Array 1 1277782-1270522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064939.1 Pedobacter endophyticus strain JBR3-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1277781 46 84.8 30 ...A.............A.......AC..T.........CA..... AGCGTGCTATCCAAGTAGTAAAGGCATCCC 1277705 46 89.1 30 .................A.......AC............CA..... CGAACTTAGGCATGACATGAGTAAATACGG 1277629 46 84.8 30 .................AGTA...C..............CA..... GATTACCCGATACTGTTAAACCACCTGCAT 1277553 46 89.1 30 .................A.......AC............CA..... GCGGTTTAAACGACACCGAAATACAAGCGT 1277477 46 89.1 30 .................A.......AC............CA..... GCAATAGGCTTCATAGTTTTTGCTGTTTCA 1277401 46 89.1 30 .................A.......AC............CA..... ATTCTTCACGAATAGCAAGATTATCTTTCT 1277325 46 89.1 31 .................A.......AC............CA..... TTTTTGCTAATAAGGCAGTTATCTTATCTTT 1277248 46 87.0 30 .................A.......AC..........C.CA..... TACTGGGATGCGGGAAAAAGTTCAGCTTTA 1277172 46 89.1 29 .................A.......AC............CA..... CCGGCATGTTAAATTCATAAGTGATGTCT 1277097 46 89.1 30 .................A.......AC............CA..... CGTGGCTGTTGAAAAGGCTTTGAGGAGGAT 1277021 46 100.0 30 .............................................. ATTTCGAAATAACATATCGTCCGAGTTGGA 1276945 46 100.0 30 .............................................. TGATTCTTTGCCATCCTGAATATACCAGGT 1276869 46 100.0 30 .............................................. TCGCTACCATCGGCGGTCAATTAGGTATTG 1276793 46 100.0 30 .............................................. TTATGCAGCTTCATCTTTTATGCAGCACTG 1276717 46 100.0 30 .............................................. AGTAAATTAATAATTTAAGCCGAATCTCTT 1276641 46 100.0 30 .............................................. ACCGTAGTCATAACTGGAGGTCGTAACAGC 1276565 46 100.0 30 .............................................. CTTGGGCATTAAAACCTATAGAGAAAAGAG 1276489 46 100.0 30 .............................................. GCAGTAGTTTTAGCATGTCCGGTAATCGTG 1276413 46 100.0 30 .............................................. ATTACGCTTATCCTTTAATAGCAAACACTA 1276337 46 100.0 29 .............................................. CAAATTCAATAAGCAAAACGAAGCTGAGT 1276262 46 100.0 30 .............................................. CACTCAGGAATGAGGAGCTGTCTCCACTGG 1276186 46 97.8 30 ........................................T..... CATGTAAACCGTTTTCATCTACCTCGATAC 1276110 46 100.0 30 .............................................. ATTTACGCTTGGTTTCTAAAACCTTTACTT 1276034 46 100.0 30 .............................................. CTTCTTCTCGATATATTCAGCTACGAGGTT 1275958 46 100.0 30 .............................................. ATATAAACCGCTACCAATAGATGCCGAAGT 1275882 46 100.0 31 .............................................. AGACCGGGATGGTAACATTTCCAGTTTGGGA 1275805 46 100.0 30 .............................................. GATGAGCTTAAATACGCTTTGCGCTCCTGG 1275729 46 100.0 30 .............................................. CTAACTTGCCATTCAAATTAATCGATTACC 1275653 46 100.0 29 .............................................. CATGTCTTTTTATTTTTGTTTTTGTTATA 1275578 46 100.0 30 .............................................. GAAGGCTAGTTGAATTTGTCAATAAACAAC 1275502 46 100.0 30 .............................................. CAAAAATTTCAACACCATCTTCTGAAATTA 1275426 46 100.0 30 .............................................. CAACAGAAGGCGAATAAAGCTACTCAGGAC 1275350 46 100.0 30 .............................................. ATAGTAATGTTAATCTTACCGGAATTAACT 1275274 46 100.0 30 .............................................. GTAGCTAATGTAACAACAGGTCGTTGGATT 1275198 46 100.0 30 .............................................. AAAACGACCAGTTGTTAACAAACGTCGAAT 1275122 46 100.0 30 .............................................. ATATTGATGCTTTGGTACCTGGGACCAGCC 1275046 46 100.0 30 .............................................. AGATTGAACCCCAAAAATACCCAGCGCGGC 1274970 46 100.0 30 .............................................. CCTATGACACTATTACTTTGGTAATGGACA 1274894 46 100.0 30 .............................................. TGACCAAATTAAAGCATGTTATCATGGAGG 1274818 46 100.0 30 .............................................. ATGATGCGAGTATGGAATGCCCAGAATGTG 1274742 46 100.0 30 .............................................. ATATTGAGATAGACGAAAAAACCGTTTATT 1274666 46 100.0 30 .............................................. AGCAGGTAGTCAAACATCAAGCATCGGCTA 1274590 46 100.0 30 .............................................. CTGTTGGAACATTTTTAGTTGGAGACTTTA 1274514 46 100.0 30 .............................................. ATATAGGGATAAAACAATTTTTATCAACAG 1274438 46 100.0 31 .............................................. CTCCGTACTTGGAAATGTGAATTTCCCTTTT 1274361 46 100.0 30 .............................................. AATTCTTCTAATTCAAAATTGGCATTTTCT 1274285 46 100.0 30 .............................................. GGAAAAGGATATGATAAGTTATTACGGTTC 1274209 46 100.0 30 .............................................. TACCACCACGAATGGCGCCACCAAATAATA 1274133 46 100.0 30 .............................................. TAAGCATTAGTATAAGATAAATAATCTTCA 1274057 46 100.0 30 .............................................. CATAATCGATCAAACCCTCGCACCACCTTT 1273981 46 100.0 29 .............................................. GCAGGATCAACAACCGTTGCGAGTGTTGA 1273906 46 100.0 29 .............................................. GATATAGTTGTAGCGTTTAACAGGGCATC 1273831 46 100.0 30 .............................................. AAACTATATGGGCTAGTTTCGTTGGTTATC 1273755 46 100.0 29 .............................................. ACTAAAAGTCGTTCGCCCGCTTCGCTTTC 1273680 46 100.0 30 .............................................. TAACATCGCTCAGCCCACTTTTACCCGCTT 1273604 46 100.0 30 .............................................. AGCGTTGGCAGCTTTAAGAAACTGATAGCG 1273528 46 100.0 30 .............................................. AACTTTTAATCAATACCAGCGCCGAGTTTC 1273452 46 100.0 30 .............................................. AACAAAAAATATTTTATCAAAACAAGCTTA 1273376 46 100.0 30 .............................................. ATGAATTTGATAAGGCTTTAAACCTGATGA 1273300 46 100.0 30 .............................................. GTCCGAATACCCCGATTTAACCTTGGCCCC 1273224 46 100.0 30 .............................................. CGCCAACGAGATTAAGCTGAACGACATCTA 1273148 46 100.0 30 .............................................. GGGGCTAGGGGGTTGCACTAAACAGCTTCT 1273072 46 100.0 30 .............................................. AGGTAAGCGAATGTGTTGTCCCAGCCGCCA 1272996 46 100.0 30 .............................................. GCGCTCATGCCTGCTAAAATGGCCTGGCGC 1272920 46 100.0 30 .............................................. TCGACACTCAAAATATTAATGAGGCTTTAC 1272844 46 100.0 29 .............................................. AAAAAAGGCTGGCGCAAAAGCCTATCCAA 1272769 46 100.0 30 .............................................. AATCCGTAAATAAAGTTCGCTTAACTGGTA 1272693 46 100.0 30 .............................................. ATGAAGTTGAACCTACCGGAATTTAAAGAA 1272617 46 100.0 30 .............................................. AAAGAGTACGACGTTCATTGCCTAAAAATT 1272541 46 100.0 30 .............................................. ATAGCTTTTAAACAACATTTATCCCTTAGT 1272465 46 100.0 31 .............................................. TTTCTTTCAGCCGTTTCAGCCTCGGCTAATA 1272388 46 100.0 30 .............................................. ATCAGGTACATACAGATACACCTTGCTTCT 1272312 46 100.0 30 .............................................. CCGCGTCATCAATCTTTCCAGTAGGAACTA 1272236 46 100.0 30 .............................................. GATATCAACGCCTAATCGCTGCTATTAAAT 1272160 46 100.0 30 .............................................. TTTGTTACCATAATTAATTTACTATCAACC 1272084 46 100.0 29 .............................................. TGCCTGGGCTAAAGAAGTTTCAGGAACGT 1272009 46 100.0 29 .............................................. GTTGAAGATCAAACCACAGGATTACACCA 1271934 46 100.0 30 .............................................. TAAACGTTGTAACAAAGGCTAATGTTAACC 1271858 46 100.0 29 .............................................. TTATTACCTTTTTCGATTTTTAAATCCTG 1271783 46 100.0 30 .............................................. CGCCGCTGGGTTTAACGCCCCTGGGCCTGG 1271707 46 100.0 29 .............................................. GTTGTCGTTAATTTTTGCGTTATCCCCGG 1271632 46 100.0 31 .............................................. TAACCAGGGGCGGGACCTTTCCGCCCCTTAA 1271555 46 100.0 30 .............................................. TTTTAAACCGTGCCTTTTGGGTTGAACAAT 1271479 46 100.0 30 .............................................. ATAAAGCATTAGAAGCGAAAAACACGCCCC 1271403 46 100.0 30 .............................................. ATATGTCAGGTTTAAGAAAGGCGACACGCC 1271327 46 100.0 30 .............................................. TGAAATCGGTGTAAAGGTGGGCGATACCCA 1271251 46 100.0 30 .............................................. AACGCTGCTCTGCCAGCTGGAGCGCTCGCA 1271175 46 100.0 30 .............................................. TTGTAACAGTGCCAATTTGAGTTGTAGAAG 1271099 46 100.0 30 .............................................. AGAATGGATTGGATTCTGTTCATAAAGATT 1271023 46 100.0 30 .............................................. AAAACATTTAAAAACTATGGCAATAGCTAA 1270947 46 100.0 30 .............................................. TACAGTCTTTTTTGAGCGCCACCATGTTGA 1270871 46 100.0 30 .............................................. CTTGTAAGATTTTTGGGCGTAACTTGCTAC 1270795 46 100.0 30 .............................................. AAGGAGGCGATGCCGGCGGGGGTGAGTATG 1270719 46 100.0 30 .............................................. TATCTGAAAAAGATTCAGAGATTGAAAGCT 1270643 46 100.0 30 .............................................. CCGGCAAAGAATACGCAGCGGCGGTGGAGA 1270567 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 96 46 98.7 30 GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTTAACACAAC # Left flank : AAAGAGTTACATCTTCTTAACTAAAAATCCACGCGAAATTTTTAAAAAGCTGAAAAAGAACTGCGAAATTATTAAAGCGGCGGGCGGTTTGGTAGAGAGCGCCAATGGAAATTATCTTTTTATTTTTCGAAACAAAAAGTGGGATTTACCAAAGGGAAAGCTTGAAGAAGGTGAAAAAATGAAAGAAACAGCCGTTCGGGAGGTTGAAGAAGAATGCGGCATTAAAGTGGCAAAACGCGAAGAAAAACTTTGTAAAACCTACCACGTTTACCCAATGGGCACAAAAATGGTAATCAAAAAAACAAATTGGTACAGAATGAAGGTTAAGGGCGAACCGAATTTGATACCTCAAAAGGAAGAAGGCATCGATCAGGCGGTTTGGCTAGATAAAGACCATGTTGGTCCGGTCGTAAAAAATACGTTTCCATCAATTATGGATGTGTTGAGGGCTGGCGGGGTTTTGTAATGAAGTGGTTAACTTTCTGGCTTTCATCTTTTTT # Right flank : ATACCATAAGTCAATTAGTTAAATATCAGTTCATTAATCAAAGATTTAGAATTAAAAAAATCCTGATGAATCAACATCAGGATTTTTTTTCTAATTATTTATTGAATTGTAATAAGCCTTTATTTAAAATAATTCAAGCTGTTGAGGCGTATCAGGCAATTCTTTTTCCTTCTTTCCATAAAATAATTCCATCATCCCGAATTGCTTGTCAGTAACAGTCATGATCCCCACATGACCTTTTTCGGGTAATAGTTTTTTTACTCTTTTTATGTGCACGTCAGCATTTTCTCTGCTGCTGCAATGCCTTAAATAAATTGAAAATTGGAACATCGCAAACCCATCCCTTAAAACCTCTTTACGAAATTTAGCAGCAACACTTCGTTCCTTTTTGGTTTCGGTAGGTAAATCGAAGAAAACTAGTATCCACAAAATTCGATATTCATTTAAGCGCATCAACTAAAAGGGTAATTCATCCTCAGGTTTTGTAAATCCAGATTCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTTAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATTCTTTGATTTACTGATATTAGGCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //