Array 1 1-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEI01000046.1 Serratia sp. Ag1 contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 96.4 33 .T.......................... CAAGCCGCAGCCAACCGCCAGAACCACGCCGCA 62 28 92.9 33 .T..................A....... CAACAAGCTTCCATACGAGAGTGCGCACTGTTT 123 28 96.4 33 ...........A................ TGGCTGACAGGGGCACGAACCTGTCCATACCGG 184 28 100.0 33 ............................ TTGGGTCGTTTTCCCCACCCCGGCATAGCCCTG 245 28 100.0 33 ............................ TTGGTCTCGTTCGGCAATGTTGTTGATGGTGTT 306 27 78.6 0 .T...........T..-C........AG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 94.1 33 GCCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : | # Right flank : GTCAAGCATGACCAAAACCACCGTAGTAACTACCCACCAAAATACGGCTGTCGCAATGACAATGTGAAATAACCTGGCACGGGAGAGTAAGTTGTTCATAGCAACCTCACAGTTTCAACGAGTCAACAGACCAAAACTGCCCTTTAAGATTAACTTTAGTTCGGCACAGCTATTTTTATTTGCAGCAGATCACTCTTTCATTAAATGATAAAAATTTGTCAAAGAAATGTTTTTCTCTCGCGGTATTTTTAACATCAACCAGAGGGCATCAAAGGTTAAAACAAAGTACTGCGCGGAACCTCTATCAGCAGCATACCGGCACGCAATCCCAGAGCGACGTTAGGGTTAGGGAACAGAATCCACTCTTTATCGTGCTGTACCCGGTATGTCTCCCCTGGTTGATCACACAATACCGTTCCCCGTGGCAACTCGGTAAAGTTGGCGGTGTCATCACTCAGATACAGTTTGAAGGCTTCACTGTGCTTAATCAGCGACTGCTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 214138-213211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEI01000002.1 Serratia sp. Ag1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214137 28 100.0 32 ............................ TAATTTACCAACTAAAATAACTTTATTTACGC 214077 28 100.0 32 ............................ TTGATGGCTAGTAGTTTATTTTCTTGCAGCAA 214017 28 100.0 32 ............................ ATCGCCATTGCTTACCGTAATACCAGCATGAT 213957 28 96.4 32 ..........A................. TACACGCCGATTGTAACTAAAGCGGAAGAAAC 213897 28 100.0 32 ............................ TGCTCAAATATTGCTGAAACCAGCCGGTAAAT 213837 28 100.0 32 ............................ ATTAGGTGATGCAGCAGTAAGGTCAAGTCCAG 213777 28 100.0 32 ............................ AACTGGCTAAAACCGACTCGGCCGTCGATCTG 213717 28 100.0 32 ............................ GCAATGATGCTCGGCGGCGTCGTTCAGATGTT 213657 28 92.9 32 ...........CG............... AATTCGAGATAACGTGCGCCCTGGCTGCAATT 213597 28 92.9 32 ...........CG............... CGTGACGGCACAGGCAGCAACAGCGGTGGTGA 213537 28 92.9 32 ...........CG............... ATTCTTTATCAGAACCGCCGCGAGTTTAAATT 213477 28 92.9 32 ...........CG............... TCCAGCCAGCGCAATTCCGTTTTCACTTGGTC 213417 28 92.9 32 ...........CG............... ATAGCAAAAACTGGCGAACCAAGTTCTACCAA 213357 28 92.9 32 ...........CG............... TCAACAACCTGCTGACCACATGCCAGAGCAAT 213297 28 100.0 31 ............................ TTAGAGGACGCGCTCTAGAGCGGTAACCCCC 213238 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGAGGACGGATCTCTGGGCGGCTACGGCATACCCAAGTCACGCTGTTCAAAGCCACACAGATGTCTTCTTATTATCAGGCTTTGGCTGGCGATAAAGTGGCGAGGTTTGGTGAGGACAACGGAGTGGGCGCGGCGTGCGAACAGTTGAACATCGTCCCGCTTGCGTGCAATCACCACAGTATTATCGAACGTGTCAGCGAGATTTGGGCGGTGATAAAACCGCAGCAGTGATGATGAGGTAATGCCACCTTTCTTTATTTAAGAGCGGTGGCATAGATACCCAAGCAACTTGAAATATGAAGGGTATAGAGGGTTAACGAGAGGATATTTCCCATAAACGAATGGGTAAATAGCCAAGATATCGTTGACCCTCTTTTTTTGCCTGCGAATAACATATTGATTTTAAATGGGTAAAAGAAGGCGAGAGAAAAAGGGTTTTTTAGCCTTAAGTGAGGTTACTCAATGATAGTTAACGCGATTAGCGCTATGCTTGAACG # Right flank : CAGGGAAGGTCGCTGCTTGGGTATTGGCTGCGTTACTCGCCCCTGCGGGCCAGTGCCAGCGCTGTTCAAACCGGTCAAAGACCGGTTTGTCACTCAGTTGCTGCCTACAAGCAACTCGAATTATTTTGGGTATTTACCTGGGTTCTTGAACTTTAACTACCGCAACAGCTAATAATCGTAGCGCTACGATTGTTTCTGGAATATGCTTTCCGTATAATTTGCAGCGCTACGATTTAACACCGTGGTGAAAAATCCGGGTGCTGATCCCTAAACCCTAGAACGGAGGCACGTATGCCCAGCGAACATTCCCACCACACTTTTGCCAGCCGCTTGAACGGCTTAACTGCCCCGATTGGCACATGGCTGATGTCGGCTTCGGCGAGCACCGCTGAAGCACTGGGGTACGCAGGCTTTGATTGGCTGTTGGTGGACATGGAACATGTGCCGATCGAATACCGTGACCTGTGGCATCTGCTTCAGGCTATTCAGTGCGGCGGCGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 245774-244186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEI01000002.1 Serratia sp. Ag1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 245773 28 100.0 32 ............................ AAGCAGCTGAAGCGTTGAAGCTGATGGCCAGC 245713 28 100.0 32 ............................ ACTATGAGGCGATTAACTATCTCTTTCGCCTC 245653 28 100.0 32 ............................ TTGCCGCCAACCCTGCACGGTATAGGTCACCT 245593 28 100.0 32 ............................ TGCGTCGGGTGAGCAACCTCTTTGCTGCGTTT 245533 28 100.0 32 ............................ ATGACCCAAAAATATGACTTTAAAGCGCTGAA 245473 28 100.0 32 ............................ TTCCGCCACGTCAGCGCCGATGGCGTAATCCT 245413 28 100.0 32 ............................ ATCCGATGGCATGAGTTCAATTCCAGGACATA 245353 28 100.0 32 ............................ GCCATGGAACGTGCGGGCGGTCGGGCTTATCT 245293 28 100.0 32 ............................ TTGCAGGTAGAGCGGGTTTGGTTTGATGCCAT 245233 28 100.0 32 ............................ TTCAATACTCTGGTACTGGCGAATCATGTCCA 245173 28 100.0 32 ............................ TGCACCCGGCGCATACGTTCCTGAATGACCGG 245113 28 100.0 32 ............................ AGATTGACAGTGATTTCCTGATCCCCTCTGAT 245053 28 100.0 32 ............................ ATTCAGGTATTTAGCCTGTGGAGGATTTGACT 244993 28 92.9 32 ...C........A............... AGAGTATTTTGGGCCACCAGCACCAACCAACA 244933 28 92.9 32 ...C........A............... TACCTGCTGAACAGGCGAGAGCAAATAAAGCG 244873 28 92.9 32 ...C........A............... TTAACTTGCTGCGGCGTTGCCTTTTGCAGACC 244813 28 96.4 32 ...C........................ ATAAGCACTGCCGAGCAAATGCTCAGGTTGCT 244753 28 96.4 32 ...C........................ GGAGATTGCTACAGCGCCAGATATGACTGCGC 244693 28 96.4 32 ...C........................ CGGTTGGCTCAGGGGATGGGATATCGAATAAC 244633 28 92.9 32 ...C........A............... AGCCAGTGGCACGCGCGGTAATGACAGTCCGG 244573 28 92.9 32 ...C........A............... TATCATCGCATGGATTGAACACGGTGACATAA 244513 28 89.3 32 ...C...AT................... CATGCCACCCTGCCCGTGGCCGATGATGTGAT 244453 28 92.9 32 ...C...A.................... GTTAAAGCCCGTCTGCCCAATGCGAGCAATCA 244393 28 96.4 32 ...C........................ TCTCCCAGACGGGAAAAGCTGAATCGGCTATG 244333 28 92.9 32 ...C........A............... CTGAACTGGTCCGGGCATTTGCAAAAATCGGT 244273 28 92.9 32 ...CA....................... TGAGACTGACGCTTTCGAGCGGTCACACAAAC 244213 28 85.7 0 ...C........A.............GT | ========== ====== ====== ====== ============================ ================================ ================== 27 28 96.4 32 GTTTGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : TGCAGGATATTGAGCATCTGATGCAGCAAAGTTGGTTACAAGGCTTGCGTGACTATGTTCGCTGCAGTGCGGTATTGCCAGTGCCTGAGGCGGTGCAATACCGCACGGTGAGGCGAGTACAGGCAAAAAGCGCTCATAACAAGCGGCAGCGCTCGATTGCCAAAGGGTGGTTAACTGAGCAGCAGGCGTTTGAACAAATACCGGATACCCAGCAGAGATCGCTCCGGTTGCCGTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGTGAATTGCAGGAACAAGCTCAGCCGGGGAATTTCTCTGCCTATGGTTTAAGTAGCAGTACCACCGTCCCCTGGTTTTAACCCTTTTTTTGCCACTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGCTAGAAAAAAGGGTTTTCCAGCCAGTGCTCTGATTTATGTTTAATAAACAGGGTACTGGCGTATTTTTATTACA # Right flank : CTAAACTCAGGGTTGAAATTACGTCTGTTATTTCTGGTCATTGTGTAATCTGTTTCGATAATGAGGTGATGAGATCACCTCTATTCAGGTGGCCAAATTCAGTATTCCACTTCACAAGGCCATCTACATGGCCCGGGGCAAAAAGTGATTTCTCTGGTGCTGGAGTTGGTAGCGAAAAATGGAATATACCGATTCAGAACTGGCGGTTACACAATATTACGGGCAGGCTCAACTCTGGTATCTAGAATTTTACTTGCCGACAATATCATACTGCTCCACATGACTAATAAAGGCTCGTAAGCGGGCAGGGATATAGTTCTTGTCTCTAAACATAAGATAAGTTGGTCTAAGCCCGCCATGCCAATCCGGCAATATGTGTACCAGTTCCCCATTGTCAATCAGTGATTTAACAAATTGAAAGGGTGCTAAACAAATCCCCAAGCTTTTCTTTGCCGCTCGGATAACCAACTCGGTATCATCCACCACCATATACGGGGTGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCGCTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1238-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEI01000052.1 Serratia sp. Ag1 contig52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1237 28 100.0 33 ............................ TGCCTCCGCGCCATCCTCCCCGCTACCGGCAGA 1176 28 100.0 33 ............................ TATCATAGTCGCACTCATCGCGGTCTAAGCGGT 1115 28 100.0 33 ............................ TGTGGTCGTCGTCAGTACCGCATATTCTGAAAC 1054 28 100.0 33 ............................ TTTGAATGTATACATAGCGTTAACTCCGATGGG 993 28 100.0 33 ............................ TGTTTCATATGGCTTGCGATTTGAACCGCGTGA 932 28 100.0 33 ............................ TATTTAGCACTTGGCGAAAGTAAAGCACGACAA 871 28 100.0 33 ............................ TCTTAGGGTGCCTGCGCGTGATGAGCAGGGATT 810 28 100.0 33 ............................ CCATTGCCTTATTAATGCCATCAATTGCACTAG 749 28 100.0 33 ............................ TTAAAGATGATTGAACGCGAAATGCAGACTTGG 688 28 100.0 33 ............................ CACCCACCGTCCCGGTTACGATTTGACGTTTTC 627 28 100.0 33 ............................ CGCCCTGTGGGTAAACGTTGTCGCGTCATGGGA 566 28 100.0 33 ............................ TGATTTCATCACGTTCGACTTGGCTCGATGTAG 505 28 100.0 33 ............................ TCTAATTCATCTTTGCTGTGATCATAAAAATCA 444 28 100.0 33 ............................ CCTGCTGACATTGTTCAGACCTGGTGAGAAATC 383 28 100.0 33 ............................ TACGCTGCGACGCATCGTAAAGGGCATGCAGCG 322 28 100.0 34 ............................ TTCAGCCAGGGCATCTGTGGCCGTTTCCTTTCTA 260 28 100.0 34 ............................ TTAGGACGCGAATTGTCGGGAGTATCGGCGGAAG 198 28 100.0 33 ............................ CTTTTCACCATTAAGTGGTTGGTGGACACCTTT 137 28 100.0 33 ............................ TATGGCTCGATAGACATATCGAACGCTGTCTGC 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACAACTTTGTATTGATCTTGCATTTTCCCTCACTCGAGAAATGGCTGGCCGATATGATAAACACAAAGTCTCTGAAACATTCAGGAAGCGAGTCATTGCCATGGATTTGCTCAATCAGATCACAGTTGATGTTAATGATTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACTTACCACCTGCTGTTCGTGGACGTATGAAACTCTGGTTTATCGAGCCTCGCCCGAACGTGTTTGTATCTGGTGTAAAAGATTCTGTTGCACAAACAGTTGTTGATTACTTGATGCAATATTCTCCGACAGAGTCTGGTCTTATGCTGTTTAGAAGTATTCCTCAACCGCCAGGCTACGAAATTCGTTACAAAGGTGAGATCAGAAAACCAATTACTAATATCAGCGGATTACAACTCATTATTGAAACCCTGAAATCCCCATAATCTATAAATATGGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : CCATTCATGGTGATTTTTGTCGAACTTGTGTAGTGGTTTAATGAATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //