Array 1 13625-11704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPX010000084.1 Calothrix membranacea FACHB-236 contig84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13624 37 100.0 35 ..................................... CTGTTATTGAACTTTGGGGGCGTTCTCGTCAGATT 13552 37 100.0 36 ..................................... AGTGCAGAAAAGAAAGGTTCTTTGATGCTTGTGACT 13479 37 100.0 38 ..................................... AAACTGAGTACACCAGCATTAATTGCACCAGAAACAGC 13404 37 100.0 35 ..................................... ATGGGATTTGAAACAGGCGGAACTTATAGCGCCAG 13332 37 100.0 34 ..................................... AAGGAACACCACCAAATGACCACAGTAGTAAATG 13261 37 100.0 35 ..................................... AACTTAAGGGGTGTATTAGGGCTGAGTTCTCTGAA 13189 37 100.0 35 ..................................... AGGAAATGGGAATCCCAACGGATCATCTATTACTG 13117 37 100.0 35 ..................................... TGCTGCGATCGCGCCTGGTGATTTTTGAATTTTTA 13045 37 100.0 34 ..................................... GATGTGGGGGCAATCCTCAATTTTATTGCTCAGG 12974 37 100.0 35 ..................................... ATCAAAGCACGATATGAGAACCCAAGCGCTAGATT 12902 37 100.0 38 ..................................... TAAAATTCGATTCAGCATTCCCTAAAGCTTGCTGTGGG 12827 37 100.0 37 ..................................... CCCATACTTTCCAAAAACTCGCCCAACCCATTGCAGC 12753 37 100.0 35 ..................................... TTATGAGCTAGTTGAGATTGAAAGATTTGGCGCTA 12681 37 97.3 35 ............A........................ GGCACAACTGAAGCGATGGTTAAAACGCTCACGAA 12609 37 100.0 35 ..................................... TGAAGTTGAGGGCGATCGCGGGCGTGAACTGATAG 12537 37 100.0 35 ..................................... TCCATCATTCCTATCAGTGCCTCCACATAGCTAGT 12465 37 100.0 38 ..................................... GACACATACGACCCTGAGAAATTCCGTGCGCCTGCTAG 12390 37 100.0 35 ..................................... AATTCTCTATTCTGTCCCTGGACAATCTGCCTTTT 12318 37 100.0 35 ..................................... TACTGCGGCGAGTTGGAGCAAGCAGTACCAATAAT 12246 37 100.0 38 ..................................... CAGGGTATCTGCTTTGTATCTTTCAAATATCTGCGGGA 12171 37 100.0 37 ..................................... GCAAAAGTGTGGCGAGTGCTGTAAGGCTTGATGTATG 12097 37 100.0 35 ..................................... AACCAGTGGCGACTAGAACAAGACGGCTGGATACT 12025 37 97.3 32 ..A.................................. GTAGGAATGCTATTTAGTGCAGGTTCCTTAAT 11956 37 100.0 35 ..................................... TAGATGCGATCGCAGCAGCGCTGACACCTGAAGAA 11884 37 100.0 35 ..................................... AGGGTGCGATCCATTCGTAACACCCCAGCCGAGAA 11812 37 100.0 35 ..................................... AAAAGATGGCGCGGTGTAAGTACAGAATTAGAGCA 11740 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 99.7 36 GTGACTCTGCCCGTCAAAGGTGCAGCCCCATTGAAGC # Left flank : AGAAGCTGAGTGGCTATGTTTAAAAGCCCCAAACAATACCGCACTAGTCAAAGTCAAATGCTGTGATAGTGGTGTTTCTCAATATCAATGGCAAGCCTTTAAGCGTCGTCGTCATCACGGTGATGGGCGCAAGGCATTAGATAATGGATATTGGTTAGAGATAGAATTTGCACAGGTTCAGCAAGGGCCGATCGCTCTTGGATATGCAGCACACTTTGGACTAGGTGTATTTGTACCAATAGAAGAGTGAATTGCGCGGATGGGTAGCTGTAATTTTGCACTGTTGAGTTTAACACAGAAAATCCATACTATATAAGGATTTCAGACAAATAGCCCCAAAAAGCATCCGCGCAGTTCCTAAAACCATTATTAATAAAAGGTTTGAGCATTTTAAGATTTAGTAGATACTGTATATGTGCGGGCGAAAATTTACTAAATATTGCTCATCCGCGCCACTGTACCTTGAAAACTATATATAGTAAGCTTTTAGCAAGTCCGCT # Right flank : ATTCCCCAGTAACCAACAGGTGAGCGATCGCAGAACTTTTTAGTCTACTGTTTTTAGTTCGTTCTTCATCAAACCTTGTTTGTCCAGAATTTTTCTGGATATCCAGAAAAGCGATCGCTTTGGGAGATCCTATGAATGTTTGATTTTTAGCATAAGTATTAGCCGTTATTTAGGTAAATAGTTAACATTTGTACAGCCTCATCCAATCATCTCTATATATTTCTTGCTTCCTTGATTTACCAAAAGCCCAATATGTAATCACAGCTTTTACAAAGTACCTAAAACACCGATTCAGTAATCGGAATCATGAAGAAGAAACCCGGTTTCGTTAATTTGCAACAAGGAATACTTGGTTGTAAAAGACCTTAACCCTGTTCTGTCACTTCCGGAAAACAATAATCGTAGCGAAACACTGGAACTTTTATCTAATCAAGCTTTGAGCTTTTATTTTCTAATAGAAACTAAAATTTGTAGCCAAAAACTGAAAAGTAAAGCTCCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACTCTGCCCGTCAAAGGTGCAGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.70,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 13099-10602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPX010000093.1 Calothrix membranacea FACHB-236 contig93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 13098 37 100.0 33 ..................................... TTCTAAATGAAACAGCTAACTCTGAAATTGAAA 13028 37 100.0 35 ..................................... CAATAGAAGCAAGGGGAATGCGGATTATAGACTGG 12956 37 100.0 33 ..................................... GGCATTTGGCAATTCATCACTGATGCTTATTAT 12886 37 100.0 36 ..................................... GTCTTTGATTTGATATTGAATCCAGGGATATGCATC 12813 37 100.0 36 ..................................... ACTTTCAAGTAAGCACGCGGAAACTGAGGACTTGCT 12740 37 100.0 36 ..................................... CAACTAGGAGGGCAAGAAGAGCCGCAAGAAACTATT 12667 37 100.0 35 ..................................... TTGCTGATTTAGAAAAAGCTTTGTGCATCCTAGAA 12595 37 100.0 35 ..................................... CAGAAGTCATTAGCCCCGCTCCTACGGCATTTGAC 12523 37 100.0 42 ..................................... CTATTGTCTCATGACACAAATGTAAGCGACAGATTCAGAGCA 12444 37 100.0 34 ..................................... AACTTTTCTGCTTTCTATGACCAAGCTAATTTCT 12373 37 100.0 40 ..................................... CGCTTCAACGCAGCCAGCATTTTATTTGCAGTTGCCGGAG 12296 37 100.0 38 ..................................... GTTACCTCTATCACCAAGCACGACATTGAGGAAGAGGA 12221 37 100.0 35 ..................................... TTGCTACCTTAGTGCTACTAAAAAAATGTCTTCTA 12149 37 100.0 39 ..................................... ATCTGGCATAATTTGATCACTTTCTTATTACTCAAGGAA 12073 37 100.0 34 ..................................... GGTTACATCAAGGACTAATTGCACGTGGGAAGAC 12002 37 100.0 35 ..................................... AGGTTAACCACGCCTCCAACATTTGCTGATGTGTG 11930 37 100.0 36 ..................................... TTTTCTCGCGGTAACTTCGTATTTATCCGCAATGGG 11857 37 100.0 32 ..................................... GTTCGTCACTCCAAGCTTGGCGAACGCTTGAG 11788 37 100.0 34 ..................................... TCTTCGTAGTAGGTTCCCGCCAAATCCTCCATCA 11717 37 100.0 35 ..................................... GTAGCTCAAATTCACGCCCATTAAGATTGAATTTT 11645 37 100.0 35 ..................................... AAAAAAACAACCGGAGCAGAAGCAAGTAACAACAT 11573 37 100.0 35 ..................................... CATCATCATCCAATCGCCTAGCATCAACGGGAAGA 11501 37 100.0 34 ..................................... GTTTATTGTGGGAATGCAGGGTGATGAATAAAAA 11430 37 100.0 34 ..................................... AAGTAATTTCTCTTTTTGGGCTTGAATCGAAGAT 11359 37 100.0 40 ..................................... TGAAGATTATGTGCTGACCCAAACCATTGACACTGGTGGC 11282 37 100.0 34 ..................................... TTGTGGGCTATTTGCTAAATCCTTGAAAGCTCTA 11211 37 100.0 34 ..................................... TGCAGACATCCCCCTAGGGGGAACAAAACCTACG 11140 37 100.0 35 ..................................... AAGATAAATCCCTTCTTCTATGAGGAAGCTGGGGA 11068 37 100.0 35 ..................................... TATTCCTGAGTATGACGAAAGCTTTCCATGAAATT 10996 37 100.0 36 ..................................... CATCTACGGCTTTACCTACACCACCGTTGACAAAAA 10923 37 100.0 33 ..................................... TCAACCCCGCAATTGGCCCCTTTGAAGCATTCC 10853 37 100.0 35 ..................................... TCCAGGTATGTTATCGCTAGTGTCTCCGTATAACG 10781 37 100.0 34 ..................................... GGCTTACCTAGAATTTCTGCCTCTGAAAGGCTAG 10710 37 100.0 35 ..................................... TATTTATGGTACTAACACAGATACCATTCCAGAAA 10638 37 94.6 0 ...................T........A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 35 37 99.8 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TCTAGCCCGTAATTGCCAGCTTCCAGAGCGCTTTGGACTTCATCAGAAAAAAAGTTAACGCCGATGCTAACTAACGCTCGCTCGTATTTTTTGAAGATTTCGTATTCTATCGAGTCCTTTTCCCACAACCACACTCAACTATCTCCAAACAATTCATTGCAAGTGTTCTTCACTCCATCATACTTTCAAGTTTATCTATGAACCATGATTGCTCTGGTAAAGTTGAGCGTACCAAAGGTATATTGTTGGATAACAATAATATTTTCCTTACTGAATGCGCGAATAGATAGATGTTTAAAAGTTGATTTCGGCAAATGAGGCTAAAATATTGGCACATAAGACTTTTGGGGCAACACTTCATCAAAGTACCCGCGCACTTTATCTAGACTGGGTTTTCAGCGTTTACATACTGATTAACCATAATGTTTTATGCTATTATTAGCTCATTCGCGCAACAGAACCTTGAAAAGTGAATACAGCTTCTATTTCAGGCTTCCGCC # Right flank : TGTACAAATCAATGCTTTAGATATGCTCAATAATGGATAGGGCTGTTTACTGTGATATTCTTGATAGTAATCTCAAGGCTGCCCTCAATGCGGCTGCTTCCACATACCCACTTTGGATGTAATTGCTATTTTCTGAGCCTGTTCAAAAGCCAGATGATTCGGGCATTCCACCTCTGACTGGTGCATTTTAGCCAAGCCATTCTTGAGTAATTCTTCTTGAAAACTGTCCTCCAGAGCACCCTTACCATAAGCCATTACTTCTGCAACAGTACGTCCCTTACTATTTTTTTGTACTGGAATAATCATTACTTCGTTATCAGCATCAGCAACTAAAGATTGCAATTTATGTTTTGCTTCATTCCCTACTGCTTGTCCTGAAGCTTTGTCCTGTTTGACTTCAAGAACATCAATGCCACAAAGCTGAACTTGCATTTGGCTACCATCGGTTTGGCGAACTGTTAGGGTATCGCCATCTGCAACATCGGTAACTATCCATTGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 133216-134794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPX010000012.1 Calothrix membranacea FACHB-236 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 133216 37 100.0 36 ..................................... TCAAAAATTCCTGGACGGAAAATGACGAATATGGTT 133289 37 100.0 35 ..................................... TACTAATGGTTGGTTACTATTATTTGTAGATGGCG 133361 37 100.0 34 ..................................... CCAAGACTGGTGTTTGCATTAGTGCAGTTTTTTT 133432 37 100.0 36 ..................................... CGGCGAGAACAGGTAACACTATTCCATCTAATGCGA 133505 37 100.0 36 ..................................... CTTGGTCAATAGCTGGGGCAATCTTAGCGAAGGCTG 133578 37 100.0 36 ..................................... TGGAAAGATAGCAGAGATTAAAGGCATTCTTAAAAA 133651 37 100.0 36 ..................................... CAGGCGCACTCAAGGGGGCGGGGTCAACCCCCACGA 133724 37 100.0 38 ..................................... GAAGCCTTCTACAACCTTGCTACCAAGGGGGCTGTTAT 133799 37 100.0 36 ..................................... CACTACCGCCCAATAAATCTTGTCCCAAACAGAAAT 133872 37 100.0 33 ..................................... GCTTCCGCTTGGGCTGGCTCCTCAGCTTGAGCT 133942 37 100.0 39 ..................................... TGTTCCTGAATTAAAAGCCTAATCTCATCAGAGATAGAC 134018 37 100.0 37 ..................................... GCCCAACACCGACGATAATATTTAACTAGAGAAGAGA 134092 37 100.0 45 ..................................... ATTGGACAAACGTTGCTTCCTTAATCGATTTCACTTAGGAAGTTT 134174 37 100.0 36 ..................................... TATTTGGTTGTGGGGATTATGAAAGGCCATTAACTT 134247 37 100.0 36 ..................................... ATACTTGGGAACTCCTCACTTTGGCTTTGCCGAGAA 134320 37 100.0 34 ..................................... TCAATTCCCCTCTTCTTAGCAACCCGTTCACAAG 134391 37 100.0 36 ..................................... GTATTAGCGGGAACAAGAACGCAGACATCGCCAGTA 134464 37 100.0 37 ..................................... GAGATAAATCAATATTTGATTTATCTACTTGATGACC 134538 37 100.0 36 ..................................... TCGCTGATATATGACCACTAGACAGACGATTAATGT 134611 37 100.0 38 ..................................... TATTTGAGGTTGTGTCCACGCGGGGCTTATGCAGTGCG 134686 37 100.0 35 ..................................... AGTAAATAAATCTGTCATGACATCTTTGGAGACTT 134758 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 22 37 100.0 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : CAAAGGGTTAAAGTTTCCTGTTTATGTATCTTGGTATTATTTTAAACGTGATGATGGCAAGTATGAAAAACGATTTGTCGTTTCCACCAAAGCTCTTAAAGCCAGTACTATTTCTTGGTGGGGTAAACGCCGTTGGCAAATAGAGGGCTGGTTTAAGACTGCCAAGCATCGTTTCGGCTTACACCGCTTTGGGCAAGGAACACTTTTAGGCGTTTACCGTTGGTTGATACTGTCTTTGATTTCCTACATATTGGCCCCGAAGGGCTTACTTATCTACAACGAAAACATCCACAAGTTTACCAAATTGGGGACAAGCCGCAGAAATTGCATTTCAAACTATCTTTCCACAATTATTGGTGTTATTTCTTTTACAAGATATTGAACGCCTGAGAAACTTGGCACTTAGTCATGGAATTGACATCCAAGTTTACAGGTGCAAGATATAAGGTGAGGGTTATTGAAACTTCATGCCTTGTTAGAACAGATGTTTCTTTCCAAAG # Right flank : CCCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCCCCCGCTTTGACTTGCCAACAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGATGTATTGATGTCCTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGCAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGGCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACACTTAGATGAACGCACAGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 7180-7745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPX010000100.1 Calothrix membranacea FACHB-236 contig100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 7180 28 100.0 47 ............................ CGGTGTCATCTCAAGCGGTATCCAGAATACTTTGTGGTCTGTTACAC 7255 28 92.9 49 C.....C..................... CCTGAATACCCAATTCTTAGATAGCTGTCTAGCTTCATCTAGGTTACGC 7332 28 89.3 40 .C......TA.................. CAGTCTTTCCATATCTGCCATTGAATAACCATTCATAGGG 7400 28 92.9 51 ..........T........A........ TTTACTCTGCACATCGCGGCGTTCGTCTCCAGTGAGGCGACCAAGTTACGC CACCT [7409] 7484 27 89.3 52 ........-........AC......... CGCATATACTCTCCATAAATCCCCATCCTCTCCCTTACGGTTACGCTTACAC 7563 28 92.9 47 .................AC......... CTCGTCAAGTACTTGACCTACCTCGTACTTGCCTTTTGGAGTTACGC 7638 28 100.0 52 ............................ CATAGGAACAATATTGCGATGTTGTCCAGCAGGTGTGGAGCCGTCGTTAAGT 7718 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================================== ================== 8 28 94.7 48 TTACACTTACCCCGCAAGGGGATGGAAA # Left flank : TCAAAATAAAAAAGTTCGGAGTAGTTTTTTTAGCAAAAAAGTGTTTTTTGAAAGGTAACTAATTTAGCAGCTTAAAAAAACGTAAATGTAACAAACATATTTTTGGTTATTTAGCTGACATTTTCCTAATATTAATTTGTGATTTTAACTACTAACTATTATTTATTCAGTTATTTATTTAAATTAATTCGCTGCAGTTAATAAAAAATATATGCTCAATATCACTATAGTAAAATCTATCCAATTACTGATTCTTTTGGTGTGAATACCGTGAATACAAGGCTGATCCAAAAATGCTGCTAATTTCTTCAGCAATCTGTAGAGGCATAATATATCCTGCAATAGGATTATTTAGCAATAAATCCTGAAAATAAGGAGTGATACAAAATTGCGATCGCAGTGATAATTCGCTTACGAGAGTCATTCATGATGGCATTGAATCAACACAAATAATGGAAACACATAGGAATACAAACTGCTGACGCTAAACCAAGAATCAG # Right flank : ATTAGGAGGTAACAAAGTGGGTAATGATCGCTGGTATGAGGAAAATGTACCAAAAGCAGATCAGCTCTATGATGAATTATTAAAAGAGCTTCAAGATGAAGGATTAATATGAAGAAAACAAAGCCTTTTAGCGAATTGCGAAAAAGAATGACACCAGAGCAAAGAGCAGAGAGCGACACTCGTGCGAAACTTGCGCTACTTCATATTACATTGATGGAACTACAAGAATCATTGGGGCTTTCACAGGATGATTTAGAAAAAGACCTCAACGCTATTGGTTCTAGTATGTCTGAGTTGGAGAATCAAGAAGATATTCAAGTTACAACTCTCTCTCGTTATATAAAGGCTCTTGGCGGTACTCTAAAACTAGTAGCGCAATTCCCTGATGAGGAGAAGGAAATTATTTTGGCTCAATTTGAGTAAACTTGGGGTGTTGGGTTACCCTGCGGGAAACTGCTCCGCGTCTACGTTCCTCAACCCAACCTATATCTTACCCCGCA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACACTTACCCCGCAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 22529-22932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPX010000027.1 Calothrix membranacea FACHB-236 contig27, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 22529 36 100.0 38 .................................... AGGATAAATACAATAATTGGGTGCAGCGGGTAAAAGAT 22603 36 100.0 38 .................................... ATTCTGGCATTCTCCTTAAGTACAGGCATGGTTCTTTC 22677 36 100.0 35 .................................... AGAGCCTGGGGTGCTATCTGAGCCTAATGGCAGTT 22748 36 100.0 36 .................................... CGGATTGCAATAGCTAACAAAGGGGAAGAATTAGAA 22820 36 100.0 38 .................................... TAGCTCCATGTTCCTTGTAAAGTCCTAAGCGAGAATCT 22894 36 86.1 0 ..T......T.........TA..............A | TAT [22903] ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 37 GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGCAG # Left flank : AGGTGAAAGTCGAGATTTAGTAAATGATATTACCCTCTTACCAAAAAATTACTATGCAGAATCAATGAGGTGGTTAATCCGGGATGAATACGGGTTGCTAACTTTACCTTATTGGGTAGACCATGTAGGTTCGCGGGGAACACGATGGTTAAGTTACGAGATTCAAGAATGTCAAGTATTGCAACCACCTGAATTATCTTGGACTTTAGTTCAAAGTGATTAGGGGTTATTATTTTATTTTGCAAGTACCTTTTCTTGAGAAATCTAAATACCATGAGCAATAGTCTTGTCTTCTTATTTGACAAGCCTTTTATAGATTTTATATGAATCAAAGATGCTTGCGATTTCCTGGAACACTCTCAACACAAAAGTTGAGGGCTTTACAAACTTTCTTTGTGCTATGAATAGCTATTAATTTTTGCAACTGAACTAATCTTCAGTGATAGATGCTTGTAAAATTGAACTAGAGCTTAGGCAAGTCAACAAGTTTGGCGATTGCC # Right flank : ACAAGATAGGCTCAAGTATTTGCGTTCCATATACTGATATCTTTCACCAGTACAGATCAATTGCTTCCCTTAAAAGGCAATTGGTGAGTATAAATACGTTCTCACTGAGTACAAAACTAGTCCTCTTGAGTCTCGTCTTTCCGAGAAATTTTAGCGATAATTTTTTTCCATTCCTCAATTTGCTTCTGTATTTGTAATTTGCGATCGCTCACATCTTGACTATCATCAACAGACACATCCTGACTGCTCAATCGCTCACGGTACAGAGCAATCATTTCGGTTAGAGCTTTTTTATTGCTTGCTGATCCTCCAAGGTCAAAGAACTAACATTGACTGGAATCAGCTTTCTGCCAATTCTCTCCACAAACTCAGACCGACTTAAATCCATACTGTCGGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //