAATATCTATGCGAATTCCTTCGAACAAA 1257127 37 100.0 34 ..................................... CTATTAACTTCGGGGCGATTACGCCCGGCGTTCC 1257198 37 100.0 34 ..................................... TCAAAATAAGGCAATTTTGGGACGGTTTTAAAAA 1257269 37 100.0 36 ..................................... ATGTCAACGCCGATCATGGCGGCGTTTTGCGCGTTC 1257342 37 100.0 34 ..................................... TATGAAGTTTGCCCAATAGAAGTGACCGAAGGCC 1257413 37 100.0 34 ..................................... CCACAAACCACGTGTCATTATTCGCTTTCATTTC 1257484 37 100.0 35 ..................................... GAATCAAGCGTAGCCGATATTACTGCCCCGGCTGG 1257556 37 100.0 34 ..................................... TATGTCATAGTCATATCCTGATTATCCGTACAAT 1257627 37 100.0 33 ..................................... CCCAAGCATCGAACATTCCAATTTGCGAATGAT 1257697 37 100.0 34 ..................................... CCGCCTAAAAAGAGAAAACTTAAAAGCGGAAAGG 1257768 37 100.0 35 ..................................... AAGCGCTGGCTGGTGTCGCTGGGCTGGACGCCAAC 1257840 37 94.6 0 ..............................C.....T | ========== ====== ====== ====== ===================================== ==================================== ================== 32 37 99.8 34 GCATCTCCCGGCATTTATGCCGGGAGTGGATTGAAAC # Left flank : ACAAGGCTGTTTTTTACGGAGGGCGATAGATGTTGATTCTGGTGTCTTACGACGTATCCACGGAAACATCCGCCGGGCGCAGACGCCTGCGCCGCGTCGCCAAAGTCTGCCTGAATTACGGGCAGCGCGTGCAAAAATCGGTGTTCGAGTGCCAAGTGAATCTGGCGCAAATGGAAATGCTGAAAAATGAATTGCTGGATGAAATCAACGAAGCTGAAGATTGTCTACGGCTTTATCGAATCATAGAGCCGCTGGAGAAAAATCTGATGGAGTTTGGTAAATTCAAGGCTGTGGACTTCGAAAGTACGCTTATCGTCTGATTTGCGCGAACCATAAGCGACGCCTATATTCCTGTGATGTTCGCGCATTGATTAATTGGTTGATTTTAAATAATATTTTTCTATATATCACTATGGGAATGTCTTCGCTTCCCCTCCCGAAAATGTATTCGCGCTTTTCTTCTTGTTTTTTAAGTATTATCATACACCTGCAGCAAGGCT # Right flank : TATGGCATAAATGTCAGCTTTTCCTTGGATTTAGGGCGTAACGATCAAATGGCTGTTAATCATGTACAAGCCTTCTCTGAGTGTGGTTTCCGACGAGGTAATTTCACTTTGTACCTTTTTCGCGGATGTTACCGCGCTGGATATTAAAACCTCATCCCTGTGTACGGATTGCTGAGTTCTATGAAGGCTGAAATTCATGTCGATAACGGCGCTATTGGTGGCGCTGATGGCGGAGCCTATCTTATCTACGGCAACCTGGGTGCTTTTAATGCCTGTCGTTATATTTTCTATGCTTACCGCGGCGGCGTCCAGCCTGCTTGCAATATCATTAATTCTGGCCTGGCCGTTTATCAGCTTGAGCGTAAAGTGCTGTAGCGACGGACCCGCCTGCAACATGTAGTTGCAACCCAGATTAATCAGGCCGTTGAACGGTCCTATGTTCATCACGAAATTGGGGCCAACATTTGTTACGTTGCTCGCGCCAATATTGTTCACGAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCTCCCGGCATTTATGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.00,-14.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 4653482-4651175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044205.1 Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4653481 28 100.0 32 ............................ AACTGCACGGACGCTTGGTTTCCTCTGCTATG 4653421 28 100.0 32 ............................ AGGTACTTTTAATACCGGACGAGGTGTATGAA 4653361 28 100.0 32 ............................ GTCAAGGGCGAACCGCAAGCCGCATGCGGAGC 4653301 28 100.0 32 ............................ AATACGATGCAACATTTTGAAATGCACTACTC 4653241 28 100.0 32 ............................ AATTCAATTACGCTCGAATGATGAGTCATAAA 4653181 28 100.0 32 ............................ AATAGGAATTTGGTCGCCGCCTCGCGAAAGTT 4653121 28 100.0 31 ............................ GGCATCCGTAACCCACAAGGGCCGCGTGTGG 4653062 28 100.0 32 ............................ TAAACCAGAACCGGAACAAATCCCTGTATCAA 4653002 28 100.0 32 ............................ ATTGCCAGCCATGTGACGCCGCCATCATTCAT 4652942 28 100.0 32 ............................ AGGGATCAAGCGCGTTTTCAGGTCGTCTTCAT 4652882 28 100.0 32 ............................ ACGAAGAGCTGGAAAGCATACAAGAACATGAA 4652822 28 100.0 32 ............................ AAGAAAATTGGCTACGCCGGGAAACTCTTTCG 4652762 28 100.0 32 ............................ ATGGGTAGCTTAGTTCCTCACCTGCTCAACGT 4652702 28 100.0 32 ............................ AAAATGAGCGGCGGCTGTTTCGATTTTCTGTA 4652642 28 100.0 32 ............................ AAGATCAGATTATCAAACAGATCGCGCGAGGT 4652582 28 100.0 32 ............................ ATCGCCAGCAGGGTGAAGCCGCGTTTGGTGAT 4652522 28 100.0 32 ............................ GGAATCGGTGCGCAGCGTGTACGCCCTTCCCG 4652462 28 100.0 32 ............................ ATACGCGCGGCGCAAACTGCGGCATATAGATT 4652402 28 100.0 32 ............................ ATATGGGCATGACTTCATAAGCCGATTATCTT 4652342 28 100.0 32 ............................ AAAAAATTAGGCCTGGAATACGGTGCGCAGCT 4652282 28 100.0 32 ............................ AAGGACGCGAACTATACCGGGGGCGCATTGAC 4652222 28 100.0 32 ............................ ACGCGTCTCCGGAATAGCCGCAACGCATGCAC 4652162 28 100.0 32 ............................ ACTGAGCATGCTGCAAGGTTATTGGATATTTC 4652102 28 100.0 32 ............................ AGCTTGTCGAGCATGTAGGCGGCGCACAGGTC 4652042 28 100.0 32 ............................ TGCATCGCCTCCGGAGCGCGTCCTCTGACCCC 4651982 28 100.0 32 ............................ ATCAAGCGGTAAATCACTCCCTTCTTGCCGAA 4651922 28 100.0 32 ............................ ATCAGCGACACCAACGGATATTGTCGCAGATC 4651862 28 100.0 32 ............................ GTCTACGGTCGCAATCTTGGCATCAACCATTC 4651802 28 100.0 32 ............................ TTGTTATCGAAGAAGCGCACGCGCTCAGCGTA 4651742 28 100.0 32 ............................ AAGGGCAAACATAACCGCTCAGTCGACAGGGT 4651682 28 100.0 32 ............................ ATCGTAGCCACCGGATCAGCGCCGGCATTAAA 4651622 28 96.4 32 ...............A............ CAAACCGTTTATCGTTCCGGTAACACATCATG 4651562 28 100.0 32 ............................ ATGAATATCGCGCTCAACGCGATGAAATCGCT 4651502 28 100.0 32 ............................ TAAAAGGCGAACTGTGGGCGCTCACAGCCGGT 4651442 28 100.0 32 ............................ CACTGACCCTTTGCATGCGTTGGCTGTGCTGG 4651382 28 100.0 32 ............................ TACCCTTCGCCATTCCCTGGCTTCGCCCTATC 4651322 28 100.0 32 ............................ ATTACAACGCCGCTTATTTGCGCATTGATCGT 4651262 28 100.0 32 ............................ TATTACAACGAAAACGATCCATTCGCCGCAGC 4651202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCTCGAACGCTTTAACGCTGCGCAATGGCTGAGCCGTTTCAGCGACTACATCCATTTGACCGGCATCCGTCCCGTACCCGAACGTATCCGCGCCTATGCCTGCTACCCACGCATACAGCCGAAGAGCAGCAAAGCCAGACTGGCGCGTCGCAAGGCGCGACGCGAAAACATCGGCTTCGAACAGGCGCTGGCCGCACTGGAAAACTTTAGCGAACGGCGCGCCGATGCGCCTTATGTGTGGATGAACAGCCAGACCAACGGCGAACGGTTTTGTCTGTTCGTCGGCTACGCCGAGAAACCGGCCCTGGTACAGGCCGGTTTCAGCGCCTACGGTCTAAGCCGGATAAGCAGCGTACCCATTTTTTGACCTTTTCAAATTGCCGTTCTTTAAAAACCAAATCTAATCAATACCTTATATTGAGCGCGATTTTTCATTGGTAAAAATGGATAATTGCGCCCAGCCTATTGATGTATTTATCTTATTTTAATTCGGCGCACA # Right flank : GCAGCAGTTAGCGAACGCCACTCACCCAAAATAGCGATATGTAATGAGATACTTGTCTCTTCTCCGTTCGGAAGGAAACACCGCGTGTCCCGCACTCAACGCCTGTTCGATCTGATCCAGCTTTTGCGCCGCCACCGCTATCCGGTAACCGGGGCGGCGTTGGCCGCCGAGTTGGGCGTCAGTGTGCGCACGCTTTACCGCGATATCGGAACCTTGCAGGCGCAAGGCGCGCATATTGAAGGCGAGCCGGGTCTTGGCTACGTCCTGCGTCCCGGTTTTATGCTGCCGCCGTTGATGTTTTCGGAAGACGAAATCGAAGCGCTGGTGCTGGGTTCGCGCTGGGTGGTCGATCGCGCGGATACCCGGCTCGGTTCCGCTGCGCGTAACGCGCTGGCAAAAATTGCCGCCGTGCTTCCGGGCGATCTGCGGGAAATGCTCGACACTTCCACGCTGCTGATAGGCCCCGGCGCCGACATTCCGGCAGGCGAAGCGGAATTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //